Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00235 * 2 1 4 4 C 1.52992 * 109.47658 * 270.00322 * 3 2 1 5 5 H 1.08998 * 109.46862 * 305.00512 * 4 3 2 6 6 C 1.53006 * 109.47223 * 64.99659 * 4 3 2 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 10 10 C 1.52997 * 109.47482 * 184.99947 * 4 3 2 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 4 3 12 12 O 1.42896 * 109.46906 * 300.00066 * 10 4 3 13 13 C 1.34773 * 119.99600 * 180.02562 * 2 1 3 14 14 O 1.21287 * 119.99774 * 179.97438 * 13 2 1 15 15 C 1.50697 * 120.00451 * 359.97438 * 13 2 1 16 16 C 1.52997 * 109.47394 * 180.02562 * 15 13 2 17 17 C 1.50697 * 109.47394 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00056 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00572 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99407 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47080 * 60.00324 * 21 19 17 23 23 H 1.48502 * 109.47059 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47497 * 300.00314 * 21 19 17 25 25 H 1.08997 * 109.47297 * 89.99347 * 1 2 3 26 26 H 1.08993 * 109.47142 * 209.99702 * 1 2 3 27 27 H 1.09004 * 109.46651 * 329.99608 * 1 2 3 28 28 H 1.09001 * 109.46952 * 149.99558 * 3 2 1 29 29 H 1.09004 * 109.46722 * 30.00638 * 3 2 1 30 30 H 1.09001 * 109.47002 * 60.00080 * 6 4 3 31 31 H 1.09000 * 109.47050 * 300.00346 * 6 4 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 34 34 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 35 35 H 1.09004 * 109.47006 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47368 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47372 * 59.99964 * 9 8 7 38 38 H 0.96703 * 114.00193 * 180.02562 * 12 10 4 39 39 H 1.09000 * 109.47336 * 299.99950 * 15 13 2 40 40 H 1.09001 * 109.46892 * 60.00071 * 15 13 2 41 41 H 1.09006 * 109.46964 * 299.99838 * 16 15 13 42 42 H 1.08995 * 109.47519 * 59.99509 * 16 15 13 43 43 H 0.97001 * 119.99355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 1 2.9642 0.9132 -1.9815 6 6 1.1180 2.0137 -2.1265 7 6 1.3730 2.4549 -3.5691 8 6 2.2445 3.7124 -3.5713 9 6 3.5790 3.4092 -2.8873 10 6 3.3239 2.9681 -1.4442 11 1 4.2747 2.7521 -0.9568 12 8 2.6531 4.0133 -0.7374 13 6 2.1388 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3853 -2.4723 -0.0005 16 6 2.3795 -3.6352 -0.0005 17 6 1.6260 -4.9403 -0.0012 18 1 0.5460 -4.9403 -0.0019 19 6 2.3153 -6.1344 -0.0018 20 7 3.6305 -6.1344 -0.0014 21 14 1.3813 -7.7521 -0.0019 22 1 0.5271 -7.8304 -1.2141 23 1 2.3463 -8.8809 -0.0020 24 1 0.5280 -7.8311 1.2109 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 3.1500 1.1383 0.5139 29 1 1.6085 2.0283 0.5140 30 1 0.6062 2.8110 -1.5873 31 1 0.4972 1.1177 -2.1252 32 1 0.4222 2.6713 -4.0563 33 1 1.8845 1.6574 -4.1080 34 1 1.7329 4.5099 -3.0325 35 1 2.4258 4.0270 -4.5991 36 1 4.2002 4.3049 -2.8893 37 1 4.0906 2.6117 -3.4262 38 1 3.1485 4.8429 -0.6987 39 1 0.7590 -2.5303 0.8897 40 1 0.7584 -2.5298 -0.8903 41 1 3.0062 -3.5775 -0.8906 42 1 3.0062 -3.5775 0.8893 43 1 4.1154 -6.9745 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360783009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = -115.328289 kcal Electronic energy + Delta-G solvation = -21402.088113 eV Core-core repulsion = 18253.071945 eV Total energy + Delta-G solvation = -3149.016168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99114 -38.77151 -35.57528 -34.87937 -33.47267 -31.89560 -30.62046 -30.06108 -27.14773 -26.20360 -24.53470 -22.75262 -21.95503 -20.84411 -19.82327 -18.40266 -17.04254 -16.81203 -16.11786 -15.83111 -15.55531 -14.98341 -14.64448 -14.40863 -14.24531 -13.70227 -13.40070 -13.06180 -12.92288 -12.41922 -12.33219 -12.15399 -12.10985 -12.00511 -11.80419 -11.57602 -11.09703 -11.03707 -10.89464 -10.73893 -10.59937 -10.55950 -10.16888 -9.90895 -9.83987 -9.57949 -9.13527 -8.92992 -8.32412 -8.26253 -5.93385 -3.97665 3.28247 3.36060 3.39070 3.41133 3.44091 4.11145 4.49191 4.56549 4.59034 4.70830 4.97743 5.10052 5.18427 5.26856 5.28569 5.37482 5.41327 5.42197 5.44078 5.55431 5.65179 5.70599 5.75662 5.84920 5.93340 5.95024 6.04354 6.11253 6.14297 6.26748 6.27869 6.28913 6.43189 6.85642 6.96194 7.49212 7.77017 7.82566 7.90183 8.10539 8.41985 8.81856 9.10833 9.65583 11.17588 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.003618 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.284100 B = 7736.923265 C = 7762.379294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.628 5.628 3 C 0.126 3.874 4 C -0.093 4.093 5 H 0.085 0.915 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.113 4.113 9 C -0.152 4.152 10 C 0.112 3.888 11 H 0.056 0.944 12 O -0.561 6.561 13 C 0.510 3.490 14 O -0.535 6.535 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.372 0.628 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 22.041 -4.437 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.363 5.363 3 C 0.003 3.997 4 C -0.113 4.113 5 H 0.103 0.897 6 C -0.148 4.148 7 C -0.158 4.158 8 C -0.150 4.150 9 C -0.189 4.189 10 C 0.053 3.947 11 H 0.074 0.926 12 O -0.367 6.367 13 C 0.300 3.700 14 O -0.410 6.410 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.219 0.781 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.028 21.427 -4.358 22.436 hybrid contribution -0.045 -0.456 -0.191 0.497 sum -5.073 20.970 -4.548 22.049 Atomic orbital electron populations 1.21823 0.80056 1.02898 1.01474 1.48051 1.06708 1.06010 1.75553 1.21333 0.97979 0.84851 0.95570 1.21585 0.96681 0.95320 0.97718 0.89719 1.21602 0.96806 1.01340 0.95096 1.21541 0.99507 0.97544 0.97200 1.21420 0.95615 0.98311 0.99693 1.22242 0.98004 1.01641 0.97052 1.21755 0.94698 0.87575 0.90691 0.92588 1.86510 1.49012 1.23731 1.77402 1.21570 0.88439 0.85599 0.74394 1.90650 1.14425 1.87343 1.48602 1.21876 1.00664 0.92080 1.02182 1.18894 0.93193 0.89411 0.98528 1.21195 0.92873 0.91060 1.51394 0.92696 1.25023 0.94819 0.99184 0.95333 1.69995 1.06052 1.26637 1.50198 0.86656 0.79547 0.83209 0.78533 1.20261 1.21299 1.20258 0.92837 0.90678 0.91687 0.90448 0.90459 0.91371 0.91558 0.92188 0.92193 0.91518 0.92535 0.91940 0.90993 0.78130 0.90351 0.90397 0.95918 0.95890 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.30 59.85 0.56 1.49 16 2 N -0.63 -9.61 2.70 -181.58 -0.49 -10.10 16 3 C 0.13 1.74 4.70 -4.05 -0.02 1.72 16 4 C -0.09 -1.16 2.23 -90.62 -0.20 -1.36 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 6 C -0.11 -1.22 4.63 -26.73 -0.12 -1.34 16 7 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 8 C -0.11 -0.99 5.78 -26.73 -0.15 -1.14 16 9 C -0.15 -1.34 5.64 -26.71 -0.15 -1.49 16 10 C 0.11 1.15 3.21 -26.71 -0.09 1.06 16 11 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 12 O -0.56 -5.17 11.39 -35.23 -0.40 -5.57 16 13 C 0.51 10.26 7.67 -10.99 -0.08 10.17 16 14 O -0.53 -12.91 15.56 5.55 0.09 -12.82 16 15 C -0.13 -2.69 4.19 -27.89 -0.12 -2.81 16 16 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 17 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.57 6.38 -51.93 -0.33 0.23 16 26 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 27 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 28 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 29 H 0.08 0.96 7.59 -51.93 -0.39 0.56 16 30 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 31 H 0.07 0.76 5.43 -51.93 -0.28 0.48 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.37 1.98 9.08 45.56 0.41 2.40 16 39 H 0.08 1.51 7.40 -51.93 -0.38 1.13 16 40 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.27 336.25 -7.76 -42.03 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.67 Total: -0.45 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.07 Total: -8.00 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.25 Total: -37.09 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.32 Total: -18.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.27 -7.76 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360783009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.296 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds