Wall clock time and date at job start Mon Mar 30 2020 01:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47105 * 2 1 4 4 C 1.42908 * 113.99736 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46746 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46785 * 175.35000 * 5 4 3 7 7 C 1.52997 * 110.01293 * 304.15590 * 6 5 4 8 8 N 1.46496 * 109.47352 * 304.95586 * 7 6 5 9 9 C 1.34776 * 120.00310 * 174.90239 * 8 7 6 10 10 O 1.21695 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.46369 * 120.00235 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00000 * 359.97438 * 11 9 8 13 13 C 1.40052 * 120.00196 * 179.72570 * 11 9 8 14 14 N 1.30672 * 119.99994 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00308 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47292 * 89.99788 * 15 13 11 17 17 H 1.48499 * 109.47344 * 209.99630 * 15 13 11 18 18 H 1.48506 * 109.47015 * 329.99831 * 15 13 11 19 19 C 1.54262 * 110.03283 * 65.54682 * 6 5 4 20 20 C 1.54962 * 104.16139 * 95.75627 * 19 6 5 21 21 C 1.54886 * 102.77888 * 37.88594 * 20 19 6 22 22 C 1.53875 * 110.02901 * 182.76470 * 6 5 4 23 23 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47186 * 299.99601 * 1 2 3 25 25 H 1.09004 * 109.47269 * 59.99902 * 1 2 3 26 26 H 1.09005 * 109.46952 * 239.99991 * 2 1 3 27 27 H 1.08997 * 109.47068 * 120.00727 * 2 1 3 28 28 H 1.09001 * 109.47076 * 60.00054 * 4 3 2 29 29 H 1.08999 * 109.47137 * 300.00510 * 4 3 2 30 30 H 1.08995 * 109.47361 * 55.34887 * 5 4 3 31 31 H 1.09004 * 109.47287 * 295.34298 * 5 4 3 32 32 H 1.09008 * 109.46782 * 184.96228 * 7 6 5 33 33 H 1.09000 * 109.47270 * 64.96139 * 7 6 5 34 34 H 0.97006 * 119.99836 * 354.89989 * 8 7 6 35 35 H 0.96992 * 120.00407 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.48599 * 214.39905 * 19 6 5 37 37 H 1.08999 * 110.48732 * 337.04661 * 19 6 5 38 38 H 1.09003 * 110.71709 * 279.57206 * 20 19 6 39 39 H 1.08995 * 110.92909 * 156.29813 * 20 19 6 40 40 H 1.09000 * 110.49166 * 203.40934 * 21 20 19 41 41 H 1.08999 * 110.48637 * 80.76017 * 21 20 19 42 42 H 1.08996 * 110.03265 * 359.95160 * 22 6 5 43 43 H 1.08998 * 110.02967 * 121.38159 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3461 3.0602 0.1187 7 6 5.8357 2.3221 1.3663 8 7 5.1242 2.8269 2.5431 9 6 5.3176 2.2508 3.7461 10 8 6.0836 1.3114 3.8548 11 6 4.6063 2.7549 4.9219 12 1 3.9268 3.5888 4.8255 13 6 4.8029 2.1525 6.1708 14 7 5.6210 1.1401 6.2864 15 14 3.8947 2.7953 7.6712 16 1 2.5993 2.0824 7.8088 17 1 4.7182 2.5641 8.8851 18 1 3.6444 4.2505 7.5126 19 6 6.0218 2.4773 -1.1395 20 6 6.2660 3.7110 -2.0448 21 6 6.6613 4.8098 -1.0272 22 6 5.7519 4.5428 0.1901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8341 0.9763 -0.8892 29 1 3.8333 0.9765 0.8908 30 1 3.3543 3.4397 0.8465 31 1 3.4944 3.4031 -0.9276 32 1 6.9059 2.4879 1.4899 33 1 5.6437 1.2548 1.2557 34 1 4.5139 3.5760 2.4566 35 1 5.7569 0.7226 7.1513 36 1 6.9677 2.0022 -0.8791 37 1 5.3598 1.7659 -1.6332 38 1 5.3547 3.9861 -2.5758 39 1 7.0787 3.5242 -2.7467 40 1 6.4659 5.7997 -1.4394 41 1 7.7104 4.7119 -0.7484 42 1 4.8657 5.1753 0.1401 43 1 6.2978 4.7364 1.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358555210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:52 Heat of formation + Delta-G solvation = -115.829160 kcal Electronic energy + Delta-G solvation = -21568.976790 eV Core-core repulsion = 18419.938903 eV Total energy + Delta-G solvation = -3149.037887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57729 -37.56298 -36.80977 -33.53731 -32.44779 -31.81179 -30.42097 -28.63602 -27.69294 -26.18678 -24.06416 -22.66927 -22.58538 -20.50190 -19.49287 -18.27772 -17.20669 -16.64779 -16.08959 -15.46542 -15.21600 -14.75105 -14.38156 -14.16872 -14.09709 -13.81255 -13.18696 -13.09922 -12.59941 -12.35585 -12.10419 -12.00298 -11.91316 -11.36687 -11.24400 -11.13121 -10.99739 -10.96309 -10.93160 -10.79204 -10.47472 -10.41940 -10.36678 -10.24597 -10.11872 -10.00740 -9.30044 -8.81048 -7.56052 -7.41035 -6.14236 -4.58853 3.16616 3.23348 3.26830 3.81219 4.14343 4.59866 4.64187 4.71078 4.81706 5.10496 5.14424 5.22144 5.29706 5.36048 5.38687 5.47598 5.55692 5.59157 5.66675 5.70871 5.77478 5.81100 5.83536 5.89082 5.95974 5.98357 6.02894 6.11645 6.14894 6.20427 6.30736 6.40419 6.42975 6.51412 6.66607 6.69327 7.41806 7.47686 7.99693 8.17425 8.38930 9.07307 9.60642 10.65105 10.84547 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.006007 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.646455 B = 4659.743388 C = 6180.648629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.059 3.941 5 C -0.097 4.097 6 C -0.068 4.068 7 C 0.143 3.857 8 N -0.764 5.764 9 C 0.555 3.445 10 O -0.584 6.584 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.770 5.770 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.116 4.116 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.380 0.620 35 H 0.267 0.733 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 3.172 -15.081 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.017 4.017 5 C -0.135 4.135 6 C -0.069 4.069 7 C 0.018 3.982 8 N -0.420 5.420 9 C 0.359 3.641 10 O -0.467 6.467 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.399 5.399 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.154 4.154 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.212 0.788 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.798 2.485 -14.871 15.549 hybrid contribution -0.559 0.365 0.731 0.990 sum -4.357 2.850 -14.140 15.068 Atomic orbital electron populations 1.21728 0.94067 1.01933 1.02942 1.22405 0.95306 0.84265 0.99993 1.87826 1.21748 1.26041 1.95463 1.22690 0.80581 0.97945 1.00518 1.21489 0.94424 0.95064 1.02525 1.21409 0.94280 0.95807 0.95398 1.21002 0.95764 0.97009 0.84401 1.46131 1.49729 1.38384 1.07744 1.18186 0.82149 0.82362 0.81402 1.90594 1.40470 1.30606 1.85001 1.20890 1.27535 1.17896 0.91878 0.91557 1.25693 0.93954 0.93750 0.99727 1.70023 1.28199 1.17207 1.24436 0.86412 0.79753 0.79972 0.80845 1.19789 1.20510 1.18925 1.22507 1.00661 0.97429 0.94890 1.22476 1.00766 0.95465 0.97291 1.22344 0.99715 0.98272 0.95734 1.22264 0.99505 0.94785 0.98797 0.91390 0.91725 0.92202 0.93941 0.93192 0.93920 0.91941 0.90646 0.91728 0.93687 0.93197 0.78833 0.92226 0.91175 0.91503 0.91757 0.91949 0.92064 0.91752 0.91727 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.06 0.76 6.66 37.16 0.25 1.01 16 3 O -0.39 -6.24 10.34 -35.23 -0.36 -6.61 16 4 C 0.06 0.90 5.38 37.16 0.20 1.10 16 5 C -0.10 -1.39 4.09 -26.73 -0.11 -1.50 16 6 C -0.07 -0.97 0.41 -153.39 -0.06 -1.03 16 7 C 0.14 2.73 3.60 -4.05 -0.01 2.72 16 8 N -0.76 -17.02 4.96 -61.72 -0.31 -17.32 16 9 C 0.56 15.91 7.75 -12.99 -0.10 15.80 16 10 O -0.58 -19.07 15.02 5.19 0.08 -19.00 16 11 C -0.54 -15.60 9.54 -35.63 -0.34 -15.94 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 14 N -0.77 -23.39 11.83 55.55 0.66 -22.74 16 15 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.12 -1.42 5.74 -25.03 -0.14 -1.56 16 20 C -0.12 -1.27 6.91 -24.70 -0.17 -1.44 16 21 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 22 C -0.12 -1.52 5.71 -25.61 -0.15 -1.66 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.58 6.54 -51.93 -0.34 0.24 16 29 H 0.06 1.14 6.25 -51.93 -0.32 0.81 16 30 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 33 H 0.05 1.03 6.59 -51.93 -0.34 0.69 16 34 H 0.38 7.63 6.96 -40.82 -0.28 7.35 16 35 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 36 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 37 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 43 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -33.97 339.61 -7.73 -41.70 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.36 Total: 6.32 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.53 Total: -2.92 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.35 Total: -40.06 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.29 Total: -25.61 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.97 -7.73 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358555210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.127 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds