Wall clock time and date at job start Mon Mar 30 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47497 * 89.99677 * 8 6 4 10 10 H 1.48500 * 109.47327 * 210.00233 * 8 6 4 11 11 H 1.48505 * 109.47080 * 330.00138 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.34771 * 119.99635 * 85.00546 * 12 2 1 14 14 O 1.21284 * 120.00644 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99767 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46655 * 299.99485 * 15 13 12 17 17 C 1.52992 * 109.47381 * 59.99495 * 15 13 12 18 18 C 1.53005 * 109.46830 * 179.97438 * 15 13 12 19 19 C 1.53171 * 109.54313 * 299.81745 * 18 15 13 20 20 C 1.53103 * 109.15849 * 183.24330 * 19 18 15 21 21 O 1.42911 * 109.48634 * 57.47629 * 20 19 18 22 22 C 1.42903 * 114.09418 * 298.88793 * 21 20 19 23 23 C 1.53099 * 109.41461 * 61.16183 * 22 21 20 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99599 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99818 * 265.00273 * 12 2 1 29 29 H 1.08994 * 109.47563 * 60.00397 * 16 15 13 30 30 H 1.09002 * 109.46778 * 180.02562 * 16 15 13 31 31 H 1.08999 * 109.47446 * 299.99726 * 16 15 13 32 32 H 1.09003 * 109.47058 * 60.00468 * 17 15 13 33 33 H 1.09002 * 109.47256 * 180.02562 * 17 15 13 34 34 H 1.08996 * 109.47294 * 300.00501 * 17 15 13 35 35 H 1.08997 * 109.54322 * 59.99999 * 18 15 13 36 36 H 1.09002 * 109.52523 * 303.06411 * 19 18 15 37 37 H 1.08997 * 109.52310 * 63.24914 * 19 18 15 38 38 H 1.08992 * 109.40853 * 297.49716 * 20 19 18 39 39 H 1.09001 * 109.49189 * 177.50880 * 20 19 18 40 40 H 1.08994 * 109.48512 * 301.17830 * 22 21 20 41 41 H 1.09005 * 109.48920 * 181.14167 * 22 21 20 42 42 H 1.08999 * 109.52041 * 182.48248 * 23 22 21 43 43 H 1.08996 * 109.52306 * 62.29391 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1764 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1584 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 6 4.0513 -1.2799 -3.3222 17 6 1.7044 -1.8823 -3.9314 18 6 2.7000 0.2542 -4.7590 19 6 1.2957 0.8030 -5.0289 20 6 1.3421 1.7225 -6.2523 21 8 1.8501 0.9977 -7.3743 22 6 3.1788 0.5027 -7.1960 23 6 3.2057 -0.4675 -6.0120 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9026 -0.5285 4.4375 28 1 2.2490 -1.6318 -1.1526 29 1 4.0146 -1.9803 -2.4879 30 1 4.4145 -1.7934 -4.2124 31 1 4.7243 -0.4581 -3.0774 32 1 0.7053 -1.4898 -4.1206 33 1 2.0676 -2.3966 -4.8213 34 1 1.6676 -2.5827 -3.0971 35 1 3.3724 1.0768 -4.5156 36 1 0.6122 -0.0239 -5.2220 37 1 0.9516 1.3660 -4.1613 38 1 1.9929 2.5713 -6.0429 39 1 0.3374 2.0812 -6.4760 40 1 3.8536 1.3355 -6.9989 41 1 3.4973 -0.0175 -8.0994 42 1 4.2265 -0.8122 -5.8467 43 1 2.5621 -1.3209 -6.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359369464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:20 Heat of formation + Delta-G solvation = -98.716070 kcal Electronic energy + Delta-G solvation = -22186.263231 eV Core-core repulsion = 19037.967423 eV Total energy + Delta-G solvation = -3148.295808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49207 -38.65396 -36.02626 -34.91761 -32.58580 -31.52076 -31.09394 -29.46699 -27.39250 -25.22720 -25.18454 -23.80165 -22.77575 -20.89569 -19.74163 -18.79019 -17.03841 -16.25015 -16.13823 -15.85491 -15.42694 -14.97224 -14.89112 -14.30043 -14.09337 -13.70898 -13.50572 -13.23906 -13.02116 -12.55757 -12.31754 -12.21588 -12.08649 -11.86189 -11.69152 -11.65143 -11.30974 -11.16109 -10.93897 -10.82375 -10.63496 -10.52858 -10.19727 -10.09559 -9.67948 -9.51618 -9.23651 -8.82854 -8.76171 -8.12315 -6.22156 -4.24484 3.21623 3.25735 3.34236 3.38574 3.86178 3.91629 4.30500 4.58896 4.75503 4.79865 5.01775 5.08228 5.12761 5.20033 5.23804 5.29080 5.38219 5.50088 5.64188 5.66189 5.66977 5.77525 5.83004 5.88272 5.94455 6.02501 6.06172 6.17160 6.28063 6.30510 6.34799 6.49056 6.50959 6.57126 6.85419 7.18271 7.19557 7.31485 7.52548 8.15629 8.54144 8.75291 8.96434 9.39130 10.90097 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.004830 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.192124 B = 5795.839049 C = 6244.120986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.514 3.486 14 O -0.554 6.554 15 C -0.078 4.078 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.059 4.059 19 C -0.163 4.163 20 C 0.063 3.937 21 O -0.389 6.389 22 C 0.062 3.938 23 C -0.155 4.155 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -0.744 -18.526 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.346 5.346 13 C 0.299 3.701 14 O -0.434 6.434 15 C -0.081 4.081 16 C -0.199 4.199 17 C -0.201 4.201 18 C -0.078 4.078 19 C -0.200 4.200 20 C -0.014 4.014 21 O -0.308 6.308 22 C -0.015 4.015 23 C -0.192 4.192 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.975 0.058 -18.482 18.508 hybrid contribution -0.308 0.259 0.706 0.813 sum 0.666 0.317 -17.776 17.792 Atomic orbital electron populations 1.22440 0.99388 1.00770 0.99218 1.19086 0.90065 0.94644 0.82954 0.93477 1.21044 1.33215 1.14369 0.88579 0.90279 1.24833 0.95492 0.96688 0.95535 1.69873 1.44954 1.40116 0.98041 0.86869 0.80530 0.83622 0.77397 1.20335 1.22181 1.18719 1.46195 1.64865 1.13760 1.09773 1.20347 0.77983 0.87215 0.84555 1.90559 1.51656 1.16236 1.84899 1.20781 0.97032 0.96420 0.93899 1.21892 0.94538 1.01346 1.02134 1.21960 0.99218 0.96868 1.02008 1.20898 0.97642 0.96865 0.92411 1.22547 0.97099 1.00640 0.99756 1.22597 0.99149 0.93570 0.86075 1.87886 1.30423 1.72950 1.39508 1.22536 0.84309 0.96340 0.98291 1.22399 1.02138 0.99448 0.95265 0.93535 0.94615 0.92895 0.92305 0.77262 0.91741 0.91665 0.92135 0.91888 0.91578 0.92002 0.90675 0.91546 0.87795 0.93375 0.89236 0.93458 0.89283 0.90752 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.24 5.59 2.15 -69.08 -0.15 5.44 16 3 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 4 C -0.53 -14.36 9.31 -34.44 -0.32 -14.68 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.70 -13.62 4.85 -54.93 -0.27 -13.89 16 13 C 0.51 9.33 6.17 -10.98 -0.07 9.26 16 14 O -0.55 -11.80 13.35 5.55 0.07 -11.73 16 15 C -0.08 -1.04 0.43 -155.66 -0.07 -1.11 16 16 C -0.14 -1.67 8.03 37.16 0.30 -1.37 16 17 C -0.14 -1.66 7.67 37.15 0.28 -1.37 16 18 C -0.06 -0.75 1.27 -90.43 -0.11 -0.87 16 19 C -0.16 -2.19 4.78 -26.59 -0.13 -2.32 16 20 C 0.06 0.76 6.84 37.21 0.25 1.01 16 21 O -0.39 -4.86 10.77 -35.23 -0.38 -5.24 16 22 C 0.06 0.63 6.84 37.21 0.25 0.88 16 23 C -0.15 -1.56 4.70 -26.59 -0.12 -1.68 16 24 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.39 6.88 7.38 -40.82 -0.30 6.58 16 29 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 30 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 33 H 0.07 0.64 6.37 -51.93 -0.33 0.30 16 34 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.07 0.87 6.28 -51.93 -0.33 0.54 16 37 H 0.10 1.69 5.62 -51.93 -0.29 1.39 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 43 H 0.07 0.74 6.28 -51.93 -0.33 0.42 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -30.71 318.24 -5.66 -36.37 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.87 Total: 5.60 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.36 Total: -7.95 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.51 Total: -39.48 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.31 Total: -16.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.71 -5.66 -36.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359369464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.349 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds