Wall clock time and date at job start Mon Mar 30 2020 01:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53777 * 87.08241 * 89.12535 * 5 4 3 7 7 C 1.52999 * 113.61195 * 139.97738 * 6 5 4 8 8 C 1.53003 * 109.46794 * 87.50795 * 7 6 5 9 9 N 1.46506 * 109.46900 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99518 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00380 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99422 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.46804 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47049 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00343 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99810 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99942 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47150 * 60.00223 * 18 16 14 20 20 H 1.48497 * 109.47044 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47462 * 300.00109 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 24 24 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.08999 * 113.61060 * 203.67958 * 5 4 3 30 30 H 1.08997 * 113.61198 * 334.57751 * 5 4 3 31 31 H 1.08994 * 113.61814 * 270.88533 * 6 5 4 32 32 H 1.09005 * 109.47016 * 207.50089 * 7 6 5 33 33 H 1.08994 * 109.47189 * 327.50593 * 7 6 5 34 34 H 1.09005 * 109.46762 * 299.99449 * 8 7 6 35 35 H 1.08994 * 109.47418 * 59.99938 * 8 7 6 36 36 H 0.97003 * 119.99965 * 359.97438 * 9 8 7 37 37 H 1.09001 * 109.47475 * 299.99551 * 12 10 9 38 38 H 1.09000 * 109.47506 * 60.00358 * 12 10 9 39 39 H 1.09005 * 109.46762 * 299.99425 * 13 12 10 40 40 H 1.08994 * 109.47418 * 59.99914 * 13 12 10 41 41 H 0.97006 * 119.99462 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.61578 * 25.34440 * 22 4 3 43 43 H 1.08997 * 113.61673 * 156.25409 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 3.8427 3.4139 -0.7089 7 6 5.0062 4.3569 -1.0220 8 6 4.7457 5.0635 -2.3538 9 7 5.8595 5.9669 -2.6533 10 6 5.8475 6.6993 -3.7846 11 8 4.9145 6.6109 -4.5544 12 6 6.9935 7.6281 -4.0930 13 6 6.7329 8.3348 -5.4248 14 6 7.8791 9.2632 -5.7335 15 1 8.7102 9.3417 -5.0482 16 6 7.8670 10.0124 -6.8909 17 7 6.8553 9.9165 -7.7257 18 14 9.2875 11.1637 -7.2732 19 1 10.5471 10.3823 -7.3649 20 1 9.0353 11.8486 -8.5664 21 1 9.4099 12.1749 -6.1926 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 5.0451 1.7286 -1.4900 30 1 3.3679 1.8317 -2.1809 31 1 2.8687 3.8628 -0.9033 32 1 5.0961 5.0989 -0.2285 33 1 5.9306 3.7833 -1.0896 34 1 4.6558 4.3215 -3.1472 35 1 3.8213 5.6370 -2.2861 36 1 6.6055 6.0378 -2.0374 37 1 7.0833 8.3703 -3.2998 38 1 7.9180 7.0547 -4.1604 39 1 6.6430 7.5929 -6.2183 40 1 5.8085 8.9084 -5.3570 41 1 6.8470 10.4434 -8.5401 42 1 3.2610 3.1559 1.4104 43 1 4.9698 2.6617 1.0404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360473684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:24 Heat of formation + Delta-G solvation = -114.748873 kcal Electronic energy + Delta-G solvation = -19719.231578 eV Core-core repulsion = 16570.240536 eV Total energy + Delta-G solvation = -3148.991043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84581 -40.40147 -37.66059 -35.97125 -35.51421 -33.14132 -32.16823 -31.05463 -27.86590 -26.64634 -25.61461 -23.73497 -23.48526 -22.59184 -21.19538 -20.35658 -18.80113 -17.58414 -17.31987 -17.00866 -16.84858 -16.54079 -16.40918 -16.12575 -15.66899 -15.03603 -14.79558 -14.34509 -14.17103 -14.10642 -13.67740 -13.35908 -13.25385 -13.21537 -12.90338 -12.77043 -12.53942 -12.49280 -12.24435 -12.00222 -11.90077 -11.75216 -11.63308 -11.32063 -11.29501 -11.02127 -10.65377 -10.55885 -10.36654 -10.04660 -8.17306 -6.31804 1.42434 1.47414 1.55148 1.73110 2.28977 2.46353 2.67300 3.15287 3.58463 3.70218 3.84550 3.93457 4.05441 4.17329 4.20177 4.32747 4.35872 4.44477 4.48916 4.53648 4.57323 4.59003 4.73040 4.84174 4.85134 4.93933 5.00055 5.03515 5.05373 5.14999 5.19664 5.25626 5.36751 5.47672 5.50634 5.55001 5.63507 5.85929 6.17976 6.37324 6.65802 6.86734 7.37471 7.39330 8.95259 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.054995 B = 0.002281 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.017285 B =12274.502875 C =12611.299528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.394 6.394 4 C 0.058 3.942 5 C -0.158 4.158 6 C -0.103 4.103 7 C -0.105 4.105 8 C 0.118 3.882 9 N -0.718 5.718 10 C 0.507 3.493 11 O -0.594 6.594 12 C -0.119 4.119 13 C 0.041 3.959 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.939 5.939 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.262 1.262 22 C -0.124 4.124 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.418 0.582 37 H 0.105 0.895 38 H 0.106 0.894 39 H -0.019 1.019 40 H -0.020 1.020 41 H 0.263 0.737 42 H 0.070 0.930 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 -20.827 22.402 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.313 6.313 4 C 0.000 4.000 5 C -0.196 4.196 6 C -0.123 4.123 7 C -0.143 4.143 8 C -0.005 4.005 9 N -0.371 5.371 10 C 0.295 3.705 11 O -0.475 6.475 12 C -0.159 4.159 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.096 0.904 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.162 4.162 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.255 0.745 37 H 0.124 0.876 38 H 0.124 0.876 39 H -0.001 1.001 40 H -0.001 1.001 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.965 -20.691 21.720 30.406 hybrid contribution 0.404 0.519 -0.717 0.973 sum -4.561 -20.172 21.002 29.476 Atomic orbital electron populations 1.21778 0.93345 1.03314 1.02473 1.22690 0.96027 0.82999 1.00822 1.87872 1.20900 1.27849 1.94719 1.23141 0.81046 0.98937 0.96868 1.23621 1.02069 0.96426 0.97474 1.22353 0.98236 0.94336 0.97326 1.21714 0.99234 0.98768 0.94535 1.21356 0.89078 0.91868 0.98229 1.45929 1.24892 1.43494 1.22833 1.21404 0.87921 0.80505 0.80626 1.90652 1.38752 1.67933 1.50140 1.21642 0.96222 0.97846 1.00167 1.18696 0.95302 0.93943 0.91752 1.21704 1.06117 1.24010 1.06367 0.90428 1.26191 0.99186 0.99188 0.96126 1.70186 1.33115 1.42344 1.12213 0.85332 0.78713 0.78518 0.77408 1.18614 1.21392 1.18636 1.23238 1.02536 0.94416 0.95986 0.92922 0.89153 0.92191 0.93021 0.91987 0.89246 0.87653 0.92650 0.90707 0.89662 0.89175 0.93403 0.93744 0.74473 0.87643 0.87571 1.00090 1.00130 0.92871 0.91103 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.39 -7.31 10.28 -148.98 -1.53 -8.84 16 4 C 0.06 0.82 4.36 31.12 0.14 0.96 16 5 C -0.16 -2.46 7.47 31.12 0.23 -2.23 16 6 C -0.10 -1.68 3.59 -10.26 -0.04 -1.72 16 7 C -0.10 -1.61 5.17 30.59 0.16 -1.45 16 8 C 0.12 2.98 5.67 86.38 0.49 3.47 16 9 N -0.72 -19.64 5.56 -463.05 -2.57 -22.21 16 10 C 0.51 20.32 7.83 87.66 0.69 21.01 16 11 O -0.59 -30.66 15.98 -3.02 -0.05 -30.71 16 12 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 13 C 0.04 2.32 4.26 29.85 0.13 2.45 16 14 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 15 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.57 5.46 84.66 0.46 -0.11 16 17 N -0.94 -60.54 13.29 21.45 0.28 -60.26 16 18 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 C -0.12 -1.55 7.47 31.12 0.23 -1.32 16 23 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.92 7.88 -2.39 -0.02 0.90 16 29 H 0.11 1.29 7.90 -2.39 -0.02 1.27 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 32 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.09 1.07 7.84 -2.39 -0.02 1.05 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.42 7.89 8.47 -92.71 -0.79 7.10 16 37 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 38 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 39 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 40 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 41 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.12 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -80.20 357.03 2.43 -77.77 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.18 Total: 12.25 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.10 Total: -14.72 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.29 Total: -82.47 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.58 Total: -39.55 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -80.20 2.43 -77.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360473684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.984 kcal (2) G-P(sol) polarization free energy of solvation -80.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds