Wall clock time and date at job start Mon Mar 30 2020 01:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.42906 * 113.99995 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54292 * 4.41416 * 4 3 2 6 6 C 1.52999 * 117.50080 * 218.74794 * 4 3 2 7 7 C 1.52998 * 117.49944 * 150.08453 * 4 3 2 8 8 H 1.08998 * 117.49729 * 214.97959 * 7 4 3 9 9 C 1.50693 * 117.50134 * 359.97438 * 7 4 3 10 10 O 1.21284 * 119.99877 * 0.02562 * 9 7 4 11 11 N 1.34776 * 120.00169 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99967 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46988 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47116 * 299.99696 * 13 12 11 15 15 C 1.53001 * 109.47441 * 59.99718 * 13 12 11 16 16 C 1.53005 * 109.47139 * 179.97438 * 13 12 11 17 17 C 1.50707 * 109.47043 * 180.02562 * 16 13 12 18 18 H 1.07992 * 120.00034 * 359.97438 * 17 16 13 19 19 C 1.37871 * 119.99794 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47009 * 89.99929 * 21 19 17 23 23 H 1.48497 * 109.47084 * 209.99878 * 21 19 17 24 24 H 1.48494 * 109.46948 * 329.99880 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 30 30 H 1.08997 * 117.49727 * 359.97438 * 6 4 3 31 31 H 1.08996 * 117.49875 * 145.02033 * 6 4 3 32 32 H 0.96994 * 119.99826 * 359.97438 * 11 9 7 33 33 H 1.08998 * 109.47254 * 299.99470 * 12 11 9 34 34 H 1.08996 * 109.47487 * 60.00091 * 12 11 9 35 35 H 1.08999 * 109.46914 * 60.00112 * 14 13 12 36 36 H 1.09000 * 109.47155 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.47357 * 299.99795 * 14 13 12 38 38 H 1.09007 * 109.46637 * 59.99573 * 15 13 12 39 39 H 1.08994 * 109.47421 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47140 * 300.00225 * 15 13 12 41 41 H 1.09001 * 109.46676 * 300.00039 * 16 13 12 42 42 H 1.09001 * 109.46802 * 60.00126 * 16 13 12 43 43 H 0.97001 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5197 -0.0747 6 6 4.0513 2.5711 0.8501 7 6 4.0426 2.6884 -0.6762 8 1 4.9913 2.5563 -1.1964 9 6 3.0967 3.6864 -1.2929 10 8 1.8995 3.4996 -1.2406 11 7 3.5812 4.7864 -1.9025 12 6 2.6616 5.7569 -2.5015 13 6 3.4630 6.9028 -3.1223 14 6 4.2941 7.5904 -2.0373 15 6 4.3935 6.3479 -4.2026 16 6 2.5026 7.9161 -3.7485 17 6 3.2920 9.0446 -4.3606 18 1 4.3706 9.0398 -4.3079 19 6 2.6370 10.0836 -4.9870 20 7 1.3234 10.0896 -5.0508 21 14 3.6154 11.4827 -5.7450 22 1 3.9303 11.1570 -7.1593 23 1 2.8150 12.7323 -5.6913 24 1 4.8784 11.6708 -4.9872 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.3728 3.2163 1.4082 31 1 5.0056 2.3619 1.3332 32 1 4.5386 4.9360 -1.9439 33 1 2.0692 5.2670 -3.2743 34 1 1.9990 6.1526 -1.7319 35 1 4.9783 6.8683 -1.5916 36 1 4.8653 8.4065 -2.4796 37 1 3.6312 7.9858 -1.2677 38 1 3.8013 5.8580 -4.9756 39 1 4.9641 7.1643 -4.6452 40 1 5.0777 5.6258 -3.7569 41 1 1.9108 7.4259 -4.5216 42 1 1.8394 8.3115 -2.9792 43 1 0.8626 10.8204 -5.4918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359757885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:04 Heat of formation + Delta-G solvation = -94.219978 kcal Electronic energy + Delta-G solvation = -20869.403709 eV Core-core repulsion = 17721.302866 eV Total energy + Delta-G solvation = -3148.100843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05945 -39.34236 -38.33329 -36.00455 -35.17910 -33.85628 -31.63922 -29.17973 -28.01705 -27.96201 -25.52948 -23.96839 -23.73040 -22.98720 -21.12282 -19.79484 -18.64802 -18.37328 -17.10016 -16.79459 -16.47344 -16.40366 -16.26159 -15.68557 -15.16393 -14.96257 -14.63210 -14.38612 -13.95762 -13.93369 -13.70232 -13.54198 -13.26053 -12.99731 -12.86681 -12.72229 -12.58798 -12.34135 -12.22842 -12.08175 -11.98245 -11.84799 -11.54129 -11.37747 -11.09946 -10.88933 -10.66957 -10.52042 -10.01479 -9.97263 -8.14279 -6.22650 1.42310 1.43151 1.53587 1.62177 2.25119 2.45104 2.65866 2.93699 3.20003 3.81761 3.86995 3.95656 4.01990 4.07982 4.21163 4.21198 4.23248 4.44294 4.51424 4.52600 4.69572 4.71909 4.77872 4.86647 4.90577 4.96688 5.02994 5.07809 5.11236 5.12150 5.26762 5.41445 5.49169 5.49516 5.53490 5.59615 5.79730 5.89292 6.29651 6.44158 6.70878 6.92731 7.41878 7.45386 8.98494 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037351 B = 0.003345 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.457813 B = 8368.660939 C = 8826.354529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.367 6.367 4 C 0.040 3.960 5 H 0.154 0.846 6 C -0.147 4.147 7 C -0.202 4.202 8 H 0.164 0.836 9 C 0.524 3.476 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.144 3.856 13 C -0.064 4.064 14 C -0.120 4.120 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.940 5.940 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.258 1.258 25 H 0.040 0.960 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.413 0.587 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.072 0.928 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -20.067 11.215 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.286 6.286 4 C -0.019 4.019 5 H 0.171 0.829 6 C -0.185 4.185 7 C -0.223 4.223 8 H 0.182 0.818 9 C 0.312 3.688 10 O -0.450 6.450 11 N -0.363 5.363 12 C 0.020 3.980 13 C -0.065 4.065 14 C -0.177 4.177 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.581 5.581 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.182 1.182 25 H 0.059 0.941 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.002 0.998 42 H 0.001 0.999 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.512 -19.937 11.187 24.761 hybrid contribution -0.084 1.206 -0.808 1.454 sum 9.428 -18.731 10.379 23.398 Atomic orbital electron populations 1.21748 0.94146 1.03081 1.01827 1.22717 0.95672 0.83047 1.01152 1.88160 1.19196 1.27435 1.93793 1.22997 0.82732 0.94357 1.01823 0.82861 1.23514 1.04017 1.01227 0.89725 1.22877 1.01736 0.99406 0.98305 0.81829 1.20379 0.88775 0.81878 0.77792 1.90738 1.18097 1.76691 1.59496 1.45954 1.10946 1.21999 1.57400 1.21127 0.92032 0.89151 0.95727 1.20705 0.96198 0.93439 0.96123 1.21680 0.98965 1.00298 0.96793 1.21686 0.98439 1.00309 0.97326 1.18976 0.93788 0.93299 0.93722 1.21595 0.93826 1.05363 1.34360 0.90762 1.25987 0.95734 1.01363 0.97271 1.70135 1.09044 1.33565 1.45392 0.85506 0.78827 0.78181 0.78902 1.20088 1.21584 1.18196 0.94059 0.88541 0.92831 0.91170 0.92517 0.90215 0.83153 0.74945 0.94209 0.94360 0.91003 0.92441 0.94708 0.94639 0.92409 0.90966 0.99818 0.99856 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.05 0.94 6.53 71.98 0.47 1.41 16 3 O -0.37 -9.96 8.48 -127.82 -1.08 -11.04 16 4 C 0.04 0.73 6.40 30.59 0.20 0.93 16 5 H 0.15 1.56 7.93 -2.38 -0.02 1.54 16 6 C -0.15 -2.39 10.19 30.62 0.31 -2.07 16 7 C -0.20 -3.94 6.19 -11.52 -0.07 -4.02 16 8 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.52 16.34 7.62 87.65 0.67 17.00 16 10 O -0.57 -23.91 14.92 18.12 0.27 -23.64 16 11 N -0.71 -20.76 4.96 -463.08 -2.30 -23.06 16 12 C 0.14 5.49 4.56 86.38 0.39 5.89 16 13 C -0.06 -2.51 0.54 -52.18 -0.03 -2.53 16 14 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 15 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -27.93 7.65 25.60 0.20 -27.73 16 18 H 0.07 3.75 5.68 -2.91 -0.02 3.74 16 19 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 20 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.41 9.15 6.16 -92.71 -0.57 8.58 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.85 6.86 -2.39 -0.02 1.84 16 36 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 40 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -76.66 347.08 4.23 -72.43 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.41 Total: 15.31 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.62 Total: -18.12 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.01 Total: -80.92 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.81 Total: -34.68 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.66 4.23 -72.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.789 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds