Wall clock time and date at job start Mon Mar 30 2020 01:27:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45206 * 109.46777 * 2 1
4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1
5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2
6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2
7 7 C 1.52999 * 110.27764 * 180.02562 * 6 4 3
8 8 C 1.52997 * 109.46852 * 300.69733 * 7 6 4
9 9 C 1.53005 * 109.47112 * 60.69482 * 7 6 4
10 10 C 1.54592 * 110.31054 * 57.90453 * 6 4 3
11 11 C 1.55107 * 102.84683 * 219.18837 * 10 6 4
12 12 N 1.48529 * 103.28063 * 37.30761 * 11 10 6
13 13 C 1.46898 * 110.99764 * 200.32880 * 12 11 10
14 14 C 1.50699 * 109.47537 * 287.40200 * 13 12 11
15 15 H 1.07998 * 119.99788 * 359.97438 * 14 13 12
16 16 C 1.37883 * 120.00146 * 180.02562 * 14 13 12
17 17 N 1.31511 * 119.99964 * 179.97438 * 16 14 13
18 18 Si 1.86800 * 120.00089 * 359.97438 * 16 14 13
19 19 H 1.48495 * 109.46971 * 90.00137 * 18 16 14
20 20 H 1.48491 * 109.47395 * 210.00597 * 18 16 14
21 21 H 1.48502 * 109.46941 * 330.00478 * 18 16 14
22 22 C 1.47896 * 105.82472 * 320.84469 * 12 11 10
23 23 H 1.09000 * 109.47486 * 299.99948 * 1 2 3
24 24 H 1.09001 * 109.47362 * 60.00671 * 1 2 3
25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3
27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3
28 28 H 1.08999 * 109.47516 * 180.70003 * 7 6 4
29 29 H 1.08999 * 109.47560 * 60.00050 * 8 7 6
30 30 H 1.09000 * 109.47488 * 180.02562 * 8 7 6
31 31 H 1.08999 * 109.47210 * 300.00062 * 8 7 6
32 32 H 1.09000 * 109.46635 * 180.02562 * 9 7 6
33 33 H 1.08999 * 109.47153 * 299.99861 * 9 7 6
34 34 H 1.08994 * 109.47007 * 60.00595 * 9 7 6
35 35 H 1.08996 * 110.72626 * 337.49461 * 10 6 4
36 36 H 1.09002 * 110.72268 * 100.77258 * 10 6 4
37 37 H 1.09002 * 110.59370 * 278.87626 * 11 10 6
38 38 H 1.08998 * 110.68330 * 155.78720 * 11 10 6
39 39 H 1.09008 * 109.47200 * 47.40164 * 13 12 11
40 40 H 1.09006 * 109.47373 * 167.39332 * 13 12 11
41 41 H 0.96997 * 120.00334 * 179.97438 * 17 16 14
42 42 H 1.08999 * 109.91987 * 265.98192 * 22 12 11
43 43 H 1.08998 * 110.08433 * 144.77440 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3446 1.5450 0.0005
5 8 4.0807 0.5868 0.0015
6 6 3.9205 2.9376 0.0012
7 6 5.4494 2.8790 0.0010
8 6 5.9308 2.1231 1.2410
9 6 5.9320 2.1545 -1.2572
10 6 3.4133 3.7275 1.2294
11 6 3.1723 5.1465 0.6514
12 7 2.6412 4.8751 -0.7089
13 6 2.7996 6.0477 -1.5795
14 6 1.8154 7.1133 -1.1711
15 1 1.1394 6.9370 -0.3475
16 6 1.7772 8.3130 -1.8497
17 7 0.9179 9.2427 -1.4937
18 14 2.9460 8.6177 -3.2747
19 1 2.3124 8.1666 -4.5396
20 1 3.2506 10.0683 -3.3635
21 1 4.2040 7.8603 -3.0536
22 6 3.4163 3.7250 -1.2225
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5137 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 1.8934 -0.5138 -0.8900
27 1 1.8934 -0.5137 0.8900
28 1 5.8518 3.8919 0.0141
29 1 5.5285 1.1102 1.2281
30 1 7.0200 2.0817 1.2413
31 1 5.5870 2.6391 2.1375
32 1 7.0212 2.1125 -1.2570
33 1 5.5296 1.1416 -1.2702
34 1 5.5890 2.6931 -2.1406
35 1 2.4832 3.3011 1.6050
36 1 4.1714 3.7518 2.0123
37 1 4.1087 5.7017 0.5951
38 1 2.4390 5.6867 1.2501
39 1 3.8142 6.4352 -1.4860
40 1 2.6148 5.7595 -2.6144
41 1 0.8913 10.0869 -1.9707
42 1 4.2628 4.0803 -1.8100
43 1 2.7792 3.0887 -1.8367
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000373183967.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:17
Heat of formation + Delta-G solvation = -105.056335 kcal
Electronic energy + Delta-G solvation = -22160.335504 eV
Core-core repulsion = 19011.764761 eV
Total energy + Delta-G solvation = -3148.570743 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.24203 -39.88267 -37.95846 -36.11294 -34.63482 -32.85182 -32.09254 -30.25108
-28.91776 -27.79605 -24.98944 -24.06518 -23.28902 -22.73312 -21.71988 -20.59266
-18.95627 -18.43071 -17.52113 -17.36174 -16.85609 -16.04402 -15.68136 -15.41898
-15.17753 -15.09198 -14.81140 -14.53464 -14.10954 -13.86884 -13.51397 -13.49394
-13.26365 -13.10744 -12.92529 -12.79907 -12.60883 -12.45907 -12.39643 -12.26541
-12.15884 -11.96428 -11.85539 -11.61858 -11.46522 -11.42831 -11.36802 -10.77967
-10.76763 -9.12761 -8.26841 -6.30293 1.11012 1.36069 1.36768 1.47251
1.68877 2.35246 3.06104 3.19520 3.43878 3.46644 3.62379 3.89018
4.02914 4.09234 4.13484 4.24231 4.34418 4.41110 4.42979 4.50288
4.66185 4.72513 4.76726 4.83326 4.85078 4.86750 4.89432 4.93333
5.03392 5.09520 5.10213 5.13689 5.14316 5.22760 5.34123 5.44147
5.53753 5.69602 5.95353 6.18382 6.58865 6.76060 6.77417 7.33234
8.89871
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.019691 B = 0.005595 C = 0.004903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1421.629157 B = 5003.368093 C = 5709.746411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.054 3.946
3 O -0.360 6.360
4 C 0.483 3.517
5 O -0.513 6.513
6 C -0.053 4.053
7 C -0.071 4.071
8 C -0.156 4.156
9 C -0.158 4.158
10 C -0.102 4.102
11 C 0.051 3.949
12 N -0.520 5.520
13 C 0.164 3.836
14 C -0.514 4.514
15 H 0.037 0.963
16 C 0.009 3.991
17 N -0.948 5.948
18 Si 0.945 3.055
19 H -0.267 1.267
20 H -0.281 1.281
21 H -0.249 1.249
22 C 0.051 3.949
23 H 0.064 0.936
24 H 0.059 0.941
25 H 0.104 0.896
26 H 0.070 0.930
27 H 0.075 0.925
28 H 0.084 0.916
29 H 0.065 0.935
30 H 0.068 0.932
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.064 0.936
34 H 0.049 0.951
35 H 0.078 0.922
36 H 0.106 0.894
37 H 0.044 0.956
38 H 0.066 0.934
39 H -0.003 1.003
40 H 0.025 0.975
41 H 0.267 0.733
42 H 0.058 0.942
43 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.255 -18.365 3.555 20.447
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.019 4.019
3 O -0.277 6.277
4 C 0.327 3.673
5 O -0.402 6.402
6 C -0.055 4.055
7 C -0.089 4.089
8 C -0.213 4.213
9 C -0.215 4.215
10 C -0.140 4.140
11 C -0.077 4.077
12 N -0.244 5.244
13 C 0.037 3.963
14 C -0.552 4.552
15 H 0.055 0.945
16 C -0.188 4.188
17 N -0.588 5.588
18 Si 0.768 3.232
19 H -0.192 1.192
20 H -0.207 1.207
21 H -0.173 1.173
22 C -0.077 4.077
23 H 0.083 0.917
24 H 0.079 0.921
25 H 0.122 0.878
26 H 0.088 0.912
27 H 0.093 0.907
28 H 0.103 0.897
29 H 0.084 0.916
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.083 0.917
34 H 0.068 0.932
35 H 0.097 0.903
36 H 0.124 0.876
37 H 0.062 0.938
38 H 0.085 0.915
39 H 0.014 0.986
40 H 0.043 0.957
41 H 0.076 0.924
42 H 0.076 0.924
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 7.810 -18.628 3.514 20.502
hybrid contribution 0.724 0.770 -0.758 1.301
sum 8.534 -17.857 2.756 19.983
Atomic orbital electron populations
1.21822 0.91183 1.04202 1.03330 1.23277 0.96702 0.79230 1.02687
1.86621 1.24204 1.33630 1.83218 1.23453 0.80574 0.91901 0.71325
1.90516 1.60083 1.43497 1.46131 1.21508 0.96978 0.88734 0.98253
1.21075 0.89383 1.00857 0.97605 1.22086 1.01819 1.01216 0.96132
1.22059 1.01924 1.01253 0.96225 1.22728 1.02260 0.93480 0.95547
1.23067 0.98083 0.96203 0.90304 1.64620 1.51632 1.05245 1.02951
1.20113 0.94538 0.88533 0.93155 1.21197 1.18644 0.98648 1.16726
0.94454 1.25824 0.97253 0.95562 1.00170 1.70044 1.38378 1.07181
1.43228 0.85748 0.80186 0.77719 0.79517 1.19206 1.20686 1.17282
1.22901 0.96452 0.92965 0.95352 0.91705 0.92138 0.87758 0.91173
0.90705 0.89732 0.91579 0.91302 0.92001 0.91125 0.91665 0.93215
0.90290 0.87591 0.93777 0.91503 0.98562 0.95683 0.92435 0.92432
0.91155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.56 10.29 71.98 0.74 -1.82 16
2 C 0.05 1.16 6.19 71.98 0.45 1.60 16
3 O -0.36 -10.30 9.65 -51.35 -0.50 -10.80 16
4 C 0.48 13.75 5.82 71.23 0.41 14.16 16
5 O -0.51 -14.87 11.26 21.94 0.25 -14.62 16
6 C -0.05 -1.49 0.38 -52.05 -0.02 -1.51 16
7 C -0.07 -1.69 2.06 -10.79 -0.02 -1.71 16
8 C -0.16 -3.28 8.69 71.98 0.63 -2.65 16
9 C -0.16 -3.66 8.68 71.98 0.62 -3.04 16
10 C -0.10 -2.87 5.95 31.86 0.19 -2.68 16
11 C 0.05 1.86 6.12 86.71 0.53 2.39 16
12 N -0.52 -21.57 5.24 -887.21 -4.64 -26.22 16
13 C 0.16 7.83 3.54 85.56 0.30 8.13 16
14 C -0.51 -29.76 9.46 25.60 0.24 -29.51 16
15 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16
16 C 0.01 0.54 5.47 84.66 0.46 1.00 16
17 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16
18 Si 0.94 43.73 27.47 68.60 1.88 45.61 16
19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16
21 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16
22 C 0.05 1.72 5.37 86.45 0.46 2.19 16
23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
26 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16
27 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16
28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
29 H 0.07 1.59 5.53 -2.39 -0.01 1.58 16
30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.06 1.18 6.29 -2.39 -0.02 1.17 16
32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.06 1.68 5.65 -2.39 -0.01 1.66 16
34 H 0.05 1.18 6.60 -2.39 -0.02 1.16 16
35 H 0.08 2.27 7.56 -2.39 -0.02 2.26 16
36 H 0.11 2.39 6.01 -2.39 -0.01 2.37 16
37 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16
38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16
39 H 0.00 -0.15 6.89 -2.38 -0.02 -0.17 16
40 H 0.03 1.19 7.51 -2.38 -0.02 1.17 16
41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
42 H 0.06 1.85 6.12 -2.39 -0.01 1.83 16
43 H 0.07 2.40 7.59 -2.39 -0.02 2.38 16
Total: -1.00 -67.22 329.54 3.21 -64.01
By element:
Atomic # 1 Polarization: 13.45 SS G_CDS: 0.92 Total: 14.37 kcal
Atomic # 6 Polarization: -18.44 SS G_CDS: 5.00 Total: -13.44 kcal
Atomic # 7 Polarization: -80.79 SS G_CDS: -4.35 Total: -85.14 kcal
Atomic # 8 Polarization: -25.17 SS G_CDS: -0.25 Total: -25.42 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal
Total: -67.22 3.21 -64.01 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000373183967.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal
(2) G-P(sol) polarization free energy of solvation -67.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds