Wall clock time and date at job start Mon Mar 30 2020 00:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00364 * 2 1 4 4 C 1.52996 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47310 * 304.99700 * 4 3 2 6 6 C 1.52997 * 109.46910 * 65.00009 * 4 3 2 7 7 C 1.53002 * 109.47092 * 184.99934 * 4 3 2 8 8 H 1.09002 * 109.47160 * 300.00282 * 7 4 3 9 9 C 1.52996 * 109.47092 * 179.97438 * 7 4 3 10 10 C 1.50701 * 109.47044 * 60.00124 * 7 4 3 11 11 O 1.21277 * 120.00124 * 37.10095 * 10 7 4 12 12 N 1.34779 * 119.99735 * 217.10208 * 10 7 4 13 13 C 1.46506 * 119.99750 * 185.12734 * 12 10 7 14 14 C 1.52997 * 109.47109 * 175.26336 * 13 12 10 15 15 C 1.50709 * 115.55031 * 63.92681 * 14 13 12 16 16 H 1.07997 * 119.99890 * 266.83286 * 15 14 13 17 17 C 1.37880 * 119.99637 * 86.82543 * 15 14 13 18 18 N 1.31510 * 120.00505 * 2.60291 * 17 15 14 19 19 Si 1.86806 * 119.99636 * 182.59692 * 17 15 14 20 20 H 1.48495 * 109.46803 * 60.00538 * 19 17 15 21 21 H 1.48500 * 109.46737 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46986 * 300.00579 * 19 17 15 23 23 C 1.53000 * 117.50247 * 278.25861 * 14 13 12 24 24 C 1.53000 * 117.50151 * 209.59407 * 14 13 12 25 25 H 1.08998 * 109.46642 * 60.00138 * 1 2 3 26 26 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46989 * 299.99933 * 1 2 3 28 28 H 1.09001 * 109.46765 * 299.99902 * 3 2 1 29 29 H 1.09006 * 109.47008 * 59.99379 * 3 2 1 30 30 H 1.09000 * 109.46875 * 179.97438 * 6 4 3 31 31 H 1.08993 * 109.47402 * 299.99792 * 6 4 3 32 32 H 1.09001 * 109.47243 * 60.00417 * 6 4 3 33 33 H 1.09003 * 109.46977 * 186.16415 * 9 7 4 34 34 H 1.08989 * 109.47512 * 306.17135 * 9 7 4 35 35 H 1.09003 * 109.47162 * 66.17342 * 9 7 4 36 36 H 0.97002 * 120.00527 * 5.11875 * 12 10 7 37 37 H 1.08998 * 109.46491 * 295.26422 * 13 12 10 38 38 H 1.08994 * 109.47343 * 55.26011 * 13 12 10 39 39 H 0.96994 * 120.00182 * 185.00997 * 18 17 15 40 40 H 1.08998 * 117.49120 * 0.02562 * 23 14 13 41 41 H 1.09002 * 117.50139 * 145.01864 * 23 14 13 42 42 H 1.08992 * 117.50316 * 214.98096 * 24 14 13 43 43 H 1.09003 * 117.49310 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1573 2.5769 0.1264 8 1 3.8420 3.1930 -0.7157 9 6 5.6825 2.4560 0.1276 10 6 3.7035 3.2153 1.4138 11 8 3.5695 2.5393 2.4117 12 7 3.4464 4.5377 1.4561 13 6 3.1144 5.1789 2.7309 14 6 2.9858 6.6893 2.5238 15 6 1.8676 7.1277 1.6135 16 1 2.0569 7.2827 0.5616 17 6 0.6028 7.3307 2.1236 18 7 0.3836 7.1916 3.4129 19 14 -0.7994 7.8036 0.9835 20 1 -0.9898 6.7395 -0.0346 21 1 -2.0470 7.9629 1.7730 22 1 -0.4758 9.0848 0.3059 23 6 4.2755 7.5122 2.5052 24 6 3.3306 7.5965 3.7066 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 5.0828 0.4507 -1.3061 31 1 3.5533 -0.4555 -1.3960 32 1 3.6810 1.1525 -2.1484 33 1 6.1242 3.4324 0.3266 34 1 5.9907 1.7532 0.9016 35 1 6.0193 2.0963 -0.8447 36 1 3.4813 5.0650 0.6426 37 1 2.1699 4.7813 3.1023 38 1 3.9034 4.9774 3.4553 39 1 -0.5186 7.2628 3.7619 40 1 5.2156 6.9774 2.6401 41 1 4.3151 8.3709 1.8349 42 1 2.7490 8.5105 3.8261 43 1 3.6486 7.1172 4.6324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360470158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:28 Heat of formation + Delta-G solvation = -101.639771 kcal Electronic energy + Delta-G solvation = -21503.848410 eV Core-core repulsion = 18355.425820 eV Total energy + Delta-G solvation = -3148.422589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11095 -39.11844 -38.44658 -36.45134 -34.94497 -33.96030 -31.39939 -28.64226 -28.01224 -27.31872 -26.74478 -24.55058 -22.96520 -21.94610 -21.34654 -20.40059 -18.47726 -17.87665 -17.43063 -16.91467 -16.74473 -16.62026 -16.18532 -15.93613 -15.64297 -14.89671 -14.53068 -14.50247 -14.19335 -13.95638 -13.52617 -13.36790 -13.28841 -12.94809 -12.86767 -12.79809 -12.58091 -12.42922 -12.39947 -12.14158 -12.03593 -11.67069 -11.56388 -11.41461 -10.97877 -10.73092 -10.66456 -10.42600 -10.03979 -9.82629 -8.11346 -6.25165 1.42248 1.42921 1.49652 1.74091 2.36335 2.42995 2.73191 3.17499 3.48472 3.80700 3.85725 3.86794 4.13615 4.25136 4.34101 4.41327 4.44285 4.46819 4.51853 4.54763 4.63508 4.70410 4.72560 4.75772 4.79987 4.92887 4.97169 5.00178 5.06310 5.10597 5.19725 5.27648 5.37852 5.50030 5.55961 5.60942 5.70353 5.76099 6.14132 6.34988 6.78248 6.84246 7.40251 7.45069 8.96276 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.005807 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.312540 B = 4820.891463 C = 5916.359907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.063 3.937 4 C -0.070 4.070 5 H 0.064 0.936 6 C -0.134 4.134 7 C -0.095 4.095 8 H 0.114 0.886 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.180 3.820 14 C 0.001 3.999 15 C -0.502 4.502 16 H 0.066 0.934 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.293 1.293 22 H -0.268 1.268 23 C -0.175 4.175 24 C -0.155 4.155 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.411 0.589 37 H 0.021 0.979 38 H 0.036 0.964 39 H 0.258 0.742 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -9.421 -11.546 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.014 4.014 4 C -0.089 4.089 5 H 0.083 0.917 6 C -0.191 4.191 7 C -0.117 4.117 8 H 0.132 0.868 9 C -0.191 4.191 10 C 0.290 3.710 11 O -0.479 6.479 12 N -0.349 5.349 13 C 0.055 3.945 14 C 0.001 3.999 15 C -0.540 4.540 16 H 0.084 0.916 17 C -0.177 4.177 18 N -0.547 5.547 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.219 1.219 22 H -0.193 1.193 23 C -0.212 4.212 24 C -0.193 4.193 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.504 -9.951 -10.684 15.984 hybrid contribution -1.591 0.936 0.107 1.849 sum 4.913 -9.015 -10.577 14.741 Atomic orbital electron populations 1.22912 0.80021 1.03945 1.00234 1.87784 1.20956 1.28107 1.95471 1.22661 0.94762 0.84513 0.99446 1.20944 0.91946 0.95123 1.00896 0.91703 1.21775 1.02197 1.00671 0.94495 1.21355 0.99355 0.96578 0.94390 0.86758 1.21736 0.90332 1.02796 1.04190 1.21426 0.76301 0.81825 0.91402 1.90639 1.55001 1.63313 1.38975 1.45977 1.68653 1.08481 1.11742 1.20517 0.96456 0.92994 0.84499 1.19087 0.94085 0.87906 0.98845 1.20651 0.93291 1.45729 0.94329 0.91591 1.25717 1.01180 0.94893 0.95938 1.70118 1.21157 1.50263 1.13166 0.85781 0.78703 0.79117 0.79057 1.19512 1.21898 1.19314 1.23006 0.93606 1.03142 1.01442 1.22370 1.02822 1.02113 0.92008 0.92798 0.87561 0.95254 0.91802 0.96405 0.90363 0.92351 0.91246 0.91704 0.92975 0.88015 0.75318 0.96047 0.94615 0.93302 0.89319 0.89582 0.91784 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.40 -11.84 10.24 -148.98 -1.53 -13.37 16 3 C 0.06 1.85 5.15 71.98 0.37 2.22 16 4 C -0.07 -1.81 1.91 -10.80 -0.02 -1.83 16 5 H 0.06 2.00 7.86 -2.39 -0.02 1.98 16 6 C -0.13 -2.45 8.74 71.98 0.63 -1.82 16 7 C -0.10 -2.37 2.32 -11.54 -0.03 -2.40 16 8 H 0.11 2.27 8.06 -2.39 -0.02 2.25 16 9 C -0.13 -2.61 8.64 71.98 0.62 -1.99 16 10 C 0.50 18.13 5.62 87.66 0.49 18.62 16 11 O -0.60 -27.00 15.93 -3.02 -0.05 -27.04 16 12 N -0.70 -26.23 5.47 -463.06 -2.53 -28.76 16 13 C 0.18 8.22 5.51 86.38 0.48 8.69 16 14 C 0.00 0.07 1.50 -52.93 -0.08 -0.01 16 15 C -0.50 -25.26 8.55 25.60 0.22 -25.04 16 16 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.02 1.22 5.42 84.66 0.46 1.68 16 18 N -0.91 -51.48 12.60 21.45 0.27 -51.21 16 19 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.17 -6.89 9.96 30.62 0.30 -6.59 16 24 C -0.15 -7.13 9.09 30.62 0.28 -6.85 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.02 0.65 6.76 -2.38 -0.02 0.64 16 30 H 0.08 1.12 6.57 -2.39 -0.02 1.11 16 31 H 0.06 1.14 7.82 -2.39 -0.02 1.13 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.34 6.78 -2.39 -0.02 1.32 16 36 H 0.41 13.59 8.23 -92.71 -0.76 12.82 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 40 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.06 3.21 8.14 -2.39 -0.02 3.20 16 43 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -65.57 352.54 3.37 -62.20 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.21 Total: 27.92 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.97 Total: -13.46 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.26 Total: -79.97 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.57 Total: -40.41 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -65.57 3.37 -62.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360470158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.443 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds