Wall clock time and date at job start Mon Mar 30 2020 01:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47171 * 2 1 4 4 C 1.42904 * 113.99768 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46908 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46977 * 185.12014 * 5 4 3 7 7 C 1.52994 * 115.54870 * 294.62459 * 6 5 4 8 8 N 1.46501 * 109.47341 * 279.23758 * 7 6 5 9 9 C 1.34771 * 120.00275 * 178.63472 * 8 7 6 10 10 O 1.21280 * 120.00210 * 359.72395 * 9 8 7 11 11 C 1.50704 * 120.00028 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47019 * 179.72467 * 11 9 8 13 13 C 1.50707 * 109.47093 * 179.97438 * 12 11 9 14 14 H 1.07992 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00087 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47046 * 90.00296 * 17 15 13 19 19 H 1.48499 * 109.47120 * 210.00147 * 17 15 13 20 20 H 1.48495 * 109.47266 * 330.00020 * 17 15 13 21 21 C 1.53003 * 117.51467 * 80.32684 * 6 5 4 22 22 C 1.52996 * 117.49809 * 148.95386 * 6 5 4 23 23 H 1.09004 * 109.46854 * 59.99565 * 1 2 3 24 24 H 1.08996 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47198 * 300.00596 * 1 2 3 26 26 H 1.08998 * 109.47029 * 239.99882 * 2 1 3 27 27 H 1.08998 * 109.47226 * 119.99850 * 2 1 3 28 28 H 1.09005 * 109.47291 * 59.99716 * 4 3 2 29 29 H 1.09004 * 109.47062 * 299.99637 * 4 3 2 30 30 H 1.09003 * 109.47316 * 65.12157 * 5 4 3 31 31 H 1.09001 * 109.46848 * 305.11688 * 5 4 3 32 32 H 1.09003 * 109.46960 * 159.24187 * 7 6 5 33 33 H 1.09003 * 109.47405 * 39.23937 * 7 6 5 34 34 H 0.97006 * 119.99684 * 358.63772 * 8 7 6 35 35 H 1.08995 * 109.46761 * 299.72075 * 11 9 8 36 36 H 1.08996 * 109.47245 * 59.72053 * 11 9 8 37 37 H 1.09001 * 109.47312 * 299.99776 * 12 11 9 38 38 H 1.09003 * 109.47473 * 60.00083 * 12 11 9 39 39 H 0.97001 * 119.99900 * 179.97438 * 16 15 13 40 40 H 1.09004 * 117.49393 * 214.96807 * 21 6 5 41 41 H 1.08994 * 117.50245 * 359.97438 * 21 6 5 42 42 H 1.09008 * 117.50102 * 359.97438 * 22 6 5 43 43 H 1.08999 * 117.50203 * 144.99998 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3452 3.0605 -0.1305 7 6 6.1538 2.5115 1.0465 8 7 6.1769 3.5008 2.1268 9 6 6.8121 3.2220 3.2824 10 8 7.3603 2.1503 3.4298 11 6 6.8353 4.2394 4.3939 12 6 7.6094 3.6743 5.5864 13 6 7.6332 4.6920 6.6977 14 1 7.1446 5.6461 6.5667 15 6 8.2777 4.4044 7.8821 16 7 8.8723 3.2422 8.0419 17 14 8.3065 5.6656 9.2598 18 1 7.1280 5.4637 10.1404 19 1 9.5510 5.5032 10.0536 20 1 8.2636 7.0323 8.6808 21 6 5.9490 2.9201 -1.5293 22 6 5.8959 4.2915 -0.8531 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8334 0.9766 -0.8908 29 1 3.8341 0.9764 0.8892 30 1 3.5018 3.4012 0.9311 31 1 3.3476 3.4415 -0.8418 32 1 7.1735 2.3045 0.7216 33 1 5.6932 1.5914 1.4062 34 1 5.7350 4.3564 2.0104 35 1 7.3219 5.1495 4.0432 36 1 5.8141 4.4678 4.6988 37 1 7.1229 2.7642 5.9371 38 1 8.6307 3.4460 5.2815 39 1 9.3261 3.0401 8.8751 40 1 6.9226 2.4367 -1.6109 41 1 5.2638 2.7403 -2.3576 42 1 5.1756 5.0142 -1.2367 43 1 6.8344 4.7103 -0.4900 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360362030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:08 Heat of formation + Delta-G solvation = -111.149253 kcal Electronic energy + Delta-G solvation = -20203.268746 eV Core-core repulsion = 17054.433795 eV Total energy + Delta-G solvation = -3148.834951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90206 -39.62634 -38.54767 -35.58836 -35.04810 -32.99378 -32.97371 -30.75988 -28.78904 -26.87050 -24.50467 -23.76973 -23.57551 -23.01803 -21.20163 -19.99727 -18.78125 -17.74480 -17.52079 -17.22823 -16.96789 -16.64405 -16.40379 -15.90927 -15.45836 -15.37682 -14.76798 -14.52420 -14.39447 -14.17076 -13.52038 -13.35364 -13.23394 -13.16363 -12.84365 -12.80295 -12.49522 -12.37315 -12.27649 -12.06831 -11.92214 -11.91349 -11.63739 -11.30959 -11.21522 -11.00378 -10.58349 -10.56620 -10.55465 -10.04193 -8.18031 -6.32173 1.42057 1.44999 1.55933 1.72141 2.16039 2.43513 2.61582 2.98919 3.14864 3.63542 3.68575 3.92742 4.00932 4.09121 4.12759 4.23832 4.26325 4.44115 4.44800 4.48850 4.50992 4.56014 4.66247 4.75491 4.80656 4.83565 5.00017 5.01361 5.06338 5.09091 5.13704 5.19254 5.26061 5.29015 5.45738 5.52651 5.63340 5.85579 6.17781 6.23983 6.63018 6.86424 7.35413 7.38418 8.94752 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003160 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.720733 B = 8859.379669 C = 9666.357404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.410 6.410 4 C 0.062 3.938 5 C -0.070 4.070 6 C -0.146 4.146 7 C 0.155 3.845 8 N -0.714 5.714 9 C 0.510 3.490 10 O -0.592 6.592 11 C -0.119 4.119 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.975 3.025 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.154 4.154 22 C -0.155 4.155 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.415 0.585 35 H 0.105 0.895 36 H 0.103 0.897 37 H -0.019 1.019 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.305 0.351 -22.851 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.330 6.330 4 C -0.014 4.014 5 C -0.108 4.108 6 C -0.147 4.147 7 C 0.031 3.969 8 N -0.367 5.367 9 C 0.298 3.702 10 O -0.472 6.472 11 C -0.159 4.159 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.191 4.191 22 C -0.192 4.192 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.252 0.748 35 H 0.123 0.877 36 H 0.121 0.879 37 H -0.001 1.001 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.953 -0.355 -22.653 26.607 hybrid contribution 0.440 0.005 1.045 1.134 sum -13.513 -0.350 -21.608 25.487 Atomic orbital electron populations 1.21760 0.92711 1.03358 1.02767 1.22644 0.96515 0.83071 1.00562 1.87824 1.21814 1.27804 1.95563 1.22516 0.80571 0.98026 1.00310 1.20905 0.91475 0.94792 1.03599 1.21376 0.93991 1.06100 0.93202 1.20797 0.98966 0.91289 0.85809 1.45898 1.56023 1.20588 1.14174 1.21342 0.76776 0.88089 0.83979 1.90650 1.47007 1.27528 1.82008 1.21631 1.03467 0.97665 0.93131 1.18688 0.93697 0.94892 0.92291 1.21722 1.34483 1.02220 0.99643 0.90578 1.26157 0.94811 0.97662 1.01916 1.70185 1.36490 1.24349 1.26827 0.85306 0.77514 0.79197 0.78143 1.19713 1.21155 1.17851 1.23155 1.02628 1.00004 0.93356 1.23125 1.03092 0.90958 1.02017 0.91731 0.89301 0.92615 0.92243 0.93727 0.92019 0.94596 0.91420 0.89396 0.92554 0.92789 0.74784 0.87705 0.87893 1.00069 0.99945 0.92859 0.88458 0.86761 0.86610 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.41 -8.71 10.34 -148.98 -1.54 -10.25 16 4 C 0.06 1.18 5.70 71.98 0.41 1.59 16 5 C -0.07 -1.17 5.47 30.60 0.17 -1.01 16 6 C -0.15 -2.41 1.52 -52.18 -0.08 -2.49 16 7 C 0.15 3.83 5.54 86.38 0.48 4.30 16 8 N -0.71 -19.64 5.51 -463.07 -2.55 -22.20 16 9 C 0.51 20.15 7.83 87.66 0.69 20.84 16 10 O -0.59 -29.75 15.98 -3.03 -0.05 -29.80 16 11 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 12 C 0.04 2.38 4.26 29.85 0.13 2.51 16 13 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 14 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 15 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 16 N -0.94 -60.28 13.29 21.45 0.28 -59.99 16 17 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 21 C -0.15 -1.99 9.90 30.59 0.30 -1.69 16 22 C -0.15 -2.02 9.84 30.59 0.30 -1.72 16 23 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 29 H 0.04 0.79 6.96 -2.38 -0.02 0.77 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 32 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 33 H 0.05 1.51 6.72 -2.39 -0.02 1.50 16 34 H 0.42 8.64 8.43 -92.70 -0.78 7.86 16 35 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 37 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 38 H -0.02 -1.15 8.10 -2.39 -0.02 -1.16 16 39 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.10 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -77.50 359.37 2.83 -74.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.18 Total: 14.27 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.48 Total: -13.45 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.27 Total: -82.19 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.59 Total: -40.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.50 2.83 -74.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360362030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.476 kcal (2) G-P(sol) polarization free energy of solvation -77.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds