Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 120.00385 * 2 1 4 4 O 1.21279 * 120.00469 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99653 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47055 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47287 * 179.97438 * 6 5 3 8 8 H 1.08006 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00347 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99796 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46720 * 60.00820 * 11 9 7 13 13 H 1.48496 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47496 * 300.01111 * 11 9 7 15 15 C 1.46506 * 119.99554 * 179.97438 * 2 1 3 16 16 C 1.52995 * 109.47175 * 359.19616 * 15 2 1 17 17 C 1.52998 * 109.47135 * 299.99795 * 16 15 2 18 18 C 1.53006 * 109.47122 * 300.00006 * 17 16 15 19 19 C 1.52998 * 109.47122 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.47121 * 175.00592 * 19 18 17 21 21 C 1.53003 * 109.46779 * 60.00270 * 18 17 16 22 22 C 1.52998 * 109.47073 * 299.99760 * 21 18 17 23 23 H 1.08997 * 109.47449 * 275.92127 * 1 2 3 24 24 H 1.09008 * 109.46691 * 35.91915 * 1 2 3 25 25 H 1.09003 * 109.47230 * 155.91552 * 1 2 3 26 26 H 1.08992 * 109.47155 * 299.99776 * 5 3 2 27 27 H 1.09005 * 109.47309 * 59.99901 * 5 3 2 28 28 H 1.09005 * 109.47199 * 300.00278 * 6 5 3 29 29 H 1.09005 * 109.46970 * 59.99905 * 6 5 3 30 30 H 0.96998 * 120.00359 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46632 * 119.19749 * 15 2 1 32 32 H 1.08996 * 109.46991 * 179.97438 * 16 15 2 33 33 H 1.09000 * 109.47482 * 60.00174 * 16 15 2 34 34 H 1.08995 * 109.47042 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47120 * 60.00154 * 17 16 15 36 36 H 1.08996 * 109.47244 * 300.00073 * 18 17 16 37 37 H 1.09000 * 109.47223 * 295.00425 * 19 18 17 38 38 H 1.08997 * 109.47265 * 54.99944 * 19 18 17 39 39 H 0.96697 * 114.00365 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47394 * 59.99894 * 21 18 17 41 41 H 1.08998 * 109.46863 * 180.02562 * 21 18 17 42 42 H 1.09005 * 109.47242 * 300.00585 * 22 21 18 43 43 H 1.09003 * 109.47242 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 1.6263 4.9403 -0.0010 8 1 0.5463 4.9403 -0.0018 9 6 2.3157 6.1343 -0.0001 10 7 3.6308 6.1343 0.0014 11 14 1.3818 7.7521 -0.0023 12 1 0.5259 7.8311 1.2087 13 1 2.3468 8.8807 -0.0014 14 1 0.5301 7.8304 -1.2163 15 6 2.1975 -1.2688 0.0006 16 6 1.2033 -2.4316 0.0213 17 6 0.3390 -2.3411 1.2805 18 6 1.2338 -2.4130 2.5196 19 6 0.3694 -2.3232 3.7788 20 8 1.1902 -2.5067 4.9340 21 6 2.2279 -1.2501 2.4988 22 6 3.0923 -1.3406 1.2396 23 1 -0.3634 0.1060 1.0221 24 1 -0.3633 0.8323 -0.6029 25 1 -0.3634 -0.9382 -0.4194 26 1 0.7592 2.5298 -0.8908 27 1 0.7584 2.5302 0.8892 28 1 3.0058 3.5774 0.8907 29 1 3.0071 3.5774 -0.8893 30 1 4.1159 6.9743 0.0017 31 1 2.8133 -1.3332 -0.8965 32 1 1.7483 -3.3755 0.0213 33 1 0.5659 -2.3805 -0.8614 34 1 -0.3689 -3.1697 1.2955 35 1 -0.2059 -1.3972 1.2801 36 1 1.7787 -3.3570 2.5200 37 1 -0.1070 -1.3438 3.8234 38 1 -0.3962 -3.0985 3.7500 39 1 0.7073 -2.4625 5.7707 40 1 1.6830 -0.3062 2.4984 41 1 2.8657 -1.3016 3.3812 42 1 3.6372 -2.2846 1.2399 43 1 3.8008 -0.5124 1.2250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362900139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -94.141911 kcal Electronic energy + Delta-G solvation = -21754.924741 eV Core-core repulsion = 18606.827283 eV Total energy + Delta-G solvation = -3148.097458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49820 -38.17931 -36.65648 -34.22328 -33.45377 -31.66259 -31.00998 -30.27312 -26.93532 -25.90940 -24.70671 -22.75010 -22.11225 -20.79852 -19.72352 -18.28053 -17.49928 -16.81065 -16.14768 -15.77831 -15.38942 -15.08630 -14.84461 -14.41881 -14.06055 -14.04673 -13.29009 -13.14728 -12.82359 -12.39961 -12.34078 -12.19481 -12.02856 -11.87040 -11.84031 -11.54453 -11.07680 -10.96218 -10.88872 -10.59028 -10.40448 -10.31148 -10.23886 -9.96430 -9.88410 -9.55823 -9.10802 -8.82221 -8.31069 -8.24430 -5.93185 -3.97562 3.30763 3.35470 3.35794 3.40708 3.42703 4.00245 4.48732 4.56669 4.64868 4.78790 4.91568 5.11829 5.16980 5.23491 5.35130 5.38031 5.41485 5.41780 5.49045 5.53794 5.58422 5.66889 5.68168 5.72383 5.86075 5.97677 6.09739 6.17611 6.26466 6.29663 6.38299 6.41918 6.53592 6.89924 6.98608 7.43908 7.77062 7.84162 7.90625 8.10820 8.42201 8.84379 9.11023 9.65670 11.17746 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.004159 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.055103 B = 6731.549193 C = 7012.679866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.621 5.621 3 C 0.511 3.489 4 O -0.530 6.530 5 C -0.127 4.127 6 C 0.038 3.962 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.151 3.849 16 C -0.122 4.122 17 C -0.141 4.141 18 C -0.084 4.084 19 C 0.080 3.920 20 O -0.572 6.572 21 C -0.103 4.103 22 C -0.138 4.138 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.376 0.624 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 -20.062 4.051 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.358 5.358 3 C 0.302 3.698 4 O -0.406 6.406 5 C -0.167 4.167 6 C 0.000 4.000 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.048 3.952 16 C -0.160 4.160 17 C -0.177 4.177 18 C -0.103 4.103 19 C 0.002 3.998 20 O -0.377 6.377 21 C -0.141 4.141 22 C -0.176 4.176 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.744 -19.993 3.581 22.114 hybrid contribution -1.052 0.891 0.437 1.446 sum -9.796 -19.103 4.017 21.841 Atomic orbital electron populations 1.22049 0.80826 1.02983 1.01114 1.48079 1.06281 1.05701 1.75722 1.21475 0.88426 0.85352 0.74596 1.90623 1.14376 1.87226 1.48339 1.21874 1.00640 0.92158 1.02059 1.18890 0.93184 0.89388 0.98534 1.21185 0.92833 0.91072 1.51425 0.92750 1.25017 0.94807 0.99158 0.95342 1.69988 1.06043 1.26645 1.50156 0.86665 0.79556 0.83272 0.78506 1.20283 1.21289 1.20275 1.20897 0.92885 0.83017 0.98403 1.21773 0.98056 0.98178 0.97945 1.22174 0.98073 1.03861 0.93637 1.21135 0.96623 1.00148 0.92367 1.22246 0.92508 0.99157 0.85849 1.86498 1.38995 1.95867 1.16346 1.21405 0.97395 0.97485 0.97809 1.21967 0.98719 1.03053 0.93877 0.92648 0.91225 0.90506 0.90453 0.90549 0.95893 0.95906 0.92923 0.91241 0.90698 0.91133 0.92072 0.89049 0.90962 0.93650 0.94054 0.77713 0.92036 0.91657 0.91872 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 8.00 59.85 0.48 1.27 16 2 N -0.62 -9.09 2.25 -173.92 -0.39 -9.48 16 3 C 0.51 10.07 7.38 -10.98 -0.08 9.99 16 4 O -0.53 -12.56 14.03 5.56 0.08 -12.48 16 5 C -0.13 -2.64 4.27 -27.88 -0.12 -2.76 16 6 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.15 1.98 2.95 -67.93 -0.20 1.78 16 16 C -0.12 -1.13 4.91 -26.73 -0.13 -1.26 16 17 C -0.14 -1.21 4.54 -26.73 -0.12 -1.34 16 18 C -0.08 -0.87 2.43 -90.62 -0.22 -1.09 16 19 C 0.08 0.74 6.43 37.16 0.24 0.98 16 20 O -0.57 -5.87 13.20 -35.23 -0.46 -6.33 16 21 C -0.10 -1.37 4.94 -26.73 -0.13 -1.51 16 22 C -0.14 -1.95 5.23 -26.73 -0.14 -2.09 16 23 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 24 H 0.07 0.75 6.69 -51.92 -0.35 0.41 16 25 H 0.08 0.64 4.95 -51.93 -0.26 0.38 16 26 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 27 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.58 6.89 -51.93 -0.36 0.22 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.80 3.66 -51.93 -0.19 0.61 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 2.14 9.12 45.56 0.42 2.55 16 40 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 41 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.60 6.11 -51.93 -0.32 1.28 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -34.87 327.84 -7.43 -42.30 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.35 Total: 0.13 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.96 Total: -8.91 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.34 Total: -36.44 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.39 Total: -18.81 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.87 -7.43 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362900139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.842 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds