Wall clock time and date at job start Mon Mar 30 2020 01:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53777 * 87.08241 * 89.12535 * 5 4 3 7 7 C 1.52999 * 113.61195 * 139.97738 * 6 5 4 8 8 C 1.53003 * 109.46794 * 87.50795 * 7 6 5 9 9 N 1.46506 * 109.46900 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99518 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00380 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99422 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.46804 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47049 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00343 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99810 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99942 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47150 * 60.00223 * 18 16 14 20 20 H 1.48497 * 109.47044 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47462 * 300.00109 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 24 24 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.08999 * 113.61060 * 203.67958 * 5 4 3 30 30 H 1.08997 * 113.61198 * 334.57751 * 5 4 3 31 31 H 1.08994 * 113.61814 * 270.88533 * 6 5 4 32 32 H 1.09005 * 109.47016 * 207.50089 * 7 6 5 33 33 H 1.08994 * 109.47189 * 327.50593 * 7 6 5 34 34 H 1.09005 * 109.46762 * 299.99449 * 8 7 6 35 35 H 1.08994 * 109.47418 * 59.99938 * 8 7 6 36 36 H 0.97003 * 119.99965 * 359.97438 * 9 8 7 37 37 H 1.09001 * 109.47475 * 299.99551 * 12 10 9 38 38 H 1.09000 * 109.47506 * 60.00358 * 12 10 9 39 39 H 1.09005 * 109.46762 * 299.99425 * 13 12 10 40 40 H 1.08994 * 109.47418 * 59.99914 * 13 12 10 41 41 H 0.97006 * 119.99462 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.61578 * 25.34440 * 22 4 3 43 43 H 1.08997 * 113.61673 * 156.25409 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 3.8427 3.4139 -0.7089 7 6 5.0062 4.3569 -1.0220 8 6 4.7457 5.0635 -2.3538 9 7 5.8595 5.9669 -2.6533 10 6 5.8475 6.6993 -3.7846 11 8 4.9145 6.6109 -4.5544 12 6 6.9935 7.6281 -4.0930 13 6 6.7329 8.3348 -5.4248 14 6 7.8791 9.2632 -5.7335 15 1 8.7102 9.3417 -5.0482 16 6 7.8670 10.0124 -6.8909 17 7 6.8553 9.9165 -7.7257 18 14 9.2875 11.1637 -7.2732 19 1 10.5471 10.3823 -7.3649 20 1 9.0353 11.8486 -8.5664 21 1 9.4099 12.1749 -6.1926 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 5.0451 1.7286 -1.4900 30 1 3.3679 1.8317 -2.1809 31 1 2.8687 3.8628 -0.9033 32 1 5.0961 5.0989 -0.2285 33 1 5.9306 3.7833 -1.0896 34 1 4.6558 4.3215 -3.1472 35 1 3.8213 5.6370 -2.2861 36 1 6.6055 6.0378 -2.0374 37 1 7.0833 8.3703 -3.2998 38 1 7.9180 7.0547 -4.1604 39 1 6.6430 7.5929 -6.2183 40 1 5.8085 8.9084 -5.3570 41 1 6.8470 10.4434 -8.5401 42 1 3.2610 3.1559 1.4104 43 1 4.9698 2.6617 1.0404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360473684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:24 Heat of formation + Delta-G solvation = -90.909347 kcal Electronic energy + Delta-G solvation = -19718.197819 eV Core-core repulsion = 16570.240536 eV Total energy + Delta-G solvation = -3147.957283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03190 -38.99350 -36.93780 -34.68669 -33.39973 -31.65266 -31.03466 -30.00937 -26.13058 -25.92859 -24.39113 -23.21067 -22.02521 -21.31045 -19.91521 -19.38946 -16.96238 -16.73323 -16.08217 -15.88423 -15.60632 -15.48246 -15.17211 -14.63359 -14.38625 -14.02697 -13.76476 -13.15255 -13.01250 -12.75840 -12.70082 -12.32923 -12.13855 -12.08174 -11.74776 -11.56920 -11.27217 -11.14627 -11.05662 -10.88245 -10.62790 -10.55228 -10.34510 -9.90902 -9.76839 -9.62091 -9.13579 -8.94849 -8.69209 -8.28545 -5.92819 -3.97219 3.21068 3.33892 3.36502 3.40809 3.42557 3.63110 4.25005 4.33597 4.47584 4.49993 4.59591 4.69227 4.80386 4.96392 4.98706 5.05710 5.21392 5.30171 5.38785 5.41743 5.41803 5.51376 5.52072 5.58759 5.65542 5.73793 5.75693 5.90057 6.01289 6.11043 6.21372 6.28397 6.29895 6.81926 6.93281 6.94755 7.77639 7.90822 7.97493 8.11237 8.42537 8.86324 9.11555 9.65938 11.18106 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.054995 B = 0.002281 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.017285 B =12274.502875 C =12611.299528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.062 3.938 5 C -0.157 4.157 6 C -0.098 4.098 7 C -0.121 4.121 8 C 0.120 3.880 9 N -0.746 5.746 10 C 0.508 3.492 11 O -0.536 6.536 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.135 4.135 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 -20.248 19.948 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.286 6.286 4 C 0.004 3.996 5 C -0.194 4.194 6 C -0.117 4.117 7 C -0.159 4.159 8 C -0.004 4.004 9 N -0.400 5.400 10 C 0.296 3.704 11 O -0.411 6.411 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.173 4.173 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.537 -20.083 19.187 28.779 hybrid contribution 1.268 0.400 0.032 1.330 sum -6.269 -19.682 19.219 28.215 Atomic orbital electron populations 1.21753 0.93673 1.02270 1.03275 1.22522 0.95629 0.83801 0.99998 1.87898 1.19805 1.26312 1.94608 1.23021 0.81555 0.97820 0.97212 1.23573 1.01496 0.96539 0.97835 1.22394 0.99314 0.94223 0.95756 1.21792 0.98403 0.98660 0.97000 1.21233 0.90356 0.92640 0.96180 1.46231 1.24011 1.45223 1.24554 1.21550 0.88941 0.80169 0.79739 1.90665 1.36783 1.65910 1.47791 1.21862 0.94824 0.97088 1.03261 1.18893 0.97125 0.94947 0.89119 1.21200 1.05476 1.24082 1.05819 0.92661 1.25037 0.95988 0.97115 0.96317 1.69995 1.30364 1.40963 1.11522 0.86642 0.82674 0.81004 0.77527 1.20281 1.21300 1.20268 1.23243 1.01368 0.95387 0.97282 0.91699 0.91099 0.91851 0.93322 0.93450 0.91142 0.89208 0.90734 0.88511 0.91153 0.91284 0.91973 0.92000 0.77061 0.90309 0.90321 0.95851 0.95838 0.92916 0.90588 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.40 6.50 37.16 0.24 0.64 16 3 O -0.37 -3.50 10.28 -35.23 -0.36 -3.86 16 4 C 0.06 0.49 4.36 -25.92 -0.11 0.38 16 5 C -0.16 -1.31 7.47 -25.92 -0.19 -1.50 16 6 C -0.10 -0.86 3.59 -89.80 -0.32 -1.18 16 7 C -0.12 -1.07 5.17 -26.73 -0.14 -1.21 16 8 C 0.12 1.55 5.67 -4.04 -0.02 1.52 16 9 N -0.75 -10.82 5.56 -60.29 -0.33 -11.16 16 10 C 0.51 10.16 7.83 -10.98 -0.09 10.07 16 11 O -0.54 -13.21 15.98 5.56 0.09 -13.12 16 12 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 13 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 14 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C -0.14 -1.00 7.47 -25.91 -0.19 -1.20 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 29 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.43 8.47 -40.82 -0.35 4.08 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -34.97 357.03 -8.52 -43.49 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.87 Total: -1.57 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.13 Total: -8.95 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.40 Total: -38.26 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.27 Total: -16.98 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.97 -8.52 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360473684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.424 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds