Wall clock time and date at job start Mon Mar 30 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47171 * 2 1 4 4 C 1.42904 * 113.99768 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46908 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46977 * 185.12014 * 5 4 3 7 7 C 1.52994 * 115.54870 * 294.62459 * 6 5 4 8 8 N 1.46501 * 109.47341 * 279.23758 * 7 6 5 9 9 C 1.34771 * 120.00275 * 178.63472 * 8 7 6 10 10 O 1.21280 * 120.00210 * 359.72395 * 9 8 7 11 11 C 1.50704 * 120.00028 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47019 * 179.72467 * 11 9 8 13 13 C 1.50707 * 109.47093 * 179.97438 * 12 11 9 14 14 H 1.07992 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47046 * 90.00296 * 17 15 13 19 19 H 1.48499 * 109.47120 * 210.00147 * 17 15 13 20 20 H 1.48495 * 109.47266 * 330.00020 * 17 15 13 21 21 C 1.53003 * 117.51467 * 80.32684 * 6 5 4 22 22 C 1.52996 * 117.49809 * 148.95386 * 6 5 4 23 23 H 1.09004 * 109.46854 * 59.99565 * 1 2 3 24 24 H 1.08996 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47198 * 300.00596 * 1 2 3 26 26 H 1.08998 * 109.47029 * 239.99882 * 2 1 3 27 27 H 1.08998 * 109.47226 * 119.99850 * 2 1 3 28 28 H 1.09005 * 109.47291 * 59.99716 * 4 3 2 29 29 H 1.09004 * 109.47062 * 299.99637 * 4 3 2 30 30 H 1.09003 * 109.47316 * 65.12157 * 5 4 3 31 31 H 1.09001 * 109.46848 * 305.11688 * 5 4 3 32 32 H 1.09003 * 109.46960 * 159.24187 * 7 6 5 33 33 H 1.09003 * 109.47405 * 39.23937 * 7 6 5 34 34 H 0.97006 * 119.99684 * 358.63772 * 8 7 6 35 35 H 1.08995 * 109.46761 * 299.72075 * 11 9 8 36 36 H 1.08996 * 109.47245 * 59.72053 * 11 9 8 37 37 H 1.09001 * 109.47312 * 299.99776 * 12 11 9 38 38 H 1.09003 * 109.47473 * 60.00083 * 12 11 9 39 39 H 0.97001 * 119.99900 * 179.97438 * 16 15 13 40 40 H 1.09004 * 117.49393 * 214.96807 * 21 6 5 41 41 H 1.08994 * 117.50245 * 359.97438 * 21 6 5 42 42 H 1.09008 * 117.50102 * 359.97438 * 22 6 5 43 43 H 1.08999 * 117.50203 * 144.99998 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3452 3.0605 -0.1305 7 6 6.1538 2.5115 1.0465 8 7 6.1769 3.5008 2.1268 9 6 6.8121 3.2220 3.2824 10 8 7.3603 2.1503 3.4298 11 6 6.8353 4.2394 4.3939 12 6 7.6094 3.6743 5.5864 13 6 7.6332 4.6920 6.6977 14 1 7.1446 5.6461 6.5667 15 6 8.2777 4.4044 7.8821 16 7 8.8723 3.2422 8.0419 17 14 8.3065 5.6656 9.2598 18 1 7.1280 5.4637 10.1404 19 1 9.5510 5.5032 10.0536 20 1 8.2636 7.0323 8.6808 21 6 5.9490 2.9201 -1.5293 22 6 5.8959 4.2915 -0.8531 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8334 0.9766 -0.8908 29 1 3.8341 0.9764 0.8892 30 1 3.5018 3.4012 0.9311 31 1 3.3476 3.4415 -0.8418 32 1 7.1735 2.3045 0.7216 33 1 5.6932 1.5914 1.4062 34 1 5.7350 4.3564 2.0104 35 1 7.3219 5.1495 4.0432 36 1 5.8141 4.4678 4.6988 37 1 7.1229 2.7642 5.9371 38 1 8.6307 3.4460 5.2815 39 1 9.3261 3.0401 8.8751 40 1 6.9226 2.4367 -1.6109 41 1 5.2638 2.7403 -2.3576 42 1 5.1756 5.0142 -1.2367 43 1 6.8344 4.7103 -0.4900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360362030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:09 Heat of formation + Delta-G solvation = -88.176951 kcal Electronic energy + Delta-G solvation = -20202.272593 eV Core-core repulsion = 17054.433795 eV Total energy + Delta-G solvation = -3147.838798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67233 -38.53620 -37.71629 -33.74130 -33.40576 -32.32258 -30.97024 -30.04799 -27.29445 -25.10765 -23.75215 -23.05943 -22.55288 -21.47792 -19.73486 -19.02745 -17.01085 -16.84720 -16.51621 -15.97134 -15.55919 -15.31690 -14.82425 -14.63948 -14.41341 -14.37155 -13.90806 -13.06638 -12.96294 -12.77575 -12.48864 -12.20686 -12.14877 -11.93440 -11.76186 -11.51841 -11.38037 -11.18263 -11.12074 -10.91079 -10.59123 -10.46003 -10.16769 -9.92660 -9.80916 -9.63541 -9.14058 -8.95963 -8.72035 -8.29778 -5.94054 -3.98313 3.14354 3.30471 3.34801 3.40517 3.42988 3.45817 3.86118 4.42241 4.44727 4.49541 4.68446 4.68957 4.76389 4.89535 5.02529 5.08295 5.19243 5.24274 5.37675 5.39632 5.40814 5.47682 5.55323 5.62020 5.65031 5.76529 5.82891 5.86296 5.88329 5.92717 6.01597 6.26845 6.28607 6.76886 6.93343 6.97192 7.76852 7.89263 7.95136 8.09800 8.41337 8.82923 9.10540 9.65081 11.16943 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003160 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.720733 B = 8859.379669 C = 9666.357404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.063 3.937 5 C -0.077 4.077 6 C -0.141 4.141 7 C 0.156 3.844 8 N -0.740 5.740 9 C 0.509 3.491 10 O -0.537 6.537 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.165 4.165 22 C -0.164 4.164 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -1.855 -21.483 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.312 6.312 4 C -0.013 4.013 5 C -0.115 4.115 6 C -0.142 4.142 7 C 0.032 3.968 8 N -0.395 5.395 9 C 0.297 3.703 10 O -0.413 6.413 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.202 4.202 22 C -0.201 4.201 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.531 -2.607 -21.231 24.791 hybrid contribution 0.023 0.755 0.689 1.023 sum -12.509 -1.852 -20.542 24.122 Atomic orbital electron populations 1.21745 0.93784 1.02217 1.03105 1.22450 0.95544 0.83832 1.00144 1.87849 1.21354 1.26476 1.95485 1.22480 0.80868 0.97432 1.00525 1.20962 0.91642 0.95305 1.03549 1.21610 0.94485 1.04302 0.93761 1.20725 0.98793 0.91983 0.85327 1.46184 1.58141 1.19627 1.15510 1.21563 0.76716 0.89203 0.82800 1.90665 1.44253 1.25517 1.80828 1.21856 1.03035 0.97009 0.95074 1.18896 0.95449 0.96182 0.89540 1.21232 1.34610 1.01410 0.99209 0.92609 1.25031 0.95459 0.95381 0.98568 1.70004 1.35356 1.21707 1.25827 0.86588 0.77430 0.81720 0.82188 1.20678 1.21240 1.19896 1.23057 1.02518 1.00377 0.94258 1.23041 1.03120 0.90897 1.03064 0.91972 0.91136 0.91760 0.93538 0.93259 0.93260 0.92910 0.90379 0.90832 0.91757 0.91395 0.76843 0.90298 0.90277 0.95858 0.95854 0.92977 0.88382 0.88471 0.88411 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.33 10.34 -35.23 -0.36 -4.70 16 4 C 0.06 0.63 5.70 37.16 0.21 0.84 16 5 C -0.08 -0.71 5.47 -26.73 -0.15 -0.86 16 6 C -0.14 -1.30 1.52 -154.51 -0.24 -1.53 16 7 C 0.16 1.95 5.54 -4.04 -0.02 1.93 16 8 N -0.74 -10.51 5.51 -60.29 -0.33 -10.84 16 9 C 0.51 9.94 7.83 -10.99 -0.09 9.85 16 10 O -0.54 -12.88 15.98 5.56 0.09 -12.79 16 11 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 12 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 13 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.16 -1.28 9.90 -26.73 -0.26 -1.55 16 22 C -0.16 -1.32 9.84 -26.73 -0.26 -1.58 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.57 6.96 -51.93 -0.36 0.21 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 33 H 0.07 0.93 6.72 -51.93 -0.35 0.58 16 34 H 0.40 4.58 8.43 -40.82 -0.34 4.24 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -34.27 359.37 -8.10 -42.37 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.76 Total: -0.65 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.86 Total: -8.66 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.40 Total: -37.83 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.28 Total: -17.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.27 -8.10 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360362030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.805 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds