Wall clock time and date at job start Mon Mar 30 2020 01:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00535 * 2 1 4 4 C 1.52997 * 109.46998 * 89.99914 * 3 2 1 5 5 H 1.09001 * 109.47502 * 54.99885 * 4 3 2 6 6 C 1.53006 * 109.46943 * 295.00388 * 4 3 2 7 7 C 1.53002 * 109.46886 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47454 * 59.99664 * 7 6 4 9 9 C 1.52996 * 109.46969 * 300.00051 * 8 7 6 10 10 C 1.52997 * 109.47131 * 60.00062 * 9 8 7 11 11 H 1.09001 * 109.47502 * 60.00153 * 10 9 8 12 12 O 1.42905 * 109.47264 * 179.97438 * 10 9 8 13 13 C 1.34789 * 119.99737 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99629 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99951 * 0.02562 * 13 2 1 16 16 C 1.52994 * 109.46929 * 179.97438 * 15 13 2 17 17 C 1.50708 * 109.47016 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99923 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99874 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47569 * 119.99701 * 21 19 17 24 24 H 1.48507 * 109.46888 * 239.99899 * 21 19 17 25 25 H 1.08995 * 109.47081 * 90.00213 * 1 2 3 26 26 H 1.09002 * 109.46961 * 209.99802 * 1 2 3 27 27 H 1.08996 * 109.46617 * 330.00111 * 1 2 3 28 28 H 1.08998 * 109.46795 * 330.00105 * 3 2 1 29 29 H 1.09000 * 109.47333 * 209.99665 * 3 2 1 30 30 H 1.08996 * 109.47261 * 299.99767 * 6 4 3 31 31 H 1.09001 * 109.47377 * 60.00309 * 6 4 3 32 32 H 1.09002 * 109.47097 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47006 * 299.99766 * 7 6 4 34 34 H 1.09000 * 109.46497 * 59.99891 * 8 7 6 35 35 H 1.09000 * 109.47312 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47452 * 300.00062 * 9 8 7 37 37 H 1.09001 * 109.46997 * 179.97438 * 9 8 7 38 38 H 0.96696 * 114.00036 * 299.99911 * 12 10 9 39 39 H 1.08994 * 109.46962 * 300.00230 * 15 13 2 40 40 H 1.08997 * 109.46759 * 59.99847 * 15 13 2 41 41 H 1.08994 * 109.47688 * 300.00032 * 16 15 13 42 42 H 1.08997 * 109.47323 * 60.00440 * 16 15 13 43 43 H 0.96992 * 119.99957 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 2.9643 0.9130 1.9816 6 6 1.1180 2.0135 2.1265 7 6 1.3730 2.4557 3.5688 8 6 2.2442 3.7135 3.5702 9 6 3.5787 3.4103 2.8862 10 6 3.3237 2.9681 1.4439 11 1 2.8119 3.7652 0.9046 12 8 4.5702 2.6854 0.8048 13 6 2.1389 -1.1673 0.0005 14 8 3.3517 -1.1673 0.0010 15 6 1.3853 -2.4724 0.0005 16 6 2.3795 -3.6353 0.0005 17 6 1.6259 -4.9404 -0.0001 18 1 0.5460 -4.9404 -0.0009 19 6 2.3153 -6.1345 0.0003 20 7 3.6304 -6.1345 0.0008 21 14 1.3812 -7.7521 -0.0012 22 1 -0.0787 -7.4808 -0.0021 23 1 1.7412 -8.5306 -1.2135 24 1 1.7387 -8.5312 1.2115 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.6086 2.0283 -0.5138 29 1 3.1501 1.1383 -0.5138 30 1 0.6063 2.8108 1.5875 31 1 0.4972 1.1175 2.1252 32 1 0.4223 2.6721 4.0560 33 1 1.8849 1.6586 4.1081 34 1 1.7323 4.5105 3.0309 35 1 2.4263 4.0283 4.5978 36 1 4.0906 2.6132 3.4254 37 1 4.1992 4.3065 2.8868 38 1 5.1741 3.4399 0.7694 39 1 0.7583 -2.5298 0.8902 40 1 0.7590 -2.5302 -0.8897 41 1 3.0062 -3.5776 -0.8894 42 1 3.0061 -3.5776 0.8905 43 1 4.1154 -6.9745 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360783007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:44 Heat of formation + Delta-G solvation = -141.811797 kcal Electronic energy + Delta-G solvation = -21379.623934 eV Core-core repulsion = 18229.459355 eV Total energy + Delta-G solvation = -3150.164579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17937 -39.84468 -36.90064 -36.20659 -35.60261 -33.35952 -32.19903 -30.65173 -28.28287 -27.90708 -25.98869 -23.77416 -23.27836 -22.13769 -20.82043 -19.90543 -18.76430 -18.24639 -17.47696 -17.15010 -16.91139 -16.41880 -16.07717 -15.47177 -15.04446 -14.79572 -14.65810 -14.40597 -14.12791 -14.03319 -13.83857 -13.71103 -13.33084 -13.05123 -12.91492 -12.83351 -12.57073 -12.40741 -12.37085 -11.98193 -11.93667 -11.63365 -11.59448 -11.35044 -11.29105 -11.12635 -10.77273 -10.59404 -10.58911 -9.53753 -8.18564 -6.33435 1.41421 1.43627 1.56976 1.71863 2.12814 2.43197 3.14186 3.29725 3.64773 3.77795 3.82349 4.04068 4.15815 4.24257 4.31332 4.35253 4.40833 4.44715 4.46429 4.50511 4.57245 4.61158 4.73636 4.85302 4.93415 4.99274 5.02318 5.08367 5.17963 5.20735 5.21755 5.28657 5.36580 5.47255 5.51144 5.60300 5.70986 5.84107 6.16200 6.44040 6.85309 6.95294 7.31596 7.37318 8.94700 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029086 B = 0.003769 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.443103 B = 7427.943671 C = 7623.866774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.615 5.615 3 C 0.123 3.877 4 C -0.093 4.093 5 H 0.029 0.971 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.111 4.111 9 C -0.149 4.149 10 C 0.112 3.888 11 H 0.082 0.918 12 O -0.591 6.591 13 C 0.502 3.498 14 O -0.591 6.591 15 C -0.114 4.114 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.940 5.940 21 Si 0.977 3.023 22 H -0.250 1.250 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.391 0.609 39 H 0.102 0.898 40 H 0.102 0.898 41 H -0.021 1.021 42 H -0.023 1.023 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 24.653 4.811 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.348 5.348 3 C 0.001 3.999 4 C -0.113 4.113 5 H 0.048 0.952 6 C -0.146 4.146 7 C -0.162 4.162 8 C -0.148 4.148 9 C -0.187 4.187 10 C 0.053 3.947 11 H 0.100 0.900 12 O -0.399 6.399 13 C 0.292 3.708 14 O -0.471 6.471 15 C -0.153 4.153 16 C 0.005 3.995 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.801 3.199 22 H -0.174 1.174 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.240 0.760 39 H 0.120 0.880 40 H 0.120 0.880 41 H -0.003 1.003 42 H -0.004 1.004 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.915 23.981 4.741 26.380 hybrid contribution 0.917 -0.744 0.102 1.185 sum -8.998 23.238 4.843 25.385 Atomic orbital electron populations 1.22235 0.76903 1.04983 1.03427 1.48003 1.08517 1.04926 1.73306 1.21453 0.96982 0.84828 0.96686 1.21502 0.97005 0.96546 0.96251 0.95210 1.21689 0.94705 1.02319 0.95919 1.21597 1.00669 0.97558 0.96350 1.21476 0.94411 0.97842 1.01119 1.22244 0.99153 1.01390 0.95880 1.21855 0.84363 0.95886 0.92622 0.90026 1.86639 1.29371 1.42708 1.81198 1.21467 0.87700 0.87019 0.74616 1.90660 1.16906 1.88149 1.51347 1.21621 0.99168 0.90177 1.04348 1.18690 0.93703 0.92771 0.94341 1.21737 0.94019 0.91445 1.50741 0.90411 1.26196 0.95733 1.04132 0.94553 1.70204 1.08468 1.27772 1.51521 0.85223 0.79339 0.77794 0.77566 1.17364 1.20575 1.20597 0.91117 0.90374 0.87880 0.87446 0.93184 0.88879 0.91229 0.89805 0.94243 0.89770 0.91025 0.93918 0.89773 0.75976 0.87987 0.87985 1.00301 1.00422 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 9.31 127.77 1.19 2.45 16 2 N -0.61 -18.61 2.70 -846.75 -2.28 -20.89 16 3 C 0.12 3.38 4.82 86.38 0.42 3.80 16 4 C -0.09 -2.33 2.14 -10.79 -0.02 -2.36 16 5 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.11 -1.85 4.19 30.60 0.13 -1.72 16 7 C -0.12 -1.96 5.92 30.60 0.18 -1.77 16 8 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 9 C -0.15 -2.51 5.54 30.59 0.17 -2.34 16 10 C 0.11 2.23 2.90 30.59 0.09 2.32 16 11 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 12 O -0.59 -14.88 12.56 -148.98 -1.87 -16.76 16 13 C 0.50 21.60 7.67 87.65 0.67 22.28 16 14 O -0.59 -32.32 15.56 -3.04 -0.05 -32.37 16 15 C -0.11 -4.90 4.19 29.85 0.13 -4.78 16 16 C 0.04 2.51 4.26 29.85 0.13 2.63 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 18 H 0.08 4.13 7.74 -2.91 -0.02 4.11 16 19 C -0.01 -0.54 5.46 84.66 0.46 -0.07 16 20 N -0.94 -61.47 13.29 21.45 0.28 -61.19 16 21 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 22 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.50 6.44 -2.39 -0.02 1.49 16 27 H 0.10 1.29 5.98 -2.39 -0.01 1.27 16 28 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.05 1.81 6.82 -2.39 -0.02 1.80 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.25 5.89 -2.39 -0.01 1.24 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.39 5.79 9.08 -74.06 -0.67 5.12 16 39 H 0.10 3.87 7.40 -2.39 -0.02 3.85 16 40 H 0.10 3.88 8.11 -2.39 -0.02 3.86 16 41 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 42 H -0.02 -1.52 8.10 -2.39 -0.02 -1.53 16 43 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -85.94 337.87 2.37 -83.57 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.31 Total: 12.81 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 3.95 Total: -12.42 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.00 Total: -82.08 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.92 Total: -49.13 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -85.94 2.37 -83.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360783007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.242 kcal (2) G-P(sol) polarization free energy of solvation -85.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds