Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00235 * 2 1 4 4 C 1.52992 * 109.47658 * 270.00322 * 3 2 1 5 5 H 1.08998 * 109.46862 * 305.00512 * 4 3 2 6 6 C 1.53006 * 109.47223 * 64.99659 * 4 3 2 7 7 C 1.52997 * 109.47164 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46978 * 299.99874 * 7 6 4 9 9 C 1.52996 * 109.46891 * 60.00410 * 8 7 6 10 10 C 1.52997 * 109.47482 * 184.99947 * 4 3 2 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 4 3 12 12 O 1.42896 * 109.46906 * 300.00066 * 10 4 3 13 13 C 1.34773 * 119.99600 * 180.02562 * 2 1 3 14 14 O 1.21287 * 119.99774 * 179.97438 * 13 2 1 15 15 C 1.50697 * 120.00451 * 359.97438 * 13 2 1 16 16 C 1.52997 * 109.47394 * 180.02562 * 15 13 2 17 17 C 1.50697 * 109.47394 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00056 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00572 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99407 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47080 * 60.00324 * 21 19 17 23 23 H 1.48502 * 109.47059 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47497 * 300.00314 * 21 19 17 25 25 H 1.08997 * 109.47297 * 89.99347 * 1 2 3 26 26 H 1.08993 * 109.47142 * 209.99702 * 1 2 3 27 27 H 1.09004 * 109.46651 * 329.99608 * 1 2 3 28 28 H 1.09001 * 109.46952 * 149.99558 * 3 2 1 29 29 H 1.09004 * 109.46722 * 30.00638 * 3 2 1 30 30 H 1.09001 * 109.47002 * 60.00080 * 6 4 3 31 31 H 1.09000 * 109.47050 * 300.00346 * 6 4 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 7 6 4 34 34 H 1.08992 * 109.47056 * 300.00064 * 8 7 6 35 35 H 1.09004 * 109.47006 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.47368 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47372 * 59.99964 * 9 8 7 38 38 H 0.96703 * 114.00193 * 180.02562 * 12 10 4 39 39 H 1.09000 * 109.47336 * 299.99950 * 15 13 2 40 40 H 1.09001 * 109.46892 * 60.00071 * 15 13 2 41 41 H 1.09006 * 109.46964 * 299.99838 * 16 15 13 42 42 H 1.08995 * 109.47519 * 59.99509 * 16 15 13 43 43 H 0.97001 * 119.99355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 1 2.9642 0.9132 -1.9815 6 6 1.1180 2.0137 -2.1265 7 6 1.3730 2.4549 -3.5691 8 6 2.2445 3.7124 -3.5713 9 6 3.5790 3.4092 -2.8873 10 6 3.3239 2.9681 -1.4442 11 1 4.2747 2.7521 -0.9568 12 8 2.6531 4.0133 -0.7374 13 6 2.1388 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3853 -2.4723 -0.0005 16 6 2.3795 -3.6352 -0.0005 17 6 1.6260 -4.9403 -0.0012 18 1 0.5460 -4.9403 -0.0019 19 6 2.3153 -6.1344 -0.0018 20 7 3.6305 -6.1344 -0.0014 21 14 1.3813 -7.7521 -0.0019 22 1 0.5271 -7.8304 -1.2141 23 1 2.3463 -8.8809 -0.0020 24 1 0.5280 -7.8311 1.2109 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 3.1500 1.1383 0.5139 29 1 1.6085 2.0283 0.5140 30 1 0.6062 2.8110 -1.5873 31 1 0.4972 1.1177 -2.1252 32 1 0.4222 2.6713 -4.0563 33 1 1.8845 1.6574 -4.1080 34 1 1.7329 4.5099 -3.0325 35 1 2.4258 4.0270 -4.5991 36 1 4.2002 4.3049 -2.8893 37 1 4.0906 2.6117 -3.4262 38 1 3.1485 4.8429 -0.6987 39 1 0.7590 -2.5303 0.8897 40 1 0.7584 -2.5298 -0.8903 41 1 3.0062 -3.5775 -0.8906 42 1 3.0062 -3.5775 0.8893 43 1 4.1154 -6.9745 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360783009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = -139.117316 kcal Electronic energy + Delta-G solvation = -21403.119682 eV Core-core repulsion = 18253.071945 eV Total energy + Delta-G solvation = -3150.047738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20433 -39.94092 -36.79162 -35.77335 -35.59464 -33.36859 -32.20995 -30.86290 -28.29428 -27.90420 -26.01927 -23.72630 -23.34348 -22.18867 -20.68496 -19.91176 -18.75777 -17.80198 -17.49648 -17.15292 -16.94134 -16.44106 -16.19610 -15.59752 -15.12678 -14.84116 -14.67661 -14.34658 -14.14737 -13.99047 -13.70043 -13.36682 -13.28593 -13.09316 -12.97671 -12.80398 -12.70267 -12.49004 -12.38622 -11.91604 -11.90231 -11.67885 -11.55794 -11.42083 -11.32372 -11.02477 -10.64381 -10.61094 -10.55933 -9.55816 -8.17831 -6.32352 1.41938 1.46851 1.54548 1.69788 2.11407 2.43765 3.14875 3.35594 3.71863 3.73679 3.81438 3.95374 4.16276 4.26499 4.32694 4.37999 4.44677 4.47394 4.52188 4.52900 4.58552 4.64703 4.72861 4.82440 4.91762 4.95042 5.02810 5.07631 5.12876 5.24749 5.26541 5.30433 5.41672 5.47962 5.56866 5.61806 5.69049 5.84715 6.17297 6.42258 6.85748 6.94525 7.28527 7.38052 8.94818 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.003618 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.284100 B = 7736.923265 C = 7762.379294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.614 5.614 3 C 0.127 3.873 4 C -0.092 4.092 5 H 0.050 0.950 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.149 4.149 10 C 0.118 3.882 11 H 0.046 0.954 12 O -0.566 6.566 13 C 0.506 3.494 14 O -0.590 6.590 15 C -0.115 4.115 16 C 0.044 3.956 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.392 0.608 39 H 0.102 0.898 40 H 0.100 0.900 41 H -0.020 1.020 42 H -0.020 1.020 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 23.311 -4.725 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C 0.004 3.996 4 C -0.112 4.112 5 H 0.068 0.932 6 C -0.141 4.141 7 C -0.160 4.160 8 C -0.146 4.146 9 C -0.187 4.187 10 C 0.059 3.941 11 H 0.064 0.936 12 O -0.374 6.374 13 C 0.296 3.704 14 O -0.471 6.471 15 C -0.155 4.155 16 C 0.006 3.994 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.213 1.213 24 H -0.186 1.186 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.120 0.880 40 H 0.118 0.882 41 H -0.002 1.002 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.077 22.762 -4.647 24.596 hybrid contribution 0.894 -0.752 -0.084 1.171 sum -7.183 22.009 -4.730 23.630 Atomic orbital electron populations 1.22169 0.77093 1.04712 1.03126 1.48009 1.08502 1.05000 1.73169 1.21441 0.97051 0.84381 0.96686 1.21488 0.97901 0.95540 0.96271 0.93189 1.21544 0.95474 1.01366 0.95735 1.21563 1.00348 0.97747 0.96324 1.21403 0.95033 0.97751 1.00427 1.22224 0.98619 1.02092 0.95763 1.21543 0.93625 0.87193 0.91780 0.93625 1.86444 1.49328 1.24442 1.77176 1.21404 0.87695 0.86825 0.74466 1.90629 1.16661 1.88164 1.51600 1.21633 0.99249 0.90257 1.04329 1.18676 0.93667 0.92558 0.94484 1.21683 0.93989 0.91566 1.50974 0.90570 1.26158 0.95724 1.03993 0.94545 1.70185 1.08373 1.27875 1.51391 0.85355 0.78045 0.77206 0.79524 1.18621 1.21311 1.18621 0.91201 0.90194 0.88656 0.93155 0.88010 0.90444 0.92078 0.90830 0.93632 0.90772 0.91443 0.89752 0.92339 0.75887 0.87955 0.88166 1.00197 1.00130 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 9.30 127.77 1.19 2.61 16 2 N -0.61 -18.39 2.70 -846.77 -2.28 -20.68 16 3 C 0.13 3.47 4.70 86.38 0.41 3.87 16 4 C -0.09 -2.29 2.23 -10.79 -0.02 -2.31 16 5 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.10 -2.10 4.63 30.60 0.14 -1.96 16 7 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 8 C -0.11 -1.66 5.78 30.59 0.18 -1.48 16 9 C -0.15 -2.45 5.64 30.61 0.17 -2.28 16 10 C 0.12 2.33 3.21 30.61 0.10 2.43 16 11 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 12 O -0.57 -9.10 11.39 -148.98 -1.70 -10.80 16 13 C 0.51 20.95 7.67 87.66 0.67 21.63 16 14 O -0.59 -30.48 15.56 -3.05 -0.05 -30.53 16 15 C -0.12 -4.86 4.19 29.85 0.13 -4.73 16 16 C 0.04 2.52 4.26 29.85 0.13 2.65 16 17 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 20 N -0.94 -60.50 13.29 21.45 0.28 -60.21 16 21 Si 0.98 44.74 29.54 68.60 2.03 46.77 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H 0.07 1.25 6.38 -2.39 -0.02 1.23 16 26 H 0.08 1.58 6.44 -2.39 -0.02 1.57 16 27 H 0.09 1.41 7.89 -2.38 -0.02 1.39 16 28 H 0.05 1.66 7.42 -2.39 -0.02 1.64 16 29 H 0.10 2.30 7.59 -2.39 -0.02 2.28 16 30 H 0.08 1.45 7.68 -2.39 -0.02 1.43 16 31 H 0.06 1.28 5.43 -2.39 -0.01 1.27 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.05 7.68 -2.39 -0.02 1.03 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.39 3.09 9.08 -74.05 -0.67 2.41 16 39 H 0.10 3.81 7.40 -2.39 -0.02 3.79 16 40 H 0.10 3.76 8.11 -2.39 -0.02 3.74 16 41 H -0.02 -1.33 8.10 -2.38 -0.02 -1.35 16 42 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -78.67 336.25 2.55 -76.12 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.31 Total: 12.23 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.96 Total: -12.89 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.00 Total: -80.89 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.75 Total: -41.33 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.67 2.55 -76.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360783009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.997 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds