Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47112 * 2 1 4 4 C 1.37095 * 119.99798 * 96.87795 * 3 2 1 5 5 H 1.08008 * 120.00187 * 167.01875 * 4 3 2 6 6 C 1.38945 * 120.00163 * 347.01222 * 4 3 2 7 7 N 1.31409 * 120.00440 * 334.78750 * 6 4 3 8 8 Si 1.86808 * 119.99958 * 154.77808 * 6 4 3 9 9 H 1.48499 * 109.46870 * 94.99069 * 8 6 4 10 10 H 1.48500 * 109.47155 * 214.99079 * 8 6 4 11 11 H 1.48500 * 109.46911 * 334.99353 * 8 6 4 12 12 C 1.34776 * 120.00321 * 276.87846 * 3 2 1 13 13 O 1.21292 * 119.99774 * 355.04852 * 12 3 2 14 14 C 1.50689 * 120.00307 * 175.05240 * 12 3 2 15 15 C 1.53000 * 109.47737 * 67.83992 * 14 12 3 16 16 C 1.53001 * 109.47150 * 307.83549 * 14 12 3 17 17 C 1.53007 * 109.47253 * 187.83965 * 14 12 3 18 18 C 1.53181 * 109.61633 * 60.22073 * 17 14 12 19 19 C 1.53091 * 109.16354 * 176.89232 * 18 17 14 20 20 O 1.42911 * 109.41274 * 302.39143 * 19 18 17 21 21 C 1.42898 * 114.09630 * 61.15967 * 20 19 18 22 22 C 1.53091 * 109.41619 * 298.83851 * 21 20 19 23 23 H 1.09004 * 109.47617 * 186.27689 * 1 2 3 24 24 H 1.09001 * 109.47452 * 306.27290 * 1 2 3 25 25 H 1.09000 * 109.47861 * 66.27430 * 1 2 3 26 26 H 1.09004 * 109.46772 * 239.99898 * 2 1 3 27 27 H 1.09001 * 109.46855 * 120.00293 * 2 1 3 28 28 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47591 * 192.60746 * 15 14 12 30 30 H 1.09007 * 109.46539 * 312.60884 * 15 14 12 31 31 H 1.09002 * 109.47104 * 72.60113 * 15 14 12 32 32 H 1.08994 * 109.47514 * 304.99694 * 16 14 12 33 33 H 1.09005 * 109.46921 * 64.99780 * 16 14 12 34 34 H 1.09004 * 109.47438 * 184.99197 * 16 14 12 35 35 H 1.08999 * 109.54055 * 299.99975 * 17 14 12 36 36 H 1.09001 * 109.51950 * 296.79619 * 18 17 14 37 37 H 1.09003 * 109.52237 * 56.98646 * 18 17 14 38 38 H 1.08997 * 109.48136 * 182.41146 * 19 18 17 39 39 H 1.09005 * 109.47987 * 62.36965 * 19 18 17 40 40 H 1.09004 * 109.48149 * 178.85890 * 21 20 19 41 41 H 1.09004 * 109.49262 * 58.82948 * 21 20 19 42 42 H 1.09004 * 109.52153 * 297.70374 * 22 21 20 43 43 H 1.08999 * 109.52524 * 177.51917 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3808 1.9800 1.1788 5 1 2.9320 2.9088 1.1655 6 6 2.0391 1.3922 2.3905 7 7 1.0001 0.5909 2.4623 8 14 3.0569 1.7409 3.9177 9 1 2.4346 2.8497 4.6847 10 1 3.1116 0.5225 4.7649 11 1 4.4336 2.1277 3.5172 12 6 2.1111 2.0632 -1.1588 13 8 1.8766 1.5065 -2.2105 14 6 2.5064 3.5173 -1.1477 15 6 3.9649 3.6461 -0.7037 16 6 1.6075 4.2827 -0.1746 17 6 2.3481 4.0996 -2.5537 18 6 0.8877 3.9774 -2.9995 19 6 0.7253 4.6322 -4.3738 20 8 1.1408 5.9976 -4.3014 21 6 2.5111 6.1718 -3.9353 22 6 2.7452 5.5789 -2.5434 23 1 -0.3634 -1.0215 0.1124 24 1 -0.3634 0.6080 0.8285 25 1 -0.3635 0.4135 -0.9408 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7618 0.1803 3.3082 29 1 4.1857 4.6897 -0.4797 30 1 4.1279 3.0407 0.1881 31 1 4.6200 3.2994 -1.5029 32 1 0.5629 4.1184 -0.4389 33 1 1.7857 3.9277 0.8405 34 1 1.8336 5.3475 -0.2319 35 1 2.9880 3.5550 -3.2480 36 1 0.6131 2.9245 -3.0630 37 1 0.2434 4.4801 -2.2781 38 1 -0.3206 4.5862 -4.6770 39 1 1.3392 4.1036 -5.1031 40 1 2.7517 7.2349 -3.9226 41 1 3.1484 5.6635 -4.6589 42 1 2.1385 6.1139 -1.8128 43 1 3.7990 5.6714 -2.2806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361640964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -73.383701 kcal Electronic energy + Delta-G solvation = -23010.576574 eV Core-core repulsion = 19863.379260 eV Total energy + Delta-G solvation = -3147.197314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04325 -38.34554 -35.59530 -34.85868 -31.71883 -31.29383 -30.77025 -29.13779 -26.66902 -25.24762 -24.45824 -23.44682 -22.49901 -21.00514 -19.38404 -18.33830 -17.15124 -15.83042 -15.65553 -15.47952 -14.57629 -14.51038 -14.36708 -14.02319 -13.80742 -13.30944 -13.12469 -12.83119 -12.39304 -12.29117 -11.90419 -11.77455 -11.47853 -11.35856 -11.29830 -11.13360 -11.02937 -10.80335 -10.60799 -10.50363 -10.38869 -10.23013 -10.03439 -9.79399 -9.65135 -9.39215 -9.10900 -8.89670 -8.09378 -7.72340 -6.40544 -3.86081 3.06191 3.18926 3.21513 3.92417 4.05633 4.13416 4.72447 4.98210 5.14266 5.23603 5.25063 5.37697 5.53590 5.69198 5.74809 5.80890 5.87879 5.91994 5.99876 6.15397 6.23396 6.31090 6.36508 6.43249 6.47221 6.57163 6.61450 6.70841 6.74918 6.79669 6.83717 6.91141 6.97157 7.06628 7.22025 7.34369 7.41297 7.46480 7.76413 7.80542 8.42982 9.07117 9.57486 9.98288 10.58236 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.006605 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.161849 B = 4238.346324 C = 4868.814558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.138 3.862 3 N -0.437 5.437 4 C -0.345 4.345 5 H 0.119 0.881 6 C 0.037 3.963 7 N -0.851 5.851 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.466 3.534 13 O -0.610 6.610 14 C -0.054 4.054 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.155 4.155 19 C 0.063 3.937 20 O -0.391 6.391 21 C 0.063 3.937 22 C -0.155 4.155 23 H 0.032 0.968 24 H 0.091 0.909 25 H 0.023 0.977 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.267 0.733 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 6.746 -4.659 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 N -0.154 5.154 4 C -0.471 4.471 5 H 0.136 0.864 6 C -0.168 4.168 7 N -0.488 5.488 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.255 3.745 13 O -0.497 6.497 14 C -0.057 4.057 15 C -0.208 4.208 16 C -0.212 4.212 17 C -0.075 4.075 18 C -0.193 4.193 19 C -0.013 4.013 20 O -0.310 6.310 21 C -0.014 4.014 22 C -0.192 4.192 23 H 0.051 0.949 24 H 0.109 0.891 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.238 6.460 -5.019 8.481 hybrid contribution 0.587 -0.183 1.045 1.213 sum 2.825 6.277 -3.974 7.948 Atomic orbital electron populations 1.22009 0.96785 1.00166 1.01058 1.21024 0.94384 0.83467 0.99634 1.43746 1.55128 1.10924 1.05586 1.20036 1.34613 1.09779 0.82703 0.86443 1.25205 0.95391 0.97238 0.98987 1.70153 1.21331 1.30796 1.26548 0.86272 0.80801 0.78112 0.81698 1.20454 1.20734 1.19353 1.19923 0.82943 0.87880 0.83797 1.90454 1.57482 1.70486 1.31327 1.20337 0.96393 0.93928 0.95056 1.22079 0.94531 1.01578 1.02637 1.22278 0.98736 0.97885 1.02290 1.20875 0.96693 0.93759 0.96189 1.22401 0.97074 1.03458 0.96345 1.22606 0.99682 0.81937 0.97104 1.87855 1.26992 1.26310 1.89816 1.22530 0.83173 1.00486 0.95180 1.22386 1.01961 0.97126 0.97749 0.94917 0.89084 0.95758 0.94541 0.89890 0.92241 0.92963 0.89725 0.93507 0.93242 0.88376 0.93712 0.91330 0.88465 0.91666 0.89544 0.93621 0.89593 0.93728 0.90705 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.57 37.16 0.36 -2.93 16 2 C 0.14 3.33 5.27 -4.05 -0.02 3.31 16 3 N -0.44 -10.56 2.64 -114.82 -0.30 -10.87 16 4 C -0.34 -8.11 6.52 -14.94 -0.10 -8.21 16 5 H 0.12 2.60 3.34 -52.48 -0.18 2.42 16 6 C 0.04 0.88 4.82 -17.47 -0.08 0.79 16 7 N -0.85 -20.82 8.73 55.50 0.48 -20.33 16 8 Si 0.90 18.48 29.62 -169.99 -5.04 13.44 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 C 0.47 10.85 6.00 -10.99 -0.07 10.78 16 13 O -0.61 -15.49 13.68 5.55 0.08 -15.41 16 14 C -0.05 -1.03 0.30 -155.66 -0.05 -1.08 16 15 C -0.15 -2.63 7.41 37.16 0.28 -2.36 16 16 C -0.16 -2.89 7.26 37.16 0.27 -2.62 16 17 C -0.06 -0.98 1.21 -90.43 -0.11 -1.09 16 18 C -0.16 -2.74 4.78 -26.59 -0.13 -2.87 16 19 C 0.06 0.96 6.84 37.20 0.25 1.22 16 20 O -0.39 -6.08 10.77 -35.23 -0.38 -6.46 16 21 C 0.06 0.84 6.84 37.20 0.25 1.09 16 22 C -0.15 -2.21 4.73 -26.59 -0.13 -2.34 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.09 2.27 6.24 -51.93 -0.32 1.94 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 27 H 0.08 2.06 6.15 -51.93 -0.32 1.74 16 28 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 29 H 0.05 0.78 7.18 -51.93 -0.37 0.40 16 30 H 0.08 1.61 5.20 -51.92 -0.27 1.34 16 31 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.05 0.97 6.65 -51.93 -0.35 0.63 16 33 H 0.10 1.99 4.61 -51.93 -0.24 1.75 16 34 H 0.04 0.72 6.11 -51.93 -0.32 0.40 16 35 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16 36 H 0.10 1.99 5.93 -51.93 -0.31 1.68 16 37 H 0.06 1.17 6.40 -51.93 -0.33 0.84 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.09 6.18 -51.93 -0.32 0.77 16 43 H 0.07 0.91 6.92 -51.93 -0.36 0.55 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -26.49 310.04 -6.34 -32.83 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.58 Total: 8.42 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.73 Total: -6.29 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.18 Total: -31.20 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.30 Total: -21.87 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.04 Total: 13.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.49 -6.34 -32.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361640964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.556 kcal (2) G-P(sol) polarization free energy of solvation -26.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds