Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47112 * 2 1 4 4 C 1.37095 * 119.99798 * 96.87795 * 3 2 1 5 5 H 1.08008 * 120.00187 * 167.01875 * 4 3 2 6 6 C 1.38945 * 120.00163 * 347.01222 * 4 3 2 7 7 N 1.31409 * 120.00440 * 334.78750 * 6 4 3 8 8 Si 1.86808 * 119.99958 * 154.77808 * 6 4 3 9 9 H 1.48499 * 109.46870 * 94.99069 * 8 6 4 10 10 H 1.48500 * 109.47155 * 214.99079 * 8 6 4 11 11 H 1.48500 * 109.46911 * 334.99353 * 8 6 4 12 12 C 1.34776 * 120.00321 * 276.87846 * 3 2 1 13 13 O 1.21292 * 119.99774 * 355.04852 * 12 3 2 14 14 C 1.50689 * 120.00307 * 175.05240 * 12 3 2 15 15 C 1.53000 * 109.47737 * 67.83992 * 14 12 3 16 16 C 1.53001 * 109.47150 * 307.83549 * 14 12 3 17 17 C 1.53007 * 109.47253 * 187.83965 * 14 12 3 18 18 C 1.53181 * 109.61633 * 60.22073 * 17 14 12 19 19 C 1.53091 * 109.16354 * 176.89232 * 18 17 14 20 20 O 1.42911 * 109.41274 * 302.39143 * 19 18 17 21 21 C 1.42898 * 114.09630 * 61.15967 * 20 19 18 22 22 C 1.53091 * 109.41619 * 298.83851 * 21 20 19 23 23 H 1.09004 * 109.47617 * 186.27689 * 1 2 3 24 24 H 1.09001 * 109.47452 * 306.27290 * 1 2 3 25 25 H 1.09000 * 109.47861 * 66.27430 * 1 2 3 26 26 H 1.09004 * 109.46772 * 239.99898 * 2 1 3 27 27 H 1.09001 * 109.46855 * 120.00293 * 2 1 3 28 28 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47591 * 192.60746 * 15 14 12 30 30 H 1.09007 * 109.46539 * 312.60884 * 15 14 12 31 31 H 1.09002 * 109.47104 * 72.60113 * 15 14 12 32 32 H 1.08994 * 109.47514 * 304.99694 * 16 14 12 33 33 H 1.09005 * 109.46921 * 64.99780 * 16 14 12 34 34 H 1.09004 * 109.47438 * 184.99197 * 16 14 12 35 35 H 1.08999 * 109.54055 * 299.99975 * 17 14 12 36 36 H 1.09001 * 109.51950 * 296.79619 * 18 17 14 37 37 H 1.09003 * 109.52237 * 56.98646 * 18 17 14 38 38 H 1.08997 * 109.48136 * 182.41146 * 19 18 17 39 39 H 1.09005 * 109.47987 * 62.36965 * 19 18 17 40 40 H 1.09004 * 109.48149 * 178.85890 * 21 20 19 41 41 H 1.09004 * 109.49262 * 58.82948 * 21 20 19 42 42 H 1.09004 * 109.52153 * 297.70374 * 22 21 20 43 43 H 1.08999 * 109.52524 * 177.51917 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3808 1.9800 1.1788 5 1 2.9320 2.9088 1.1655 6 6 2.0391 1.3922 2.3905 7 7 1.0001 0.5909 2.4623 8 14 3.0569 1.7409 3.9177 9 1 2.4346 2.8497 4.6847 10 1 3.1116 0.5225 4.7649 11 1 4.4336 2.1277 3.5172 12 6 2.1111 2.0632 -1.1588 13 8 1.8766 1.5065 -2.2105 14 6 2.5064 3.5173 -1.1477 15 6 3.9649 3.6461 -0.7037 16 6 1.6075 4.2827 -0.1746 17 6 2.3481 4.0996 -2.5537 18 6 0.8877 3.9774 -2.9995 19 6 0.7253 4.6322 -4.3738 20 8 1.1408 5.9976 -4.3014 21 6 2.5111 6.1718 -3.9353 22 6 2.7452 5.5789 -2.5434 23 1 -0.3634 -1.0215 0.1124 24 1 -0.3634 0.6080 0.8285 25 1 -0.3635 0.4135 -0.9408 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7618 0.1803 3.3082 29 1 4.1857 4.6897 -0.4797 30 1 4.1279 3.0407 0.1881 31 1 4.6200 3.2994 -1.5029 32 1 0.5629 4.1184 -0.4389 33 1 1.7857 3.9277 0.8405 34 1 1.8336 5.3475 -0.2319 35 1 2.9880 3.5550 -3.2480 36 1 0.6131 2.9245 -3.0630 37 1 0.2434 4.4801 -2.2781 38 1 -0.3206 4.5862 -4.6770 39 1 1.3392 4.1036 -5.1031 40 1 2.7517 7.2349 -3.9226 41 1 3.1484 5.6635 -4.6589 42 1 2.1385 6.1139 -1.8128 43 1 3.7990 5.6714 -2.2806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361640964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -87.924133 kcal Electronic energy + Delta-G solvation = -23011.207095 eV Core-core repulsion = 19863.379260 eV Total energy + Delta-G solvation = -3147.827835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58970 -39.79595 -37.18576 -36.63639 -33.46897 -32.88348 -31.97153 -30.89170 -28.12508 -26.98636 -25.87537 -24.88721 -24.06803 -22.55867 -20.98708 -19.94454 -18.86284 -17.36311 -16.93042 -16.85979 -16.21982 -16.06096 -15.90215 -15.68250 -15.23397 -14.86069 -14.63037 -14.31754 -14.17678 -13.91482 -13.43403 -13.22502 -12.97002 -12.90941 -12.80668 -12.76254 -12.58749 -12.45080 -12.22094 -12.09976 -11.78872 -11.70647 -11.55068 -11.37809 -11.18688 -10.90281 -10.73504 -10.38816 -9.87928 -9.59932 -8.21345 -5.71861 1.43514 1.52908 1.62019 2.13167 2.34909 3.01016 3.05567 3.18436 3.78690 3.91942 3.95532 4.18340 4.29031 4.34653 4.40153 4.45197 4.48669 4.56565 4.72074 4.79939 4.81669 4.87341 4.91652 4.92572 4.94819 5.03315 5.06425 5.11336 5.17261 5.18952 5.24724 5.36733 5.39054 5.42723 5.51544 5.64906 5.74889 5.86408 5.95834 6.31138 6.57291 7.23472 7.73572 8.14585 8.78410 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.006605 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.161849 B = 4238.346324 C = 4868.814558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.139 3.861 3 N -0.449 5.449 4 C -0.355 4.355 5 H 0.134 0.866 6 C -0.003 4.003 7 N -0.877 5.877 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.261 1.261 12 C 0.452 3.548 13 O -0.639 6.639 14 C -0.052 4.052 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.054 4.054 18 C -0.152 4.152 19 C 0.069 3.931 20 O -0.400 6.400 21 C 0.058 3.942 22 C -0.147 4.147 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.012 0.988 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.267 0.733 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 8.969 -4.464 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.015 3.985 3 N -0.166 5.166 4 C -0.481 4.481 5 H 0.151 0.849 6 C -0.206 4.206 7 N -0.515 5.515 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.185 1.185 12 C 0.242 3.758 13 O -0.528 6.528 14 C -0.055 4.055 15 C -0.203 4.203 16 C -0.202 4.202 17 C -0.073 4.073 18 C -0.190 4.190 19 C -0.007 4.007 20 O -0.319 6.319 21 C -0.018 4.018 22 C -0.184 4.184 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.575 8.696 -4.824 10.568 hybrid contribution 0.139 -0.921 0.947 1.328 sum 3.714 7.775 -3.877 9.449 Atomic orbital electron populations 1.21826 0.96184 1.00849 0.99515 1.20947 0.94835 0.84081 0.98589 1.43983 1.55306 1.10890 1.06374 1.20434 1.34717 1.10459 0.82532 0.84936 1.25961 0.95964 0.97236 1.01430 1.70246 1.22337 1.31782 1.27153 0.85281 0.79594 0.77543 0.78198 1.20113 1.21370 1.18478 1.20783 0.82271 0.89657 0.83041 1.90429 1.58539 1.71612 1.32250 1.20378 0.97617 0.90906 0.96569 1.22034 0.93017 1.03407 1.01842 1.22171 0.97467 0.99655 1.00933 1.20847 0.96034 0.95936 0.94450 1.22290 0.97409 1.01342 0.97916 1.22532 1.00696 0.82030 0.95472 1.87851 1.28431 1.25797 1.89841 1.22757 0.82179 1.02336 0.94544 1.22352 1.03176 0.94216 0.98688 0.93076 0.90753 0.96911 0.95473 0.90735 0.92297 0.89596 0.91432 0.93191 0.95189 0.89960 0.90532 0.92823 0.92031 0.92333 0.88329 0.93278 0.86690 0.92947 0.90580 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 9.57 71.98 0.69 -5.27 16 2 C 0.14 6.90 5.27 86.38 0.46 7.36 16 3 N -0.45 -22.10 2.64 -635.56 -1.68 -23.78 16 4 C -0.36 -16.69 6.52 84.04 0.55 -16.15 16 5 H 0.13 5.73 3.34 -2.91 -0.01 5.72 16 6 C 0.00 -0.15 4.82 84.93 0.41 0.26 16 7 N -0.88 -43.35 8.73 21.66 0.19 -43.16 16 8 Si 0.97 37.40 29.62 68.60 2.03 39.43 16 9 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 12 C 0.45 21.42 6.00 87.65 0.53 21.95 16 13 O -0.64 -33.51 13.68 -3.07 -0.04 -33.55 16 14 C -0.05 -1.93 0.30 -52.93 -0.02 -1.95 16 15 C -0.15 -4.76 7.41 71.98 0.53 -4.23 16 16 C -0.15 -5.25 7.26 71.98 0.52 -4.72 16 17 C -0.05 -1.80 1.21 -10.67 -0.01 -1.81 16 18 C -0.15 -5.36 4.78 30.69 0.15 -5.22 16 19 C 0.07 2.04 6.84 72.01 0.49 2.53 16 20 O -0.40 -11.43 10.77 -148.98 -1.60 -13.03 16 21 C 0.06 1.34 6.84 72.01 0.49 1.83 16 22 C -0.15 -3.70 4.73 30.68 0.15 -3.56 16 23 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.07 3.80 6.24 -2.39 -0.01 3.79 16 25 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 27 H 0.07 3.80 6.15 -2.39 -0.01 3.78 16 28 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 29 H 0.09 2.21 7.18 -2.39 -0.02 2.19 16 30 H 0.07 2.46 5.20 -2.38 -0.01 2.44 16 31 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.03 1.17 6.65 -2.39 -0.02 1.15 16 33 H 0.08 3.25 4.61 -2.38 -0.01 3.24 16 34 H 0.08 2.24 6.11 -2.38 -0.01 2.23 16 35 H 0.05 1.95 8.02 -2.39 -0.02 1.93 16 36 H 0.06 2.62 5.93 -2.39 -0.01 2.60 16 37 H 0.06 2.10 6.40 -2.39 -0.02 2.09 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.39 16 40 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.92 6.18 -2.39 -0.01 1.91 16 43 H 0.09 1.95 6.92 -2.39 -0.02 1.94 16 Total: -1.00 -57.58 310.04 4.84 -52.75 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 1.01 Total: 30.31 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.93 Total: -8.96 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -1.49 Total: -66.95 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.65 Total: -46.58 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -57.58 4.84 -52.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361640964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.176 kcal (2) G-P(sol) polarization free energy of solvation -57.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds