Wall clock time and date at job start Mon Mar 30 2020 01:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.42906 * 113.99995 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54292 * 4.41416 * 4 3 2 6 6 C 1.52999 * 117.50080 * 218.74794 * 4 3 2 7 7 C 1.52998 * 117.49944 * 150.08453 * 4 3 2 8 8 H 1.08998 * 117.49729 * 214.97959 * 7 4 3 9 9 C 1.50693 * 117.50134 * 359.97438 * 7 4 3 10 10 O 1.21284 * 119.99877 * 0.02562 * 9 7 4 11 11 N 1.34776 * 120.00169 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99967 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46988 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47116 * 299.99696 * 13 12 11 15 15 C 1.53001 * 109.47441 * 59.99718 * 13 12 11 16 16 C 1.53005 * 109.47139 * 179.97438 * 13 12 11 17 17 C 1.50707 * 109.47043 * 180.02562 * 16 13 12 18 18 H 1.07992 * 120.00034 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99794 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47009 * 89.99929 * 21 19 17 23 23 H 1.48497 * 109.47084 * 209.99878 * 21 19 17 24 24 H 1.48494 * 109.46948 * 329.99880 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 30 30 H 1.08997 * 117.49727 * 359.97438 * 6 4 3 31 31 H 1.08996 * 117.49875 * 145.02033 * 6 4 3 32 32 H 0.96994 * 119.99826 * 359.97438 * 11 9 7 33 33 H 1.08998 * 109.47254 * 299.99470 * 12 11 9 34 34 H 1.08996 * 109.47487 * 60.00091 * 12 11 9 35 35 H 1.08999 * 109.46914 * 60.00112 * 14 13 12 36 36 H 1.09000 * 109.47155 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.47357 * 299.99795 * 14 13 12 38 38 H 1.09007 * 109.46637 * 59.99573 * 15 13 12 39 39 H 1.08994 * 109.47421 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47140 * 300.00225 * 15 13 12 41 41 H 1.09001 * 109.46676 * 300.00039 * 16 13 12 42 42 H 1.09001 * 109.46802 * 60.00126 * 16 13 12 43 43 H 0.97001 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5197 -0.0747 6 6 4.0513 2.5711 0.8501 7 6 4.0426 2.6884 -0.6762 8 1 4.9913 2.5563 -1.1964 9 6 3.0967 3.6864 -1.2929 10 8 1.8995 3.4996 -1.2406 11 7 3.5812 4.7864 -1.9025 12 6 2.6616 5.7569 -2.5015 13 6 3.4630 6.9028 -3.1223 14 6 4.2941 7.5904 -2.0373 15 6 4.3935 6.3479 -4.2026 16 6 2.5026 7.9161 -3.7485 17 6 3.2920 9.0446 -4.3606 18 1 4.3706 9.0398 -4.3079 19 6 2.6370 10.0836 -4.9870 20 7 1.3234 10.0896 -5.0508 21 14 3.6154 11.4827 -5.7450 22 1 3.9303 11.1570 -7.1593 23 1 2.8150 12.7323 -5.6913 24 1 4.8784 11.6708 -4.9872 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.3728 3.2163 1.4082 31 1 5.0056 2.3619 1.3332 32 1 4.5386 4.9360 -1.9439 33 1 2.0692 5.2670 -3.2743 34 1 1.9990 6.1526 -1.7319 35 1 4.9783 6.8683 -1.5916 36 1 4.8653 8.4065 -2.4796 37 1 3.6312 7.9858 -1.2677 38 1 3.8013 5.8580 -4.9756 39 1 4.9641 7.1643 -4.6452 40 1 5.0777 5.6258 -3.7569 41 1 1.9108 7.4259 -4.5216 42 1 1.8394 8.3115 -2.9792 43 1 0.8626 10.8204 -5.4918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359757885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:04 Heat of formation + Delta-G solvation = -73.518706 kcal Electronic energy + Delta-G solvation = -20868.506035 eV Core-core repulsion = 17721.302866 eV Total energy + Delta-G solvation = -3147.203169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88409 -38.21095 -36.90722 -35.10699 -33.44888 -32.01053 -30.83748 -27.21061 -26.55220 -26.47711 -23.98636 -22.97953 -22.46274 -22.13973 -19.87919 -18.32825 -17.51531 -16.34564 -15.90295 -15.73393 -15.61341 -14.95437 -14.62331 -14.39840 -13.92715 -13.44795 -13.12874 -12.94301 -12.73759 -12.64821 -12.49132 -12.22380 -12.06490 -12.03456 -11.30014 -11.12520 -11.10703 -10.99418 -10.83375 -10.62298 -10.56364 -10.36404 -10.22729 -9.83855 -9.58210 -9.26887 -9.04800 -8.88459 -8.57087 -8.34009 -5.97963 -3.99221 2.75672 3.32004 3.35019 3.38926 3.40676 3.50858 3.81054 4.46625 4.60388 4.68190 4.80069 4.94922 5.07822 5.18351 5.21551 5.23786 5.37498 5.48309 5.58947 5.62065 5.67879 5.78892 5.80225 5.83851 6.05947 6.21572 6.27728 6.35653 6.44595 6.64448 6.66113 6.86170 7.10042 7.10733 7.16990 7.18625 7.66892 7.79606 7.90868 8.01184 8.42871 8.64165 9.05702 9.63758 11.13550 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037351 B = 0.003345 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.457813 B = 8368.660939 C = 8826.354529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.049 3.951 5 H 0.115 0.885 6 C -0.162 4.162 7 C -0.195 4.195 8 H 0.125 0.875 9 C 0.532 3.468 10 O -0.520 6.520 11 N -0.723 5.723 12 C 0.130 3.870 13 C -0.073 4.073 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 -18.570 10.414 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.240 6.240 4 C -0.010 4.010 5 H 0.133 0.867 6 C -0.200 4.200 7 C -0.217 4.217 8 H 0.143 0.857 9 C 0.317 3.683 10 O -0.395 6.395 11 N -0.375 5.375 12 C 0.007 3.993 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.231 0.769 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.703 -18.429 10.377 21.905 hybrid contribution 1.162 0.789 -0.593 1.524 sum 6.865 -17.639 9.784 21.307 Atomic orbital electron populations 1.21706 0.93585 1.01813 1.03627 1.22533 0.95952 0.84086 0.99547 1.88204 1.16986 1.25245 1.93546 1.22517 0.83659 0.92866 1.01987 0.86745 1.23418 1.02872 1.02523 0.91151 1.22809 1.01390 1.00335 0.97119 0.85722 1.19445 0.88560 0.81582 0.78736 1.90753 1.15423 1.75590 1.57717 1.46159 1.10744 1.22725 1.57853 1.21573 0.91903 0.88836 0.96950 1.20899 0.96855 0.94468 0.95071 1.21751 0.99030 0.99737 0.97837 1.21754 0.98593 0.99830 0.98183 1.19091 0.93430 0.92170 0.95460 1.21189 0.93033 1.05340 1.35327 0.92269 1.25016 0.94795 0.98251 0.96467 1.69969 1.07006 1.32490 1.43945 0.86649 0.80016 0.82025 0.79623 1.20790 1.21344 1.19956 0.91451 0.91354 0.91890 0.93660 0.93514 0.87617 0.87310 0.76900 0.92014 0.92030 0.95221 0.91508 0.93417 0.93422 0.91498 0.95250 0.96378 0.96362 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.56 6.53 37.16 0.24 0.80 16 3 O -0.32 -4.47 8.48 -57.36 -0.49 -4.96 16 4 C 0.05 0.53 6.40 -26.73 -0.17 0.36 16 5 H 0.12 0.85 7.93 -51.93 -0.41 0.44 16 6 C -0.16 -1.57 10.19 -26.69 -0.27 -1.85 16 7 C -0.19 -2.21 6.19 -91.74 -0.57 -2.78 16 8 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.53 8.50 7.62 -10.99 -0.08 8.42 16 10 O -0.52 -10.52 14.92 -16.58 -0.25 -10.77 16 11 N -0.72 -11.06 4.96 -60.30 -0.30 -11.35 16 12 C 0.13 2.41 4.56 -4.04 -0.02 2.39 16 13 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 14 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 15 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 16 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 17 C -0.51 -13.70 7.65 -34.44 -0.26 -13.96 16 18 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.40 5.10 6.16 -40.82 -0.25 4.85 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 36 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 40 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -32.77 347.08 -7.95 -40.72 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.41 Total: 1.62 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.45 Total: -10.86 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.44 Total: -37.31 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.73 Total: -15.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.77 -7.95 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.798 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds