Wall clock time and date at job start Mon Mar 30 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.52999 * 110.27764 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46852 * 300.69733 * 7 6 4 9 9 C 1.53005 * 109.47112 * 60.69482 * 7 6 4 10 10 C 1.54592 * 110.31054 * 57.90453 * 6 4 3 11 11 C 1.55107 * 102.84683 * 219.18837 * 10 6 4 12 12 N 1.48529 * 103.28063 * 37.30761 * 11 10 6 13 13 C 1.46898 * 110.99764 * 200.32880 * 12 11 10 14 14 C 1.50699 * 109.47537 * 287.40200 * 13 12 11 15 15 H 1.07998 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99964 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00089 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.46971 * 90.00137 * 18 16 14 20 20 H 1.48491 * 109.47395 * 210.00597 * 18 16 14 21 21 H 1.48502 * 109.46941 * 330.00478 * 18 16 14 22 22 C 1.47896 * 105.82472 * 320.84469 * 12 11 10 23 23 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08999 * 109.47516 * 180.70003 * 7 6 4 29 29 H 1.08999 * 109.47560 * 60.00050 * 8 7 6 30 30 H 1.09000 * 109.47488 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47210 * 300.00062 * 8 7 6 32 32 H 1.09000 * 109.46635 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47153 * 299.99861 * 9 7 6 34 34 H 1.08994 * 109.47007 * 60.00595 * 9 7 6 35 35 H 1.08996 * 110.72626 * 337.49461 * 10 6 4 36 36 H 1.09002 * 110.72268 * 100.77258 * 10 6 4 37 37 H 1.09002 * 110.59370 * 278.87626 * 11 10 6 38 38 H 1.08998 * 110.68330 * 155.78720 * 11 10 6 39 39 H 1.09008 * 109.47200 * 47.40164 * 13 12 11 40 40 H 1.09006 * 109.47373 * 167.39332 * 13 12 11 41 41 H 0.96997 * 120.00334 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.91987 * 265.98192 * 22 12 11 43 43 H 1.08998 * 110.08433 * 144.77440 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4494 2.8790 0.0010 8 6 5.9308 2.1231 1.2410 9 6 5.9320 2.1545 -1.2572 10 6 3.4133 3.7275 1.2294 11 6 3.1723 5.1465 0.6514 12 7 2.6412 4.8751 -0.7089 13 6 2.7996 6.0477 -1.5795 14 6 1.8154 7.1133 -1.1711 15 1 1.1394 6.9370 -0.3475 16 6 1.7772 8.3130 -1.8497 17 7 0.9179 9.2427 -1.4937 18 14 2.9460 8.6177 -3.2747 19 1 2.3124 8.1666 -4.5396 20 1 3.2506 10.0683 -3.3635 21 1 4.2040 7.8603 -3.0536 22 6 3.4163 3.7250 -1.2225 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 5.8518 3.8919 0.0141 29 1 5.5285 1.1102 1.2281 30 1 7.0200 2.0817 1.2413 31 1 5.5870 2.6391 2.1375 32 1 7.0212 2.1125 -1.2570 33 1 5.5296 1.1416 -1.2702 34 1 5.5890 2.6931 -2.1406 35 1 2.4832 3.3011 1.6050 36 1 4.1714 3.7518 2.0123 37 1 4.1087 5.7017 0.5951 38 1 2.4390 5.6867 1.2501 39 1 3.8142 6.4352 -1.4860 40 1 2.6148 5.7595 -2.6144 41 1 0.8913 10.0869 -1.9707 42 1 4.2628 4.0803 -1.8100 43 1 2.7792 3.0887 -1.8367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373183967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:17 Heat of formation + Delta-G solvation = -85.605273 kcal Electronic energy + Delta-G solvation = -22159.492042 eV Core-core repulsion = 19011.764761 eV Total energy + Delta-G solvation = -3147.727281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07171 -38.60073 -36.77443 -34.75457 -32.67890 -31.81772 -30.68220 -28.94109 -27.25092 -26.62477 -23.83894 -22.56369 -21.92142 -21.70058 -20.10107 -19.45949 -17.33049 -16.77685 -16.42899 -16.15189 -15.37575 -14.42549 -14.33932 -14.17489 -14.06643 -13.76325 -13.34918 -12.93639 -12.83663 -12.60244 -12.38979 -12.32727 -12.09735 -11.75658 -11.66327 -11.54813 -11.39805 -11.26277 -11.22147 -10.97381 -10.56009 -10.43160 -10.42298 -10.37501 -10.26330 -9.86666 -9.64329 -9.28671 -8.56996 -7.49935 -6.05126 -4.02430 2.27297 2.72912 3.27867 3.35418 3.36580 4.41420 4.45389 4.64521 4.69587 4.87081 4.93129 4.96837 5.00882 5.18244 5.21185 5.28278 5.36838 5.50889 5.64482 5.66881 5.72731 5.74216 5.76099 5.88285 5.91648 5.95634 6.04256 6.09794 6.14898 6.19805 6.30446 6.40683 6.45083 6.52589 6.72062 6.75481 6.89076 7.52117 7.83623 7.87124 7.90049 8.64180 9.04750 9.56494 11.08090 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.005595 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.629157 B = 5003.368093 C = 5709.746411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.342 6.342 4 C 0.482 3.518 5 O -0.509 6.509 6 C -0.058 4.058 7 C -0.071 4.071 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.498 5.498 13 C 0.153 3.847 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.049 3.951 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.089 0.911 39 H -0.008 1.008 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.050 0.950 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.274 -16.941 4.006 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.258 6.258 4 C 0.327 3.673 5 O -0.398 6.398 6 C -0.059 4.059 7 C -0.089 4.089 8 C -0.218 4.218 9 C -0.218 4.218 10 C -0.153 4.153 11 C -0.075 4.075 12 N -0.222 5.222 13 C 0.026 3.974 14 C -0.545 4.545 15 H 0.099 0.901 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.700 3.300 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.079 4.079 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.010 0.990 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.830 -17.171 3.953 18.560 hybrid contribution 1.446 0.386 -0.970 1.784 sum 7.276 -16.785 2.983 18.536 Atomic orbital electron populations 1.21794 0.92604 1.02551 1.04035 1.22992 0.95556 0.80666 1.02070 1.86630 1.24310 1.31524 1.83384 1.23541 0.80437 0.92050 0.71319 1.90513 1.59970 1.43403 1.45941 1.21538 0.95684 0.89004 0.99719 1.21023 0.90885 1.00347 0.96659 1.22142 1.00869 1.02204 0.96569 1.22097 1.00896 1.02164 0.96630 1.22804 1.01421 0.96119 0.94980 1.23094 0.98846 0.94045 0.91536 1.64779 1.49704 1.05469 1.02241 1.20373 0.95912 0.88426 0.92655 1.20983 1.18518 0.97011 1.17948 0.90074 1.24893 0.95380 0.95987 0.97030 1.69887 1.36185 1.06433 1.41397 0.86893 0.82047 0.77515 0.83503 1.20145 1.21179 1.19326 1.22935 0.96670 0.94132 0.94203 0.91332 0.91161 0.90592 0.91548 0.91603 0.90087 0.90322 0.92845 0.92842 0.92780 0.90536 0.92813 0.89982 0.90378 0.94104 0.89272 0.99004 0.95816 0.92671 0.93191 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.34 -5.05 9.65 -39.24 -0.38 -5.42 16 4 C 0.48 7.21 5.82 36.00 0.21 7.42 16 5 O -0.51 -7.82 11.26 -18.76 -0.21 -8.03 16 6 C -0.06 -0.86 0.38 -154.30 -0.06 -0.91 16 7 C -0.07 -0.94 2.06 -90.62 -0.19 -1.12 16 8 C -0.16 -1.93 8.69 37.16 0.32 -1.61 16 9 C -0.16 -2.07 8.68 37.16 0.32 -1.74 16 10 C -0.12 -1.70 5.95 -24.78 -0.15 -1.84 16 11 C 0.05 0.96 6.12 -1.81 -0.01 0.95 16 12 N -0.50 -10.33 5.24 -231.78 -1.21 -11.54 16 13 C 0.15 3.68 3.54 -4.98 -0.02 3.66 16 14 C -0.51 -14.29 9.46 -34.44 -0.33 -14.62 16 15 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 18 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 C 0.05 0.85 5.37 -2.75 -0.01 0.84 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.05 5.53 -51.93 -0.29 0.76 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.60 6.29 -51.93 -0.33 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.06 5.65 -51.93 -0.29 0.77 16 34 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 35 H 0.08 1.22 7.56 -51.93 -0.39 0.83 16 36 H 0.08 0.98 6.01 -51.93 -0.31 0.67 16 37 H 0.04 0.74 7.81 -51.93 -0.41 0.33 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 39 H -0.01 -0.18 6.89 -51.92 -0.36 -0.54 16 40 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.05 0.85 6.12 -51.93 -0.32 0.53 16 43 H 0.07 1.30 7.59 -51.93 -0.39 0.90 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.83 329.54 -7.34 -38.17 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.21 Total: -0.94 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 0.61 Total: -7.23 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.44 Total: -38.20 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.59 Total: -13.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -7.34 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373183967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.432 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds