Wall clock time and date at job start Mon Mar 30 2020 00:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47497 * 89.99677 * 8 6 4 10 10 H 1.48500 * 109.47327 * 210.00233 * 8 6 4 11 11 H 1.48505 * 109.47080 * 330.00138 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.34771 * 119.99635 * 85.00546 * 12 2 1 14 14 O 1.21284 * 120.00644 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99767 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46655 * 299.99485 * 15 13 12 17 17 C 1.52992 * 109.47381 * 59.99495 * 15 13 12 18 18 C 1.53005 * 109.46830 * 179.97438 * 15 13 12 19 19 C 1.53171 * 109.54313 * 299.81745 * 18 15 13 20 20 C 1.53103 * 109.15849 * 183.24330 * 19 18 15 21 21 O 1.42911 * 109.48634 * 57.47629 * 20 19 18 22 22 C 1.42903 * 114.09418 * 298.88793 * 21 20 19 23 23 C 1.53099 * 109.41461 * 61.16183 * 22 21 20 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99599 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99818 * 265.00273 * 12 2 1 29 29 H 1.08994 * 109.47563 * 60.00397 * 16 15 13 30 30 H 1.09002 * 109.46778 * 180.02562 * 16 15 13 31 31 H 1.08999 * 109.47446 * 299.99726 * 16 15 13 32 32 H 1.09003 * 109.47058 * 60.00468 * 17 15 13 33 33 H 1.09002 * 109.47256 * 180.02562 * 17 15 13 34 34 H 1.08996 * 109.47294 * 300.00501 * 17 15 13 35 35 H 1.08997 * 109.54322 * 59.99999 * 18 15 13 36 36 H 1.09002 * 109.52523 * 303.06411 * 19 18 15 37 37 H 1.08997 * 109.52310 * 63.24914 * 19 18 15 38 38 H 1.08992 * 109.40853 * 297.49716 * 20 19 18 39 39 H 1.09001 * 109.49189 * 177.50880 * 20 19 18 40 40 H 1.08994 * 109.48512 * 301.17830 * 22 21 20 41 41 H 1.09005 * 109.48920 * 181.14167 * 22 21 20 42 42 H 1.08999 * 109.52041 * 182.48248 * 23 22 21 43 43 H 1.08996 * 109.52306 * 62.29391 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1764 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1584 -2.4117 15 6 2.6489 -0.7289 -3.5877 16 6 4.0513 -1.2799 -3.3222 17 6 1.7044 -1.8823 -3.9314 18 6 2.7000 0.2542 -4.7590 19 6 1.2957 0.8030 -5.0289 20 6 1.3421 1.7225 -6.2523 21 8 1.8501 0.9977 -7.3743 22 6 3.1788 0.5027 -7.1960 23 6 3.2057 -0.4675 -6.0120 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9026 -0.5285 4.4375 28 1 2.2490 -1.6318 -1.1526 29 1 4.0146 -1.9803 -2.4879 30 1 4.4145 -1.7934 -4.2124 31 1 4.7243 -0.4581 -3.0774 32 1 0.7053 -1.4898 -4.1206 33 1 2.0676 -2.3966 -4.8213 34 1 1.6676 -2.5827 -3.0971 35 1 3.3724 1.0768 -4.5156 36 1 0.6122 -0.0239 -5.2220 37 1 0.9516 1.3660 -4.1613 38 1 1.9929 2.5713 -6.0429 39 1 0.3374 2.0812 -6.4760 40 1 3.8536 1.3355 -6.9989 41 1 3.4973 -0.0175 -8.0994 42 1 4.2265 -0.8122 -5.8467 43 1 2.5621 -1.3209 -6.2256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359369464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:19 Heat of formation + Delta-G solvation = -120.230391 kcal Electronic energy + Delta-G solvation = -22187.196162 eV Core-core repulsion = 19037.967423 eV Total energy + Delta-G solvation = -3149.228739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69772 -39.83465 -37.31259 -36.56538 -34.46531 -32.84414 -31.98695 -31.08177 -28.32363 -27.23734 -26.18119 -24.87635 -24.01798 -22.37777 -21.15362 -20.11340 -18.71648 -17.76057 -17.33785 -16.95096 -16.83120 -16.38815 -16.10777 -15.50116 -15.36906 -15.04050 -14.83412 -14.65128 -14.38059 -14.14399 -13.85010 -13.52244 -13.21780 -13.13204 -12.97698 -12.80903 -12.75712 -12.59477 -12.24437 -12.13212 -11.83171 -11.68865 -11.60531 -11.49999 -11.29074 -11.03193 -10.87751 -10.49491 -10.21981 -9.81246 -8.39515 -6.44976 1.25287 1.33574 1.42796 1.81018 2.24446 2.47009 2.96870 3.01318 3.57193 3.72652 3.76837 4.12153 4.15632 4.18152 4.25911 4.34504 4.41353 4.44540 4.54445 4.65066 4.69035 4.73798 4.77251 4.81016 4.88193 4.90602 4.92246 4.99529 5.03817 5.11452 5.14463 5.23968 5.29349 5.32165 5.41395 5.46125 5.54933 5.69645 6.13631 6.30580 6.56750 6.90902 7.18861 7.49305 8.75787 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.004830 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.192124 B = 5795.839049 C = 6244.120986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.242 3.758 3 H 0.019 0.981 4 C -0.532 4.532 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.587 6.587 15 C -0.069 4.069 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.160 4.160 20 C 0.066 3.934 21 O -0.400 6.400 22 C 0.055 3.945 23 C -0.146 4.146 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.270 0.730 28 H 0.404 0.596 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -1.522 -20.711 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.137 3.863 3 H 0.037 0.963 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.186 1.186 10 H -0.220 1.220 11 H -0.190 1.190 12 N -0.348 5.348 13 C 0.296 3.704 14 O -0.469 6.469 15 C -0.072 4.072 16 C -0.198 4.198 17 C -0.198 4.198 18 C -0.078 4.078 19 C -0.198 4.198 20 C -0.011 4.011 21 O -0.320 6.320 22 C -0.021 4.021 23 C -0.184 4.184 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.239 0.761 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.881 -0.742 -20.692 20.724 hybrid contribution -0.207 0.492 1.347 1.449 sum 0.674 -0.250 -19.345 19.358 Atomic orbital electron populations 1.22326 0.97958 1.01563 0.99283 1.18726 0.91090 0.93054 0.83449 0.96272 1.21256 1.32278 1.13511 0.89931 0.92546 1.25535 0.96815 0.99238 0.95379 1.69975 1.46698 1.41893 0.98640 0.86012 0.79839 0.80439 0.77099 1.18568 1.21951 1.18971 1.46054 1.65342 1.14213 1.09190 1.21294 0.76808 0.86955 0.85313 1.90554 1.52817 1.17999 1.85512 1.20790 0.98254 0.96791 0.91340 1.21927 0.93065 1.01045 1.03736 1.21983 0.98325 0.96071 1.03437 1.20894 0.96851 0.96467 0.93549 1.22449 0.97677 1.00640 0.99007 1.22547 0.99718 0.93174 0.85657 1.87874 1.31703 1.73023 1.39366 1.22768 0.83282 0.96654 0.99439 1.22370 1.03344 0.99244 0.93405 0.94235 0.93689 0.91715 0.92062 0.76064 0.91918 0.88248 0.93368 0.92712 0.88652 0.91720 0.92625 0.91098 0.91029 0.93710 0.88397 0.93309 0.86838 0.88671 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 8.96 71.98 0.65 -6.05 16 2 C 0.24 11.50 2.15 44.25 0.10 11.59 16 3 H 0.02 1.03 6.64 -2.39 -0.02 1.02 16 4 C -0.53 -28.96 9.31 25.60 0.24 -28.72 16 5 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 6 C 0.03 1.70 5.45 84.65 0.46 2.16 16 7 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 8 Si 0.94 44.98 24.37 68.60 1.67 46.66 16 9 H -0.26 -11.70 6.87 99.48 0.68 -11.02 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16 12 N -0.70 -27.18 4.85 -446.08 -2.17 -29.34 16 13 C 0.51 18.36 6.17 87.66 0.54 18.90 16 14 O -0.59 -25.47 13.35 -3.04 -0.04 -25.51 16 15 C -0.07 -1.72 0.43 -52.93 -0.02 -1.74 16 16 C -0.14 -2.97 8.03 71.98 0.58 -2.40 16 17 C -0.14 -2.88 7.67 71.98 0.55 -2.32 16 18 C -0.06 -1.40 1.27 -10.67 -0.01 -1.41 16 19 C -0.16 -4.19 4.78 30.69 0.15 -4.04 16 20 C 0.07 1.53 6.84 72.02 0.49 2.02 16 21 O -0.40 -9.14 10.77 -148.98 -1.60 -10.75 16 22 C 0.05 0.94 6.84 72.02 0.49 1.43 16 23 C -0.15 -2.43 4.70 30.69 0.14 -2.29 16 24 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 25 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.40 13.93 7.38 -92.71 -0.68 13.25 16 29 H 0.06 1.36 7.56 -2.39 -0.02 1.34 16 30 H 0.10 1.44 6.51 -2.39 -0.02 1.43 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.22 6.36 -2.39 -0.02 1.21 16 33 H 0.09 1.42 6.37 -2.39 -0.02 1.40 16 34 H 0.06 1.29 7.56 -2.39 -0.02 1.28 16 35 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.07 1.76 6.28 -2.39 -0.01 1.74 16 37 H 0.07 2.37 5.62 -2.39 -0.01 2.35 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.09 1.22 6.63 -2.39 -0.02 1.20 16 43 H 0.08 1.29 6.28 -2.39 -0.02 1.28 16 Total: -1.00 -67.02 318.24 2.75 -64.27 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.24 Total: 23.09 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.35 Total: -12.86 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.87 Total: -84.90 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.64 Total: -36.25 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.67 Total: 46.66 kcal Total: -67.02 2.75 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359369464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.963 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds