Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00325 * 2 1 4 4 C 1.53004 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46617 * 304.99562 * 4 3 2 6 6 C 1.52999 * 109.47304 * 64.99358 * 4 3 2 7 7 C 1.52995 * 109.47008 * 184.99469 * 4 3 2 8 8 H 1.08997 * 109.47811 * 299.99867 * 7 4 3 9 9 C 1.53009 * 109.47194 * 59.99953 * 7 4 3 10 10 C 1.50706 * 109.47088 * 179.97438 * 7 4 3 11 11 O 1.21281 * 119.99392 * 323.07484 * 10 7 4 12 12 N 1.34767 * 120.00114 * 143.07622 * 10 7 4 13 13 C 1.46503 * 120.00233 * 185.05108 * 12 10 7 14 14 C 1.53000 * 109.47418 * 184.20383 * 13 12 10 15 15 C 1.50697 * 115.54812 * 295.65834 * 14 13 12 16 16 H 1.08002 * 120.00539 * 86.61002 * 15 14 13 17 17 C 1.37883 * 119.99882 * 266.33374 * 15 14 13 18 18 N 1.31512 * 119.99684 * 356.87366 * 17 15 14 19 19 Si 1.86798 * 120.00103 * 176.86805 * 17 15 14 20 20 H 1.48503 * 109.47053 * 60.00295 * 19 17 15 21 21 H 1.48501 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47268 * 300.00232 * 19 17 15 23 23 C 1.52999 * 117.49838 * 81.32194 * 14 13 12 24 24 C 1.52996 * 117.49952 * 149.98586 * 14 13 12 25 25 H 1.09000 * 109.47466 * 300.00814 * 1 2 3 26 26 H 1.09010 * 109.46558 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99552 * 3 2 1 29 29 H 1.09001 * 109.46440 * 299.99304 * 3 2 1 30 30 H 1.09000 * 109.46994 * 300.00259 * 6 4 3 31 31 H 1.09006 * 109.46825 * 59.99803 * 6 4 3 32 32 H 1.08992 * 109.46959 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47233 * 177.20318 * 9 7 4 34 34 H 1.08991 * 109.47064 * 297.20410 * 9 7 4 35 35 H 1.08996 * 109.46850 * 57.20402 * 9 7 4 36 36 H 0.96999 * 120.00073 * 5.05199 * 12 10 7 37 37 H 1.08992 * 109.46965 * 64.20132 * 13 12 10 38 38 H 1.08999 * 109.46780 * 304.20105 * 13 12 10 39 39 H 0.97003 * 119.99926 * 185.01268 * 18 17 15 40 40 H 1.08998 * 117.50018 * 215.00090 * 23 14 13 41 41 H 1.08997 * 117.50113 * 0.02968 * 23 14 13 42 42 H 1.08997 * 117.50178 * 359.97438 * 24 14 13 43 43 H 1.09000 * 117.49566 * 144.97577 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8428 6 6 3.9964 0.5363 -1.3063 7 6 4.1573 2.5769 0.1262 8 1 3.8421 3.1930 -0.7158 9 6 3.6965 3.2253 1.4333 10 6 5.6597 2.4578 0.1275 11 8 6.1932 1.5215 0.6838 12 7 6.4102 3.3918 -0.4895 13 6 7.8619 3.2196 -0.5843 14 6 8.4814 4.4595 -1.2322 15 6 8.0771 4.7169 -2.6610 16 1 7.1801 5.2788 -2.8756 17 6 8.8555 4.2400 -3.6943 18 7 9.9823 3.6139 -3.4338 19 14 8.3094 4.4829 -5.4641 20 1 8.1856 5.9351 -5.7490 21 1 9.3140 3.8835 -6.3788 22 1 6.9949 3.8239 -5.6714 23 6 8.7270 5.6761 -0.3375 24 6 9.9080 4.8321 -0.8236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.5533 -0.4556 -1.3958 31 1 3.6810 1.1523 -2.1484 32 1 5.0828 0.4498 -1.3056 33 1 4.1783 4.1964 1.5468 34 1 2.6147 3.3567 1.4120 35 1 3.9682 2.5846 2.2722 36 1 5.9891 4.1781 -0.8707 37 1 8.0848 2.3425 -1.1918 38 1 8.2778 3.0853 0.4142 39 1 10.5655 3.3427 -4.1600 40 1 8.5963 6.6626 -0.7822 41 1 8.4478 5.5929 0.7128 42 1 10.4051 4.1941 -0.0929 43 1 10.5542 5.2630 -1.5884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360470157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -99.862731 kcal Electronic energy + Delta-G solvation = -21255.452126 eV Core-core repulsion = 18107.106595 eV Total energy + Delta-G solvation = -3148.345531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08140 -39.13131 -38.45390 -36.28765 -34.95736 -33.89768 -31.60588 -28.62626 -28.09633 -27.22247 -26.25155 -24.89373 -22.92875 -21.93804 -21.33687 -20.38629 -18.53209 -17.93274 -17.28686 -16.81454 -16.70355 -16.35330 -16.23449 -15.82701 -15.52163 -14.87005 -14.71814 -14.45772 -14.32448 -14.03995 -13.50225 -13.36185 -13.25122 -13.06628 -12.91260 -12.78865 -12.54118 -12.38962 -12.38700 -12.00284 -11.84729 -11.81953 -11.57148 -11.39338 -10.94565 -10.77103 -10.49394 -10.40743 -9.99974 -9.83396 -8.07345 -6.23150 1.44213 1.45764 1.51967 1.73811 2.33113 2.43706 2.95583 3.18580 3.51883 3.66546 3.83618 3.99697 4.15663 4.27338 4.35526 4.45303 4.47738 4.53026 4.55931 4.59776 4.64868 4.67118 4.73456 4.81568 4.86116 4.90060 4.91716 4.97785 5.02407 5.08273 5.26296 5.29201 5.30770 5.35148 5.57777 5.63298 5.74715 5.78239 6.30909 6.37142 6.79901 6.85447 7.41118 7.46877 8.98186 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.004615 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.435655 B = 6065.765670 C = 6867.723454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.070 3.930 4 C -0.070 4.070 5 H 0.065 0.935 6 C -0.143 4.143 7 C -0.096 4.096 8 H 0.114 0.886 9 C -0.139 4.139 10 C 0.510 3.490 11 O -0.597 6.597 12 N -0.700 5.700 13 C 0.178 3.822 14 C 0.001 3.999 15 C -0.504 4.504 16 H 0.066 0.934 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.271 1.271 23 C -0.179 4.179 24 C -0.149 4.149 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.022 0.978 38 H 0.036 0.964 39 H 0.258 0.742 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 0.313 6.164 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.006 4.006 4 C -0.089 4.089 5 H 0.084 0.916 6 C -0.201 4.201 7 C -0.118 4.118 8 H 0.132 0.868 9 C -0.196 4.196 10 C 0.298 3.702 11 O -0.478 6.478 12 N -0.349 5.349 13 C 0.054 3.946 14 C 0.000 4.000 15 C -0.542 4.542 16 H 0.084 0.916 17 C -0.178 4.178 18 N -0.547 5.547 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.197 1.197 23 C -0.216 4.216 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.601 -0.653 6.436 18.752 hybrid contribution 0.353 0.270 -1.298 1.372 sum -17.248 -0.383 5.138 18.001 Atomic orbital electron populations 1.22915 0.79480 1.03627 1.01012 1.87850 1.21430 1.28825 1.95632 1.22643 0.91430 0.84591 1.01948 1.20856 0.94369 0.94728 0.98906 0.91639 1.21764 0.99641 1.01473 0.97201 1.21296 0.89130 0.98464 1.02862 0.86808 1.21815 1.03332 1.00518 0.93978 1.21209 0.90739 0.81212 0.77081 1.90630 1.75600 1.34739 1.46852 1.45935 1.07708 1.24407 1.56844 1.20574 0.80002 0.97614 0.96448 1.19079 0.96239 0.91145 0.93508 1.20648 1.09755 1.34473 0.89289 0.91588 1.25720 0.95120 0.94280 1.02644 1.70129 1.11916 1.39699 1.32918 0.85739 0.77943 0.78547 0.80151 1.19290 1.21865 1.19652 1.23034 1.04077 0.96217 0.98275 1.22332 0.91989 1.03310 1.01060 0.92837 0.93094 0.89003 0.90827 0.91614 0.91940 0.91705 0.95463 0.91312 0.88352 0.92997 0.75334 0.95929 0.94607 0.93271 0.89733 0.89585 0.91625 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.28 10.24 -148.98 -1.53 -10.80 16 3 C 0.07 1.34 5.10 71.98 0.37 1.71 16 4 C -0.07 -1.80 1.91 -10.79 -0.02 -1.82 16 5 H 0.07 2.02 7.86 -2.39 -0.02 2.00 16 6 C -0.14 -4.21 8.83 71.98 0.64 -3.57 16 7 C -0.10 -2.39 2.31 -11.54 -0.03 -2.42 16 8 H 0.11 2.30 8.12 -2.39 -0.02 2.28 16 9 C -0.14 -2.67 8.75 71.99 0.63 -2.04 16 10 C 0.51 18.30 5.72 87.66 0.50 18.80 16 11 O -0.60 -26.61 15.86 -3.03 -0.05 -26.66 16 12 N -0.70 -26.17 5.47 -463.07 -2.53 -28.70 16 13 C 0.18 8.13 5.52 86.38 0.48 8.60 16 14 C 0.00 0.05 1.63 -52.93 -0.09 -0.04 16 15 C -0.50 -25.44 8.62 25.60 0.22 -25.22 16 16 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 17 C 0.02 1.20 5.41 84.66 0.46 1.66 16 18 N -0.91 -51.26 11.95 21.45 0.26 -51.01 16 19 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 24 C -0.15 -6.94 8.86 30.62 0.27 -6.67 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.10 6.23 -2.39 -0.01 1.09 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.78 7.82 -2.39 -0.02 1.76 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.03 0.97 6.89 -2.39 -0.02 0.95 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.25 6.47 -2.39 -0.02 1.24 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 13.53 8.29 -92.71 -0.77 12.76 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.07 3.48 7.67 -2.39 -0.02 3.46 16 Total: -1.00 -65.46 351.12 3.36 -62.10 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.20 Total: 27.53 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.98 Total: -16.29 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.28 Total: -79.71 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.57 Total: -37.46 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -65.46 3.36 -62.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360470157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.765 kcal (2) G-P(sol) polarization free energy of solvation -65.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds