Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 120.00385 * 2 1 4 4 O 1.21279 * 120.00469 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99653 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47055 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47287 * 179.97438 * 6 5 3 8 8 H 1.08006 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00347 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99796 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46720 * 60.00820 * 11 9 7 13 13 H 1.48496 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47496 * 300.01111 * 11 9 7 15 15 C 1.46506 * 119.99554 * 179.97438 * 2 1 3 16 16 C 1.52995 * 109.47175 * 359.19616 * 15 2 1 17 17 C 1.52998 * 109.47135 * 299.99795 * 16 15 2 18 18 C 1.53006 * 109.47122 * 300.00006 * 17 16 15 19 19 C 1.52998 * 109.47122 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.47121 * 175.00592 * 19 18 17 21 21 C 1.53003 * 109.46779 * 60.00270 * 18 17 16 22 22 C 1.52998 * 109.47073 * 299.99760 * 21 18 17 23 23 H 1.08997 * 109.47449 * 275.92127 * 1 2 3 24 24 H 1.09008 * 109.46691 * 35.91915 * 1 2 3 25 25 H 1.09003 * 109.47230 * 155.91552 * 1 2 3 26 26 H 1.08992 * 109.47155 * 299.99776 * 5 3 2 27 27 H 1.09005 * 109.47309 * 59.99901 * 5 3 2 28 28 H 1.09005 * 109.47199 * 300.00278 * 6 5 3 29 29 H 1.09005 * 109.46970 * 59.99905 * 6 5 3 30 30 H 0.96998 * 120.00359 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46632 * 119.19749 * 15 2 1 32 32 H 1.08996 * 109.46991 * 179.97438 * 16 15 2 33 33 H 1.09000 * 109.47482 * 60.00174 * 16 15 2 34 34 H 1.08995 * 109.47042 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47120 * 60.00154 * 17 16 15 36 36 H 1.08996 * 109.47244 * 300.00073 * 18 17 16 37 37 H 1.09000 * 109.47223 * 295.00425 * 19 18 17 38 38 H 1.08997 * 109.47265 * 54.99944 * 19 18 17 39 39 H 0.96697 * 114.00365 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47394 * 59.99894 * 21 18 17 41 41 H 1.08998 * 109.46863 * 180.02562 * 21 18 17 42 42 H 1.09005 * 109.47242 * 300.00585 * 22 21 18 43 43 H 1.09003 * 109.47242 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 1.6263 4.9403 -0.0010 8 1 0.5463 4.9403 -0.0018 9 6 2.3157 6.1343 -0.0001 10 7 3.6308 6.1343 0.0014 11 14 1.3818 7.7521 -0.0023 12 1 0.5259 7.8311 1.2087 13 1 2.3468 8.8807 -0.0014 14 1 0.5301 7.8304 -1.2163 15 6 2.1975 -1.2688 0.0006 16 6 1.2033 -2.4316 0.0213 17 6 0.3390 -2.3411 1.2805 18 6 1.2338 -2.4130 2.5196 19 6 0.3694 -2.3232 3.7788 20 8 1.1902 -2.5067 4.9340 21 6 2.2279 -1.2501 2.4988 22 6 3.0923 -1.3406 1.2396 23 1 -0.3634 0.1060 1.0221 24 1 -0.3633 0.8323 -0.6029 25 1 -0.3634 -0.9382 -0.4194 26 1 0.7592 2.5298 -0.8908 27 1 0.7584 2.5302 0.8892 28 1 3.0058 3.5774 0.8907 29 1 3.0071 3.5774 -0.8893 30 1 4.1159 6.9743 0.0017 31 1 2.8133 -1.3332 -0.8965 32 1 1.7483 -3.3755 0.0213 33 1 0.5659 -2.3805 -0.8614 34 1 -0.3689 -3.1697 1.2955 35 1 -0.2059 -1.3972 1.2801 36 1 1.7787 -3.3570 2.5200 37 1 -0.1070 -1.3438 3.8234 38 1 -0.3962 -3.0985 3.7500 39 1 0.7073 -2.4625 5.7707 40 1 1.6830 -0.3062 2.4984 41 1 2.8657 -1.3016 3.3812 42 1 3.6372 -2.2846 1.2399 43 1 3.8008 -0.5124 1.2250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362900139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -119.336056 kcal Electronic energy + Delta-G solvation = -21756.017241 eV Core-core repulsion = 18606.827283 eV Total energy + Delta-G solvation = -3149.189958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67489 -39.41073 -37.56768 -35.61328 -35.34349 -33.17495 -32.20860 -31.54148 -27.90097 -27.80365 -25.80260 -23.91364 -23.61702 -21.93169 -20.86290 -19.68785 -18.69513 -18.23521 -17.47812 -17.16010 -16.73653 -16.43610 -16.12681 -15.79428 -15.20282 -14.93930 -14.67809 -14.43549 -14.21177 -13.84784 -13.70132 -13.35473 -13.15680 -13.14195 -12.94905 -12.77963 -12.66926 -12.46753 -12.38493 -11.99787 -11.87024 -11.59159 -11.32434 -11.25327 -11.20326 -11.08225 -10.79095 -10.56174 -10.35844 -9.50176 -8.17773 -6.32476 1.41474 1.46484 1.54237 1.75956 2.12894 2.43607 3.14886 3.36152 3.64124 3.78910 3.88757 4.04337 4.14056 4.28036 4.40445 4.42845 4.43716 4.48212 4.50332 4.54754 4.56795 4.70813 4.78283 4.79417 4.81821 4.90170 5.05739 5.07427 5.15443 5.22025 5.23266 5.30146 5.43180 5.48294 5.51632 5.62230 5.81189 5.86147 6.17351 6.49240 6.85971 6.94309 7.35173 7.38568 8.94866 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.004159 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.055103 B = 6731.549193 C = 7012.679866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.606 5.606 3 C 0.506 3.494 4 O -0.586 6.586 5 C -0.114 4.114 6 C 0.044 3.956 7 C -0.543 4.543 8 H 0.076 0.924 9 C -0.007 4.007 10 N -0.939 5.939 11 Si 0.975 3.025 12 H -0.262 1.262 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.146 3.854 16 C -0.113 4.113 17 C -0.136 4.136 18 C -0.081 4.081 19 C 0.079 3.921 20 O -0.598 6.598 21 C -0.097 4.097 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.097 0.903 28 H -0.023 1.023 29 H -0.021 1.021 30 H 0.263 0.737 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 -21.489 3.924 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.339 5.339 3 C 0.296 3.704 4 O -0.466 6.466 5 C -0.154 4.154 6 C 0.007 3.993 7 C -0.581 4.581 8 H 0.094 0.906 9 C -0.204 4.204 10 N -0.579 5.579 11 Si 0.799 3.201 12 H -0.186 1.186 13 H -0.214 1.214 14 H -0.185 1.185 15 C 0.043 3.957 16 C -0.150 4.150 17 C -0.173 4.173 18 C -0.099 4.099 19 C 0.001 3.999 20 O -0.406 6.406 21 C -0.134 4.134 22 C -0.175 4.175 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.115 0.885 28 H -0.004 1.004 29 H -0.002 1.002 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.919 -21.470 3.465 25.296 hybrid contribution 0.285 1.270 0.513 1.399 sum -12.634 -20.200 3.979 24.155 Atomic orbital electron populations 1.22467 0.77734 1.05243 1.02651 1.48007 1.08159 1.04630 1.73146 1.21299 0.87686 0.86687 0.74773 1.90613 1.16656 1.88102 1.51254 1.21622 0.99186 0.90465 1.04138 1.18665 0.93661 0.92645 0.94343 1.21676 0.93959 0.91554 1.50926 0.90568 1.26162 0.95704 1.04020 0.94557 1.70183 1.08413 1.27867 1.51418 0.85356 0.78044 0.77201 0.79537 1.18636 1.21354 1.18537 1.21063 0.93906 0.83803 0.96902 1.21780 0.97432 0.96384 0.99414 1.22185 0.97880 1.05352 0.91858 1.21131 0.96346 0.98109 0.94348 1.22302 0.92493 1.00145 0.84931 1.86455 1.40476 1.95941 1.17721 1.21306 0.97609 0.98292 0.96221 1.21895 0.98524 1.01744 0.95372 0.91034 0.90852 0.86892 0.88021 0.88465 1.00421 1.00208 0.92881 0.92822 0.89177 0.88819 0.88810 0.88845 0.91004 0.93680 0.91301 0.75640 0.93997 0.93777 0.90388 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 8.00 127.77 1.02 2.10 16 2 N -0.61 -17.23 2.25 -822.56 -1.85 -19.08 16 3 C 0.51 20.66 7.38 87.66 0.65 21.31 16 4 O -0.59 -30.10 14.03 -3.03 -0.04 -30.14 16 5 C -0.11 -4.81 4.27 29.85 0.13 -4.68 16 6 C 0.04 2.57 4.26 29.85 0.13 2.69 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 9 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 10 N -0.94 -60.81 13.29 21.45 0.28 -60.52 16 11 Si 0.98 44.77 29.54 68.60 2.03 46.79 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.15 3.73 2.95 44.99 0.13 3.87 16 16 C -0.11 -1.66 4.91 30.59 0.15 -1.51 16 17 C -0.14 -1.74 4.54 30.60 0.14 -1.60 16 18 C -0.08 -1.48 2.43 -10.79 -0.03 -1.50 16 19 C 0.08 1.24 6.43 71.98 0.46 1.70 16 20 O -0.60 -11.36 13.20 -148.98 -1.97 -13.33 16 21 C -0.10 -2.60 4.94 30.59 0.15 -2.45 16 22 C -0.14 -4.04 5.23 30.59 0.16 -3.88 16 23 H 0.07 1.14 6.70 -2.39 -0.02 1.12 16 24 H 0.07 1.32 6.69 -2.38 -0.02 1.31 16 25 H 0.11 1.27 4.95 -2.39 -0.01 1.26 16 26 H 0.10 3.75 7.42 -2.39 -0.02 3.73 16 27 H 0.10 3.65 8.11 -2.38 -0.02 3.63 16 28 H -0.02 -1.49 8.10 -2.38 -0.02 -1.51 16 29 H -0.02 -1.34 8.10 -2.38 -0.02 -1.36 16 30 H 0.26 15.94 8.31 -92.71 -0.77 15.16 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.02 6.89 -2.39 -0.02 1.01 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.19 3.66 -2.39 -0.01 1.18 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.39 3.84 9.12 -74.06 -0.68 3.16 16 40 H 0.04 1.27 7.60 -2.39 -0.02 1.25 16 41 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 42 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.04 1.59 6.11 -2.39 -0.01 1.57 16 Total: -1.00 -82.73 327.84 2.56 -80.17 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.32 Total: 11.32 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 3.79 Total: -15.21 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.57 Total: -79.61 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -2.01 Total: -43.47 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -82.73 2.56 -80.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362900139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.164 kcal (2) G-P(sol) polarization free energy of solvation -82.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds