Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47105 * 2 1 4 4 C 1.42908 * 113.99736 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46746 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46785 * 175.35000 * 5 4 3 7 7 C 1.52997 * 110.01293 * 304.15590 * 6 5 4 8 8 N 1.46496 * 109.47352 * 304.95586 * 7 6 5 9 9 C 1.34776 * 120.00310 * 174.90239 * 8 7 6 10 10 O 1.21695 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.46369 * 120.00235 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00000 * 359.97438 * 11 9 8 13 13 C 1.40052 * 120.00196 * 179.72570 * 11 9 8 14 14 N 1.30672 * 119.99994 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00308 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47292 * 89.99788 * 15 13 11 17 17 H 1.48499 * 109.47344 * 209.99630 * 15 13 11 18 18 H 1.48506 * 109.47015 * 329.99831 * 15 13 11 19 19 C 1.54262 * 110.03283 * 65.54682 * 6 5 4 20 20 C 1.54962 * 104.16139 * 95.75627 * 19 6 5 21 21 C 1.54886 * 102.77888 * 37.88594 * 20 19 6 22 22 C 1.53875 * 110.02901 * 182.76470 * 6 5 4 23 23 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47186 * 299.99601 * 1 2 3 25 25 H 1.09004 * 109.47269 * 59.99902 * 1 2 3 26 26 H 1.09005 * 109.46952 * 239.99991 * 2 1 3 27 27 H 1.08997 * 109.47068 * 120.00727 * 2 1 3 28 28 H 1.09001 * 109.47076 * 60.00054 * 4 3 2 29 29 H 1.08999 * 109.47137 * 300.00510 * 4 3 2 30 30 H 1.08995 * 109.47361 * 55.34887 * 5 4 3 31 31 H 1.09004 * 109.47287 * 295.34298 * 5 4 3 32 32 H 1.09008 * 109.46782 * 184.96228 * 7 6 5 33 33 H 1.09000 * 109.47270 * 64.96139 * 7 6 5 34 34 H 0.97006 * 119.99836 * 354.89989 * 8 7 6 35 35 H 0.96992 * 120.00407 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.48599 * 214.39905 * 19 6 5 37 37 H 1.08999 * 110.48732 * 337.04661 * 19 6 5 38 38 H 1.09003 * 110.71709 * 279.57206 * 20 19 6 39 39 H 1.08995 * 110.92909 * 156.29813 * 20 19 6 40 40 H 1.09000 * 110.49166 * 203.40934 * 21 20 19 41 41 H 1.08999 * 110.48637 * 80.76017 * 21 20 19 42 42 H 1.08996 * 110.03265 * 359.95160 * 22 6 5 43 43 H 1.08998 * 110.02967 * 121.38159 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3461 3.0602 0.1187 7 6 5.8357 2.3221 1.3663 8 7 5.1242 2.8269 2.5431 9 6 5.3176 2.2508 3.7461 10 8 6.0836 1.3114 3.8548 11 6 4.6063 2.7549 4.9219 12 1 3.9268 3.5888 4.8255 13 6 4.8029 2.1525 6.1708 14 7 5.6210 1.1401 6.2864 15 14 3.8947 2.7953 7.6712 16 1 2.5993 2.0824 7.8088 17 1 4.7182 2.5641 8.8851 18 1 3.6444 4.2505 7.5126 19 6 6.0218 2.4773 -1.1395 20 6 6.2660 3.7110 -2.0448 21 6 6.6613 4.8098 -1.0272 22 6 5.7519 4.5428 0.1901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8341 0.9763 -0.8892 29 1 3.8333 0.9765 0.8908 30 1 3.3543 3.4397 0.8465 31 1 3.4944 3.4031 -0.9276 32 1 6.9059 2.4879 1.4899 33 1 5.6437 1.2548 1.2557 34 1 4.5139 3.5760 2.4566 35 1 5.7569 0.7226 7.1513 36 1 6.9677 2.0022 -0.8791 37 1 5.3598 1.7659 -1.6332 38 1 5.3547 3.9861 -2.5758 39 1 7.0787 3.5242 -2.7467 40 1 6.4659 5.7997 -1.4394 41 1 7.7104 4.7119 -0.7484 42 1 4.8657 5.1753 0.1401 43 1 6.2978 4.7364 1.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358555210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -138.946560 kcal Electronic energy + Delta-G solvation = -21569.979236 eV Core-core repulsion = 18419.938903 eV Total energy + Delta-G solvation = -3150.040333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86143 -38.99153 -38.59405 -35.18499 -34.47280 -33.26552 -31.62981 -29.70869 -29.23746 -27.97061 -25.60888 -23.78140 -23.68641 -21.88391 -21.09449 -19.78375 -18.95507 -17.83831 -17.51535 -17.25155 -16.53272 -16.07561 -16.01911 -15.59367 -15.41609 -15.29003 -14.70195 -14.36938 -14.08224 -13.75054 -13.37913 -13.27047 -13.18135 -13.04451 -12.81524 -12.62592 -12.58208 -12.26381 -12.11073 -12.03346 -11.91083 -11.78691 -11.47429 -11.46087 -11.33423 -11.28957 -10.93989 -10.51827 -9.86614 -9.43725 -8.29651 -6.85652 1.38195 1.39955 1.55091 2.23845 2.47163 2.67689 3.15945 3.58271 3.62540 3.67293 3.85953 4.08092 4.15503 4.17686 4.28279 4.36946 4.41135 4.44681 4.50320 4.56069 4.61561 4.65731 4.81283 4.82542 4.92737 4.98271 4.99830 5.06560 5.08164 5.14857 5.22533 5.24071 5.29398 5.30842 5.45021 5.47873 5.53653 5.87966 6.23348 6.24644 6.30256 6.86353 7.55851 8.49799 8.67634 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.006007 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.646455 B = 4659.743388 C = 6180.648629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.406 6.406 4 C 0.062 3.938 5 C -0.091 4.091 6 C -0.058 4.058 7 C 0.147 3.853 8 N -0.748 5.748 9 C 0.538 3.462 10 O -0.635 6.635 11 C -0.574 4.574 12 H 0.084 0.916 13 C 0.029 3.971 14 N -0.823 5.823 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.249 1.249 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.116 4.116 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.392 0.608 35 H 0.274 0.726 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 4.794 -16.469 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 O -0.326 6.326 4 C -0.014 4.014 5 C -0.129 4.129 6 C -0.058 4.058 7 C 0.023 3.977 8 N -0.402 5.402 9 C 0.342 3.658 10 O -0.523 6.523 11 C -0.611 4.611 12 H 0.102 0.898 13 C -0.186 4.186 14 N -0.452 5.452 15 Si 0.815 3.185 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.172 1.172 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.154 4.154 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.226 0.774 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.370 4.144 -16.313 17.667 hybrid contribution -0.057 -0.189 1.114 1.132 sum -5.427 3.956 -15.198 16.616 Atomic orbital electron populations 1.21738 0.92162 1.03440 1.02842 1.22639 0.96932 0.83260 1.00069 1.87805 1.21751 1.27601 1.95484 1.22636 0.80613 0.98547 0.99629 1.21463 0.93946 0.94333 1.03148 1.21344 0.94525 0.96274 0.93666 1.21092 0.94539 0.96599 0.85517 1.45776 1.49348 1.37862 1.07221 1.18580 0.81770 0.82075 0.83356 1.90544 1.42640 1.32868 1.86245 1.21420 1.28148 1.18765 0.92721 0.89789 1.26961 0.94506 0.93497 1.03617 1.70190 1.30142 1.18983 1.25929 0.85048 0.78132 0.79897 0.75394 1.18669 1.19628 1.17212 1.22520 1.00199 0.98666 0.94103 1.22460 1.02120 0.93591 0.96870 1.22341 0.98844 0.99728 0.94815 1.22257 1.00345 0.93813 0.98969 0.89128 0.92897 0.91155 0.91946 0.95055 0.91775 0.95875 0.92250 0.89013 0.95521 0.95283 0.77399 0.91624 0.92027 0.90482 0.90242 0.90275 0.90040 0.92259 0.90341 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.05 1.25 6.66 71.98 0.48 1.73 16 3 O -0.41 -12.78 10.34 -148.98 -1.54 -14.32 16 4 C 0.06 1.90 5.38 71.98 0.39 2.28 16 5 C -0.09 -2.52 4.09 30.60 0.13 -2.39 16 6 C -0.06 -1.61 0.41 -51.46 -0.02 -1.63 16 7 C 0.15 5.90 3.60 86.38 0.31 6.21 16 8 N -0.75 -34.77 4.96 -467.41 -2.32 -37.09 16 9 C 0.54 32.28 7.75 86.36 0.67 32.95 16 10 O -0.64 -43.95 15.02 -4.33 -0.07 -44.01 16 11 C -0.57 -33.60 9.54 24.83 0.24 -33.36 16 12 H 0.08 4.45 7.85 -2.91 -0.02 4.42 16 13 C 0.03 1.66 5.50 85.31 0.47 2.13 16 14 N -0.82 -51.66 11.83 21.84 0.26 -51.40 16 15 Si 1.00 42.07 29.56 68.60 2.03 44.10 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 19 C -0.12 -2.65 5.74 31.69 0.18 -2.47 16 20 C -0.11 -1.97 6.91 31.91 0.22 -1.75 16 21 C -0.12 -2.34 6.83 31.67 0.22 -2.12 16 22 C -0.12 -2.90 5.71 31.32 0.18 -2.72 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.67 6.54 -2.39 -0.02 1.65 16 29 H 0.02 0.88 6.25 -2.39 -0.01 0.87 16 30 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.03 1.28 6.59 -2.39 -0.02 1.27 16 34 H 0.39 16.18 6.96 -92.70 -0.65 15.53 16 35 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 36 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 37 H 0.08 1.59 6.17 -2.39 -0.01 1.58 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.74 7.67 -2.39 -0.02 1.73 16 43 H 0.05 1.47 7.57 -2.39 -0.02 1.45 16 Total: -1.00 -77.47 339.61 2.89 -74.58 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.34 Total: 31.57 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 4.19 Total: -3.42 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.06 Total: -88.50 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -1.61 Total: -58.33 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -77.47 2.89 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358555210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.364 kcal (2) G-P(sol) polarization free energy of solvation -77.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds