Wall clock time and date at job start Mon Mar 30 2020 01:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00535 * 2 1 4 4 C 1.52997 * 109.46998 * 89.99914 * 3 2 1 5 5 H 1.09001 * 109.47502 * 54.99885 * 4 3 2 6 6 C 1.53006 * 109.46943 * 295.00388 * 4 3 2 7 7 C 1.53002 * 109.46886 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47454 * 59.99664 * 7 6 4 9 9 C 1.52996 * 109.46969 * 300.00051 * 8 7 6 10 10 C 1.52997 * 109.47131 * 60.00062 * 9 8 7 11 11 H 1.09001 * 109.47502 * 60.00153 * 10 9 8 12 12 O 1.42905 * 109.47264 * 179.97438 * 10 9 8 13 13 C 1.34789 * 119.99737 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99629 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99951 * 0.02562 * 13 2 1 16 16 C 1.52994 * 109.46929 * 179.97438 * 15 13 2 17 17 C 1.50708 * 109.47016 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99923 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99874 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47569 * 119.99701 * 21 19 17 24 24 H 1.48507 * 109.46888 * 239.99899 * 21 19 17 25 25 H 1.08995 * 109.47081 * 90.00213 * 1 2 3 26 26 H 1.09002 * 109.46961 * 209.99802 * 1 2 3 27 27 H 1.08996 * 109.46617 * 330.00111 * 1 2 3 28 28 H 1.08998 * 109.46795 * 330.00105 * 3 2 1 29 29 H 1.09000 * 109.47333 * 209.99665 * 3 2 1 30 30 H 1.08996 * 109.47261 * 299.99767 * 6 4 3 31 31 H 1.09001 * 109.47377 * 60.00309 * 6 4 3 32 32 H 1.09002 * 109.47097 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47006 * 299.99766 * 7 6 4 34 34 H 1.09000 * 109.46497 * 59.99891 * 8 7 6 35 35 H 1.09000 * 109.47312 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47452 * 300.00062 * 9 8 7 37 37 H 1.09001 * 109.46997 * 179.97438 * 9 8 7 38 38 H 0.96696 * 114.00036 * 299.99911 * 12 10 9 39 39 H 1.08994 * 109.46962 * 300.00230 * 15 13 2 40 40 H 1.08997 * 109.46759 * 59.99847 * 15 13 2 41 41 H 1.08994 * 109.47688 * 300.00032 * 16 15 13 42 42 H 1.08997 * 109.47323 * 60.00440 * 16 15 13 43 43 H 0.96992 * 119.99957 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 2.9643 0.9130 1.9816 6 6 1.1180 2.0135 2.1265 7 6 1.3730 2.4557 3.5688 8 6 2.2442 3.7135 3.5702 9 6 3.5787 3.4103 2.8862 10 6 3.3237 2.9681 1.4439 11 1 2.8119 3.7652 0.9046 12 8 4.5702 2.6854 0.8048 13 6 2.1389 -1.1673 0.0005 14 8 3.3517 -1.1673 0.0010 15 6 1.3853 -2.4724 0.0005 16 6 2.3795 -3.6353 0.0005 17 6 1.6259 -4.9404 -0.0001 18 1 0.5460 -4.9404 -0.0009 19 6 2.3153 -6.1345 0.0003 20 7 3.6304 -6.1345 0.0008 21 14 1.3812 -7.7521 -0.0012 22 1 -0.0787 -7.4808 -0.0021 23 1 1.7412 -8.5306 -1.2135 24 1 1.7387 -8.5312 1.2115 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.6086 2.0283 -0.5138 29 1 3.1501 1.1383 -0.5138 30 1 0.6063 2.8108 1.5875 31 1 0.4972 1.1175 2.1252 32 1 0.4223 2.6721 4.0560 33 1 1.8849 1.6586 4.1081 34 1 1.7323 4.5105 3.0309 35 1 2.4263 4.0283 4.5978 36 1 4.0906 2.6132 3.4254 37 1 4.1992 4.3065 2.8868 38 1 5.1741 3.4399 0.7694 39 1 0.7583 -2.5298 0.8902 40 1 0.7590 -2.5302 -0.8897 41 1 3.0062 -3.5776 -0.8894 42 1 3.0061 -3.5776 0.8905 43 1 4.1154 -6.9745 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360783007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:44 Heat of formation + Delta-G solvation = -115.672970 kcal Electronic energy + Delta-G solvation = -21378.490469 eV Core-core repulsion = 18229.459355 eV Total energy + Delta-G solvation = -3149.031115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94211 -38.66018 -35.80492 -35.08911 -33.44643 -31.87907 -30.61673 -29.84690 -27.16639 -26.17569 -24.51449 -22.79818 -21.89499 -20.81497 -20.00789 -18.37121 -17.37531 -16.79515 -16.03169 -15.71594 -15.56908 -14.82370 -14.63543 -14.39269 -14.07582 -13.89627 -13.33703 -13.20892 -12.97915 -12.74004 -12.26616 -12.12461 -12.08287 -11.97808 -11.71864 -11.50506 -11.14370 -11.02831 -10.93084 -10.88518 -10.55166 -10.45562 -10.29454 -9.94575 -9.88648 -9.55521 -9.08461 -8.87583 -8.30543 -8.23992 -5.91630 -3.95843 3.33878 3.35293 3.40651 3.43398 3.46483 4.06158 4.48155 4.50703 4.53087 4.78986 4.90734 4.99591 5.12688 5.20441 5.24637 5.27160 5.32013 5.36515 5.43154 5.52530 5.61628 5.63666 5.73399 5.82758 5.86299 5.91390 5.95847 6.05457 6.07319 6.25087 6.30323 6.31340 6.36462 6.88374 6.98448 7.59992 7.79837 7.86109 7.93019 8.13021 8.44103 8.87716 9.13347 9.67391 11.19414 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.003769 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.443103 B = 7427.943671 C = 7623.866774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.629 5.629 3 C 0.124 3.876 4 C -0.096 4.096 5 H 0.083 0.917 6 C -0.115 4.115 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.152 4.152 10 C 0.113 3.887 11 H 0.052 0.948 12 O -0.558 6.558 13 C 0.508 3.492 14 O -0.527 6.527 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.373 0.627 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 22.871 4.690 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.365 5.365 3 C 0.001 3.999 4 C -0.115 4.115 5 H 0.102 0.898 6 C -0.152 4.152 7 C -0.161 4.161 8 C -0.153 4.153 9 C -0.190 4.190 10 C 0.054 3.946 11 H 0.070 0.930 12 O -0.363 6.363 13 C 0.298 3.702 14 O -0.402 6.402 15 C -0.167 4.167 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.219 0.781 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.046 22.135 4.616 23.406 hybrid contribution -0.305 -0.267 0.146 0.431 sum -6.351 21.868 4.763 23.264 Atomic orbital electron populations 1.21852 0.80281 1.02998 1.01543 1.48049 1.06505 1.06041 1.75912 1.21316 0.98170 0.84884 0.95497 1.21542 0.95146 0.96999 0.97840 0.89834 1.21697 0.96686 1.01477 0.95343 1.21583 0.99692 0.97723 0.97063 1.21473 0.95492 0.97939 1.00404 1.22274 0.97993 1.01580 0.97123 1.21736 0.85029 0.96441 0.91403 0.93036 1.86668 1.28069 1.40755 1.80783 1.21573 0.88504 0.85536 0.74622 1.90683 1.14324 1.87194 1.47976 1.21867 1.00635 0.92132 1.02092 1.18909 0.93219 0.89430 0.98586 1.21267 0.92922 0.91040 1.51122 0.92607 1.25030 0.94811 0.99194 0.95385 1.70013 1.06046 1.26395 1.50366 0.86547 0.80002 0.83921 0.77556 1.19766 1.21037 1.21049 0.93077 0.90616 0.91427 0.91685 0.89099 0.92062 0.90668 0.91848 0.91697 0.92032 0.91892 0.90969 0.91919 0.78101 0.90452 0.90440 0.95857 0.95881 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.31 59.85 0.56 1.42 16 2 N -0.63 -9.73 2.70 -181.57 -0.49 -10.22 16 3 C 0.12 1.74 4.82 -4.04 -0.02 1.72 16 4 C -0.10 -1.20 2.14 -90.62 -0.19 -1.40 16 5 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 6 C -0.11 -1.12 4.19 -26.73 -0.11 -1.23 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 8 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 9 C -0.15 -1.36 5.54 -26.73 -0.15 -1.51 16 10 C 0.11 1.19 2.90 -26.73 -0.08 1.11 16 11 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 12 O -0.56 -6.81 12.56 -35.23 -0.44 -7.25 16 13 C 0.51 10.49 7.67 -10.98 -0.08 10.41 16 14 O -0.53 -13.27 15.56 5.56 0.09 -13.19 16 15 C -0.13 -2.71 4.19 -27.89 -0.12 -2.83 16 16 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -15.22 9.11 -34.43 -0.31 -15.54 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.96 13.29 55.43 0.74 -27.23 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 27 H 0.07 0.59 5.98 -51.93 -0.31 0.28 16 28 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.09 1.57 6.82 -51.93 -0.35 1.21 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 5.89 -51.93 -0.31 0.47 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.37 2.75 9.08 45.56 0.41 3.17 16 39 H 0.08 1.50 7.40 -51.93 -0.38 1.12 16 40 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -35.82 337.87 -7.81 -43.63 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.73 Total: -0.11 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.04 Total: -7.68 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.25 Total: -37.45 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.36 Total: -20.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.82 -7.81 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360783007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.046 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds