Wall clock time and date at job start Mon Mar 30 2020 01:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47369 * 2 1 4 4 C 1.42895 * 114.00155 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.56158 * 355.68955 * 4 3 2 6 6 C 1.52999 * 117.49658 * 141.38028 * 4 3 2 7 7 C 1.53001 * 117.49864 * 210.00371 * 4 3 2 8 8 H 1.09002 * 117.49822 * 145.02244 * 7 4 3 9 9 C 1.50701 * 117.51956 * 359.97438 * 7 4 3 10 10 O 1.21289 * 119.99950 * 0.12336 * 9 7 4 11 11 N 1.34779 * 120.00184 * 180.11574 * 9 7 4 12 12 C 1.46500 * 119.99623 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46772 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46759 * 300.00068 * 13 12 11 15 15 C 1.52995 * 109.47002 * 59.99680 * 13 12 11 16 16 C 1.52998 * 109.47094 * 180.02562 * 13 12 11 17 17 C 1.50702 * 109.47101 * 179.97438 * 16 13 12 18 18 H 1.08002 * 119.99947 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00159 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00086 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46861 * 89.99844 * 21 19 17 23 23 H 1.48497 * 109.47098 * 209.99718 * 21 19 17 24 24 H 1.48502 * 109.46967 * 330.00230 * 21 19 17 25 25 H 1.08999 * 109.46868 * 299.99606 * 1 2 3 26 26 H 1.08998 * 109.47016 * 59.99529 * 1 2 3 27 27 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46958 * 240.00568 * 2 1 3 29 29 H 1.08993 * 109.47371 * 120.00781 * 2 1 3 30 30 H 1.09004 * 117.50150 * 0.02562 * 6 4 3 31 31 H 1.09004 * 117.49681 * 214.97534 * 6 4 3 32 32 H 0.97001 * 119.99556 * 0.02562 * 11 9 7 33 33 H 1.08998 * 109.47357 * 299.99948 * 12 11 9 34 34 H 1.09001 * 109.47335 * 60.00391 * 12 11 9 35 35 H 1.08998 * 109.47079 * 60.00219 * 14 13 12 36 36 H 1.09003 * 109.46857 * 180.02562 * 14 13 12 37 37 H 1.09001 * 109.47084 * 299.99909 * 14 13 12 38 38 H 1.08998 * 109.47222 * 60.00455 * 15 13 12 39 39 H 1.09009 * 109.46765 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47661 * 299.99805 * 15 13 12 41 41 H 1.08998 * 109.47037 * 299.99488 * 16 13 12 42 42 H 1.09001 * 109.47333 * 59.99734 * 16 13 12 43 43 H 0.96996 * 120.00081 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9772 0.5197 0.0730 6 6 4.0510 2.5730 -0.8478 7 6 4.0426 2.6873 0.6780 8 1 4.9914 2.5544 1.1979 9 6 3.0972 3.6853 1.2955 10 8 1.8999 3.4981 1.2448 11 7 3.5820 4.7857 1.9041 12 6 2.6628 5.7555 2.5048 13 6 3.4645 6.9022 3.1241 14 6 4.3975 6.3478 4.2027 15 6 4.2932 7.5901 2.0374 16 6 2.5046 7.9147 3.7520 17 6 3.2943 9.0438 4.3625 18 1 4.3730 9.0394 4.3084 19 6 2.6398 10.0824 4.9901 20 7 1.3263 10.0875 5.0564 21 14 3.6187 11.4815 5.7475 22 1 3.8206 12.5491 4.7350 23 1 2.8753 12.0343 6.9080 24 1 4.9383 10.9736 6.2011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.3724 3.2194 -1.4043 31 1 5.0054 2.3648 -1.3316 32 1 4.5395 4.9356 1.9443 33 1 1.9984 6.1507 1.7364 34 1 2.0722 5.2652 3.2787 35 1 5.0814 5.6263 3.7556 36 1 4.9684 7.1647 4.6442 37 1 3.8072 5.8576 4.9768 38 1 3.6285 7.9850 1.2691 39 1 4.8647 8.4068 2.4787 40 1 4.9771 6.8686 1.5905 41 1 1.8397 8.3096 2.9839 42 1 1.9146 7.4242 4.5263 43 1 0.8658 10.8183 5.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359757883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:00 Heat of formation + Delta-G solvation = -94.252371 kcal Electronic energy + Delta-G solvation = -20869.476507 eV Core-core repulsion = 17721.374259 eV Total energy + Delta-G solvation = -3148.102248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05993 -39.34322 -38.33301 -36.00789 -35.17879 -33.85597 -31.64019 -29.17991 -28.01606 -27.96160 -25.52835 -23.96663 -23.73062 -22.98849 -21.12259 -19.79499 -18.64853 -18.37329 -17.10020 -16.79520 -16.47328 -16.40309 -16.26135 -15.68640 -15.16377 -14.96276 -14.63209 -14.38612 -13.95732 -13.93392 -13.70177 -13.54220 -13.26044 -12.99707 -12.86828 -12.71978 -12.58872 -12.34147 -12.22829 -12.08231 -11.98189 -11.84754 -11.54165 -11.37987 -11.09970 -10.88905 -10.66927 -10.52052 -10.01368 -9.97284 -8.14268 -6.22642 1.42316 1.43132 1.53575 1.62272 2.25063 2.45083 2.65863 2.93713 3.20001 3.81747 3.87134 3.95633 4.01974 4.07980 4.21172 4.21183 4.23263 4.44252 4.51437 4.52587 4.69553 4.71895 4.77854 4.86610 4.90559 4.96682 5.03012 5.07801 5.11240 5.12123 5.26773 5.41453 5.49135 5.49510 5.53464 5.59611 5.79733 5.89293 6.29659 6.44192 6.70842 6.92737 7.41852 7.45387 8.98511 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037361 B = 0.003345 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.261117 B = 8368.867637 C = 8826.568856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.367 6.367 4 C 0.040 3.960 5 H 0.154 0.846 6 C -0.147 4.147 7 C -0.202 4.202 8 H 0.164 0.836 9 C 0.524 3.476 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.144 3.856 13 C -0.064 4.064 14 C -0.120 4.120 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.940 5.940 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.258 1.258 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.413 0.587 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.071 0.929 41 H -0.017 1.017 42 H -0.016 1.016 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -20.070 -11.218 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.286 6.286 4 C -0.019 4.019 5 H 0.171 0.829 6 C -0.185 4.185 7 C -0.223 4.223 8 H 0.182 0.818 9 C 0.312 3.688 10 O -0.450 6.450 11 N -0.363 5.363 12 C 0.020 3.980 13 C -0.065 4.065 14 C -0.177 4.177 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.581 5.581 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.182 1.182 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.507 -19.945 -11.179 24.762 hybrid contribution -0.084 1.219 0.786 1.453 sum 9.423 -18.726 -10.393 23.398 Atomic orbital electron populations 1.21748 0.94145 1.03082 1.01827 1.22716 0.95672 0.83043 1.01153 1.88158 1.19195 1.27441 1.93790 1.22994 0.82734 0.94355 1.01825 0.82851 1.23505 1.04017 1.01213 0.89759 1.22870 1.01743 0.99427 0.98279 0.81826 1.20384 0.88772 0.81879 0.77794 1.90739 1.18092 1.76700 1.59498 1.45957 1.10955 1.21999 1.57387 1.21129 0.92037 0.89162 0.95710 1.20705 0.96194 0.93437 0.96125 1.21686 0.98424 1.00298 0.97338 1.21683 0.98980 1.00312 0.96777 1.18973 0.93790 0.93304 0.93718 1.21596 0.93835 1.05346 1.34367 0.90763 1.25988 0.95737 1.01369 0.97257 1.70132 1.09069 1.33457 1.45480 0.85509 0.78964 0.79164 0.77790 1.20112 1.21573 1.18177 0.94060 0.92829 0.88540 0.91168 0.92518 0.90220 0.83155 0.74942 0.94361 0.94209 0.90965 0.92449 0.94633 0.94713 0.92402 0.91000 0.99870 0.99804 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.05 0.94 6.53 71.98 0.47 1.41 16 3 O -0.37 -9.96 8.48 -127.83 -1.08 -11.04 16 4 C 0.04 0.73 6.40 30.59 0.20 0.93 16 5 H 0.15 1.56 7.93 -2.39 -0.02 1.54 16 6 C -0.15 -2.39 10.18 30.60 0.31 -2.08 16 7 C -0.20 -3.94 6.19 -11.54 -0.07 -4.01 16 8 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.52 16.33 7.61 87.66 0.67 17.00 16 10 O -0.57 -23.92 14.93 18.09 0.27 -23.64 16 11 N -0.71 -20.76 4.96 -463.04 -2.30 -23.06 16 12 C 0.14 5.49 4.56 86.38 0.39 5.89 16 13 C -0.06 -2.50 0.54 -52.18 -0.03 -2.53 16 14 C -0.12 -4.11 8.05 71.99 0.58 -3.53 16 15 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -27.93 7.65 25.60 0.20 -27.73 16 18 H 0.07 3.75 5.68 -2.91 -0.02 3.73 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 21 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.15 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.41 9.15 6.16 -92.71 -0.57 8.58 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 36 H 0.06 2.08 6.61 -2.39 -0.02 2.07 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 40 H 0.07 1.85 6.86 -2.39 -0.02 1.84 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -76.66 347.08 4.23 -72.44 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.41 Total: 15.31 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.62 Total: -18.11 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.01 Total: -80.92 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.81 Total: -34.68 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.66 4.23 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.817 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds