Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00325 * 2 1 4 4 C 1.53004 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46617 * 304.99562 * 4 3 2 6 6 C 1.52999 * 109.47304 * 64.99358 * 4 3 2 7 7 C 1.52995 * 109.47008 * 184.99469 * 4 3 2 8 8 H 1.08997 * 109.47811 * 299.99867 * 7 4 3 9 9 C 1.53009 * 109.47194 * 59.99953 * 7 4 3 10 10 C 1.50706 * 109.47088 * 179.97438 * 7 4 3 11 11 O 1.21281 * 119.99392 * 323.07484 * 10 7 4 12 12 N 1.34767 * 120.00114 * 143.07622 * 10 7 4 13 13 C 1.46503 * 120.00233 * 185.05108 * 12 10 7 14 14 C 1.53000 * 109.47418 * 184.20383 * 13 12 10 15 15 C 1.50697 * 115.54812 * 295.65834 * 14 13 12 16 16 H 1.08002 * 120.00539 * 86.61002 * 15 14 13 17 17 C 1.37883 * 119.99882 * 266.33374 * 15 14 13 18 18 N 1.31512 * 119.99684 * 356.87366 * 17 15 14 19 19 Si 1.86798 * 120.00103 * 176.86805 * 17 15 14 20 20 H 1.48503 * 109.47053 * 60.00295 * 19 17 15 21 21 H 1.48501 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47268 * 300.00232 * 19 17 15 23 23 C 1.52999 * 117.49838 * 81.32194 * 14 13 12 24 24 C 1.52996 * 117.49952 * 149.98586 * 14 13 12 25 25 H 1.09000 * 109.47466 * 300.00814 * 1 2 3 26 26 H 1.09010 * 109.46558 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99552 * 3 2 1 29 29 H 1.09001 * 109.46440 * 299.99304 * 3 2 1 30 30 H 1.09000 * 109.46994 * 300.00259 * 6 4 3 31 31 H 1.09006 * 109.46825 * 59.99803 * 6 4 3 32 32 H 1.08992 * 109.46959 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47233 * 177.20318 * 9 7 4 34 34 H 1.08991 * 109.47064 * 297.20410 * 9 7 4 35 35 H 1.08996 * 109.46850 * 57.20402 * 9 7 4 36 36 H 0.96999 * 120.00073 * 5.05199 * 12 10 7 37 37 H 1.08992 * 109.46965 * 64.20132 * 13 12 10 38 38 H 1.08999 * 109.46780 * 304.20105 * 13 12 10 39 39 H 0.97003 * 119.99926 * 185.01268 * 18 17 15 40 40 H 1.08998 * 117.50018 * 215.00090 * 23 14 13 41 41 H 1.08997 * 117.50113 * 0.02968 * 23 14 13 42 42 H 1.08997 * 117.50178 * 359.97438 * 24 14 13 43 43 H 1.09000 * 117.49566 * 144.97577 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8428 6 6 3.9964 0.5363 -1.3063 7 6 4.1573 2.5769 0.1262 8 1 3.8421 3.1930 -0.7158 9 6 3.6965 3.2253 1.4333 10 6 5.6597 2.4578 0.1275 11 8 6.1932 1.5215 0.6838 12 7 6.4102 3.3918 -0.4895 13 6 7.8619 3.2196 -0.5843 14 6 8.4814 4.4595 -1.2322 15 6 8.0771 4.7169 -2.6610 16 1 7.1801 5.2788 -2.8756 17 6 8.8555 4.2400 -3.6943 18 7 9.9823 3.6139 -3.4338 19 14 8.3094 4.4829 -5.4641 20 1 8.1856 5.9351 -5.7490 21 1 9.3140 3.8835 -6.3788 22 1 6.9949 3.8239 -5.6714 23 6 8.7270 5.6761 -0.3375 24 6 9.9080 4.8321 -0.8236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.5533 -0.4556 -1.3958 31 1 3.6810 1.1523 -2.1484 32 1 5.0828 0.4498 -1.3056 33 1 4.1783 4.1964 1.5468 34 1 2.6147 3.3567 1.4120 35 1 3.9682 2.5846 2.2722 36 1 5.9891 4.1781 -0.8707 37 1 8.0848 2.3425 -1.1918 38 1 8.2778 3.0853 0.4142 39 1 10.5655 3.3427 -4.1600 40 1 8.5963 6.6626 -0.7822 41 1 8.4478 5.5929 0.7128 42 1 10.4051 4.1941 -0.0929 43 1 10.5542 5.2630 -1.5884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360470157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -81.254272 kcal Electronic energy + Delta-G solvation = -21254.645203 eV Core-core repulsion = 18107.106595 eV Total energy + Delta-G solvation = -3147.538608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68986 -38.10265 -36.76840 -35.14168 -33.30069 -31.92577 -30.54756 -27.60129 -26.61345 -25.55299 -25.19012 -23.70616 -21.18560 -20.64754 -19.59451 -18.95385 -17.18615 -16.31946 -16.17128 -15.89728 -15.09389 -14.88363 -14.67150 -14.59910 -13.96874 -13.80346 -13.40554 -13.15671 -12.84426 -12.57041 -12.29235 -12.11220 -11.76678 -11.66592 -11.60308 -11.44129 -10.97734 -10.96730 -10.81342 -10.76130 -10.56587 -10.50383 -10.19778 -9.76125 -9.56455 -9.18921 -9.05816 -8.47088 -8.25014 -8.09433 -6.07370 -4.18609 3.15860 3.25698 3.31927 3.32938 3.56473 3.99502 4.34108 4.73720 4.87090 4.95197 5.11806 5.13965 5.17187 5.24955 5.32675 5.35250 5.39171 5.46374 5.59799 5.65812 5.77450 5.83533 5.90604 6.05302 6.14229 6.20962 6.36017 6.40712 6.48155 6.51235 6.56572 6.72578 6.85854 7.05060 7.15160 7.28569 7.39224 7.60896 7.78930 8.29776 8.33501 8.82460 8.88329 9.48527 10.98539 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.004615 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.435655 B = 6065.765670 C = 6867.723454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.065 3.935 4 C -0.071 4.071 5 H 0.090 0.910 6 C -0.147 4.147 7 C -0.105 4.105 8 H 0.089 0.911 9 C -0.143 4.143 10 C 0.513 3.487 11 O -0.555 6.555 12 N -0.704 5.704 13 C 0.162 3.838 14 C 0.020 3.980 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.213 4.213 24 C -0.135 4.135 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 -1.239 6.035 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.012 4.012 4 C -0.090 4.090 5 H 0.108 0.892 6 C -0.204 4.204 7 C -0.127 4.127 8 H 0.107 0.893 9 C -0.201 4.201 10 C 0.298 3.702 11 O -0.435 6.435 12 N -0.352 5.352 13 C 0.039 3.961 14 C 0.019 3.981 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.251 4.251 24 C -0.173 4.173 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.636 -2.235 6.306 16.093 hybrid contribution -0.552 0.801 -1.293 1.618 sum -15.188 -1.433 5.013 16.058 Atomic orbital electron populations 1.22717 0.81426 1.02561 0.99790 1.87891 1.19261 1.28170 1.95364 1.22697 0.93867 0.84458 1.00165 1.20908 0.91979 0.95302 1.00846 0.89184 1.21808 1.02134 1.00789 0.95686 1.21271 0.93326 0.97789 1.00326 0.89297 1.21789 1.01143 1.00933 0.96184 1.20297 0.88682 0.82548 0.78656 1.90649 1.74320 1.33238 1.45244 1.46037 1.09103 1.23561 1.56484 1.21024 0.77703 0.99582 0.97774 1.19045 0.96000 0.89645 0.93420 1.20297 1.09846 1.35283 0.88249 0.92324 1.24986 0.95002 0.94193 0.98906 1.69992 1.10764 1.38215 1.32175 0.86693 0.78572 0.78336 0.84586 1.20289 1.21251 1.20139 1.23067 1.07286 0.97154 0.97547 1.22427 0.91829 1.01988 1.01049 0.94264 0.94207 0.89802 0.92930 0.93267 0.91990 0.92994 0.91833 0.91939 0.91766 0.91733 0.76563 0.91856 0.94150 0.92825 0.90442 0.91913 0.91988 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.73 10.24 -35.23 -0.36 -5.09 16 3 C 0.06 0.72 5.10 37.16 0.19 0.91 16 4 C -0.07 -0.97 1.91 -90.62 -0.17 -1.14 16 5 H 0.09 1.38 7.86 -51.93 -0.41 0.97 16 6 C -0.15 -2.17 8.83 37.16 0.33 -1.84 16 7 C -0.11 -1.42 2.31 -91.77 -0.21 -1.63 16 8 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 9 C -0.14 -1.60 8.75 37.16 0.33 -1.27 16 10 C 0.51 9.27 5.72 -10.99 -0.06 9.21 16 11 O -0.56 -12.04 15.86 5.56 0.09 -11.96 16 12 N -0.70 -13.34 5.47 -60.30 -0.33 -13.67 16 13 C 0.16 3.64 5.52 -4.04 -0.02 3.61 16 14 C 0.02 0.46 1.63 -155.66 -0.25 0.21 16 15 C -0.50 -12.71 8.62 -34.44 -0.30 -13.01 16 16 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 17 C 0.07 1.92 5.41 -17.82 -0.10 1.83 16 18 N -0.88 -24.10 11.95 55.43 0.66 -23.44 16 19 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C -0.21 -4.47 9.96 -26.69 -0.27 -4.74 16 24 C -0.13 -3.12 8.86 -26.69 -0.24 -3.36 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.30 8.14 -51.92 -0.42 -0.13 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.51 6.23 -51.93 -0.32 0.18 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.10 6.89 -51.93 -0.36 0.75 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 6.47 -51.93 -0.34 0.23 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 6.94 8.29 -40.82 -0.34 6.61 16 37 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 2.30 7.67 -51.93 -0.40 1.90 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -29.50 351.12 -6.94 -36.43 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.61 Total: 6.89 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 0.34 Total: -9.85 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.33 Total: -37.11 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.27 Total: -17.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.50 -6.94 -36.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360470157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.820 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds