Wall clock time and date at job start Mon Mar 30 2020 00:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46907 * 300.00000 * 15 13 12 17 17 C 1.52991 * 109.47442 * 60.00048 * 15 13 12 18 18 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 19 19 C 1.53176 * 109.54484 * 299.81782 * 18 15 13 20 20 C 1.53104 * 109.16034 * 183.24355 * 19 18 15 21 21 O 1.42909 * 109.48317 * 57.47348 * 20 19 18 22 22 C 1.42906 * 114.09985 * 298.89033 * 21 20 19 23 23 C 1.53088 * 109.41498 * 61.15882 * 22 21 20 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 29 29 H 1.08995 * 109.47576 * 59.99874 * 16 15 13 30 30 H 1.08995 * 109.47004 * 180.02562 * 16 15 13 31 31 H 1.09009 * 109.47151 * 300.00007 * 16 15 13 32 32 H 1.09001 * 109.47332 * 59.99409 * 17 15 13 33 33 H 1.08995 * 109.47213 * 179.97438 * 17 15 13 34 34 H 1.09003 * 109.47076 * 300.00508 * 17 15 13 35 35 H 1.09000 * 109.54842 * 59.99759 * 18 15 13 36 36 H 1.09003 * 109.52043 * 303.06342 * 19 18 15 37 37 H 1.09001 * 109.52181 * 63.24824 * 19 18 15 38 38 H 1.08995 * 109.40390 * 297.49751 * 20 19 18 39 39 H 1.08990 * 109.49449 * 177.50473 * 20 19 18 40 40 H 1.08997 * 109.48152 * 301.17431 * 22 21 20 41 41 H 1.09001 * 109.48472 * 181.14427 * 22 21 20 42 42 H 1.08996 * 109.52515 * 182.48802 * 23 22 21 43 43 H 1.09000 * 109.52287 * 62.29622 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 1.7063 -1.8826 3.9315 17 6 4.0525 -1.2783 3.3216 18 6 2.7006 0.2547 4.7589 19 6 3.6480 1.4091 4.4183 20 6 3.7550 2.3443 5.6259 21 8 4.2097 1.6058 6.7618 22 6 3.3377 0.5440 7.1547 23 6 3.2157 -0.4645 6.0095 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.2490 -1.6316 1.1527 29 1 1.6697 -2.5830 3.0972 30 1 2.0697 -2.3960 4.8217 31 1 0.7069 -1.4907 4.1211 32 1 4.7248 -0.4560 3.0764 33 1 4.4164 -1.7916 4.2116 34 1 4.0160 -1.9786 2.4871 35 1 1.7016 0.6469 4.9493 36 1 4.6343 1.0121 4.1781 37 1 3.2578 1.9602 3.5626 38 1 2.7761 2.7734 5.8395 39 1 4.4622 3.1437 5.4053 40 1 2.3534 0.9496 7.3883 41 1 3.7443 0.0466 8.0353 42 1 2.5166 -1.2521 6.2906 43 1 4.1929 -0.9005 5.8023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359369465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:21 Heat of formation + Delta-G solvation = -126.580226 kcal Electronic energy + Delta-G solvation = -22101.111347 eV Core-core repulsion = 18951.607258 eV Total energy + Delta-G solvation = -3149.504089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.64593 -39.78624 -37.21692 -36.49435 -34.39852 -32.59751 -31.97987 -30.45424 -28.31148 -27.34981 -26.16980 -24.81321 -23.98510 -22.37401 -21.09812 -20.04633 -18.54361 -17.40747 -17.30297 -16.90689 -16.85596 -16.29017 -16.08500 -15.44422 -15.29560 -14.99604 -14.69227 -14.41833 -14.35292 -13.78478 -13.49589 -13.24192 -13.11234 -12.88593 -12.85909 -12.77100 -12.73865 -12.58847 -12.27635 -12.21172 -12.11500 -11.83288 -11.64835 -11.50022 -11.10874 -11.03471 -10.62395 -10.47157 -10.19712 -9.66630 -8.18179 -6.35787 1.44102 1.44446 1.55252 1.89247 2.35361 2.65164 3.00663 3.12209 3.59239 3.77230 3.77851 4.13271 4.16674 4.20977 4.26066 4.33999 4.42617 4.65486 4.69975 4.75217 4.77715 4.80602 4.89059 4.90713 4.92033 4.92690 5.03837 5.09321 5.11687 5.14498 5.24123 5.30183 5.39888 5.48779 5.54924 5.64033 5.70297 5.92107 6.10486 6.30054 6.72751 7.02025 7.32587 7.61716 8.88002 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033880 B = 0.004424 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.256967 B = 6327.115826 C = 6474.810768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.704 5.704 13 C 0.504 3.496 14 O -0.594 6.594 15 C -0.069 4.069 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.058 4.058 19 C -0.161 4.161 20 C 0.067 3.933 21 O -0.400 6.400 22 C 0.054 3.946 23 C -0.145 4.145 24 H 0.010 0.990 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -7.160 16.959 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.204 1.204 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.476 6.476 15 C -0.072 4.072 16 C -0.195 4.195 17 C -0.197 4.197 18 C -0.077 4.077 19 C -0.199 4.199 20 C -0.010 4.010 21 O -0.319 6.319 22 C -0.022 4.022 23 C -0.183 4.183 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.236 0.764 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.830 -6.185 16.927 18.658 hybrid contribution -0.273 -0.101 -1.541 1.568 sum 4.557 -6.287 15.386 17.235 Atomic orbital electron populations 1.21876 0.98482 0.99304 0.99358 1.18286 0.90957 0.91770 0.82191 0.98718 1.21543 1.32476 1.13508 0.90853 0.90976 1.25804 0.94843 0.95582 1.02336 1.70059 1.37012 1.24029 1.24552 0.85351 0.77750 0.79242 0.78035 1.20407 1.18287 1.20971 1.46282 1.65144 1.14029 1.09755 1.21344 0.77014 0.86955 0.85565 1.90557 1.52901 1.18285 1.85818 1.20797 0.98275 0.96714 0.91443 1.21911 0.97894 0.96024 1.03668 1.21969 0.93191 1.00941 1.03620 1.20883 0.98676 0.94274 0.93826 1.22443 1.00009 0.98206 0.99219 1.22521 0.99711 0.93740 0.84985 1.87871 1.49388 1.47131 1.47549 1.22786 0.94240 0.87692 0.97475 1.22369 1.03233 0.98894 0.93776 0.97138 0.91653 0.94168 0.92600 0.76369 0.91601 0.88198 0.93269 0.93407 0.88469 0.91702 0.92669 0.91382 0.91551 0.93632 0.88545 0.93238 0.86670 0.88374 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.08 16 2 C 0.27 14.21 2.56 44.24 0.11 14.32 16 3 H -0.01 -0.32 7.58 -2.38 -0.02 -0.33 16 4 C -0.55 -28.98 8.73 25.60 0.22 -28.75 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.70 -29.21 4.85 -446.09 -2.17 -31.37 16 13 C 0.50 19.84 6.17 87.66 0.54 20.38 16 14 O -0.59 -28.62 13.35 -3.04 -0.04 -28.66 16 15 C -0.07 -1.86 0.43 -52.93 -0.02 -1.88 16 16 C -0.14 -2.90 8.02 71.98 0.58 -2.32 16 17 C -0.14 -3.19 7.67 71.98 0.55 -2.63 16 18 C -0.06 -1.49 1.27 -10.67 -0.01 -1.51 16 19 C -0.16 -4.74 4.78 30.69 0.15 -4.59 16 20 C 0.07 1.73 6.84 72.02 0.49 2.22 16 21 O -0.40 -9.81 10.77 -148.98 -1.60 -11.41 16 22 C 0.05 0.99 6.84 72.01 0.49 1.48 16 23 C -0.15 -2.58 4.70 30.69 0.14 -2.44 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.40 14.18 7.37 -92.71 -0.68 13.50 16 29 H 0.06 1.35 7.56 -2.39 -0.02 1.33 16 30 H 0.10 1.42 6.51 -2.39 -0.02 1.41 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.24 6.37 -2.39 -0.02 1.23 16 33 H 0.10 1.59 6.36 -2.39 -0.02 1.58 16 34 H 0.06 1.43 7.57 -2.39 -0.02 1.41 16 35 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.07 1.93 6.28 -2.39 -0.01 1.92 16 37 H 0.07 2.50 5.62 -2.39 -0.01 2.48 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.30 6.62 -2.39 -0.02 1.28 16 43 H 0.08 1.39 6.28 -2.39 -0.01 1.37 16 Total: -1.00 -67.40 325.06 3.14 -64.27 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.31 Total: 26.52 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.36 Total: -10.59 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.92 Total: -84.17 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.64 Total: -40.07 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -67.40 3.14 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359369465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.312 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds