Wall clock time and date at job start Mon Mar 30 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.52999 * 110.27764 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46852 * 300.69733 * 7 6 4 9 9 C 1.53005 * 109.47112 * 60.69482 * 7 6 4 10 10 C 1.54592 * 110.31054 * 57.90453 * 6 4 3 11 11 C 1.55107 * 102.84683 * 219.18837 * 10 6 4 12 12 N 1.48529 * 103.28063 * 37.30761 * 11 10 6 13 13 C 1.46898 * 110.99764 * 200.32880 * 12 11 10 14 14 C 1.50699 * 109.47537 * 287.40200 * 13 12 11 15 15 H 1.07998 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99964 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00089 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.46971 * 90.00137 * 18 16 14 20 20 H 1.48491 * 109.47395 * 210.00597 * 18 16 14 21 21 H 1.48502 * 109.46941 * 330.00478 * 18 16 14 22 22 C 1.47896 * 105.82472 * 320.84469 * 12 11 10 23 23 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08999 * 109.47516 * 180.70003 * 7 6 4 29 29 H 1.08999 * 109.47560 * 60.00050 * 8 7 6 30 30 H 1.09000 * 109.47488 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47210 * 300.00062 * 8 7 6 32 32 H 1.09000 * 109.46635 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47153 * 299.99861 * 9 7 6 34 34 H 1.08994 * 109.47007 * 60.00595 * 9 7 6 35 35 H 1.08996 * 110.72626 * 337.49461 * 10 6 4 36 36 H 1.09002 * 110.72268 * 100.77258 * 10 6 4 37 37 H 1.09002 * 110.59370 * 278.87626 * 11 10 6 38 38 H 1.08998 * 110.68330 * 155.78720 * 11 10 6 39 39 H 1.09008 * 109.47200 * 47.40164 * 13 12 11 40 40 H 1.09006 * 109.47373 * 167.39332 * 13 12 11 41 41 H 0.96997 * 120.00334 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.91987 * 265.98192 * 22 12 11 43 43 H 1.08998 * 110.08433 * 144.77440 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4494 2.8790 0.0010 8 6 5.9308 2.1231 1.2410 9 6 5.9320 2.1545 -1.2572 10 6 3.4133 3.7275 1.2294 11 6 3.1723 5.1465 0.6514 12 7 2.6412 4.8751 -0.7089 13 6 2.7996 6.0477 -1.5795 14 6 1.8154 7.1133 -1.1711 15 1 1.1394 6.9370 -0.3475 16 6 1.7772 8.3130 -1.8497 17 7 0.9179 9.2427 -1.4937 18 14 2.9460 8.6177 -3.2747 19 1 2.3124 8.1666 -4.5396 20 1 3.2506 10.0683 -3.3635 21 1 4.2040 7.8603 -3.0536 22 6 3.4163 3.7250 -1.2225 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 5.8518 3.8919 0.0141 29 1 5.5285 1.1102 1.2281 30 1 7.0200 2.0817 1.2413 31 1 5.5870 2.6391 2.1375 32 1 7.0212 2.1125 -1.2570 33 1 5.5296 1.1416 -1.2702 34 1 5.5890 2.6931 -2.1406 35 1 2.4832 3.3011 1.6050 36 1 4.1714 3.7518 2.0123 37 1 4.1087 5.7017 0.5951 38 1 2.4390 5.6867 1.2501 39 1 3.8142 6.4352 -1.4860 40 1 2.6148 5.7595 -2.6144 41 1 0.8913 10.0869 -1.9707 42 1 4.2628 4.0803 -1.8100 43 1 2.7792 3.0887 -1.8367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373183967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:17 Heat of formation + Delta-G solvation = -105.056335 kcal Electronic energy + Delta-G solvation = -22160.335504 eV Core-core repulsion = 19011.764761 eV Total energy + Delta-G solvation = -3148.570743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24203 -39.88267 -37.95846 -36.11294 -34.63482 -32.85182 -32.09254 -30.25108 -28.91776 -27.79605 -24.98944 -24.06518 -23.28902 -22.73312 -21.71988 -20.59266 -18.95627 -18.43071 -17.52113 -17.36174 -16.85609 -16.04402 -15.68136 -15.41898 -15.17753 -15.09198 -14.81140 -14.53464 -14.10954 -13.86884 -13.51397 -13.49394 -13.26365 -13.10744 -12.92529 -12.79907 -12.60883 -12.45907 -12.39643 -12.26541 -12.15884 -11.96428 -11.85539 -11.61858 -11.46522 -11.42831 -11.36802 -10.77967 -10.76763 -9.12761 -8.26841 -6.30293 1.11012 1.36069 1.36768 1.47251 1.68877 2.35246 3.06104 3.19520 3.43878 3.46644 3.62379 3.89018 4.02914 4.09234 4.13484 4.24231 4.34418 4.41110 4.42979 4.50288 4.66185 4.72513 4.76726 4.83326 4.85078 4.86750 4.89432 4.93333 5.03392 5.09520 5.10213 5.13689 5.14316 5.22760 5.34123 5.44147 5.53753 5.69602 5.95353 6.18382 6.58865 6.76060 6.77417 7.33234 8.89871 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.005595 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.629157 B = 5003.368093 C = 5709.746411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.483 3.517 5 O -0.513 6.513 6 C -0.053 4.053 7 C -0.071 4.071 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.102 4.102 11 C 0.051 3.949 12 N -0.520 5.520 13 C 0.164 3.836 14 C -0.514 4.514 15 H 0.037 0.963 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.945 3.055 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.249 1.249 22 C 0.051 3.949 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.066 0.934 39 H -0.003 1.003 40 H 0.025 0.975 41 H 0.267 0.733 42 H 0.058 0.942 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -18.365 3.555 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.327 3.673 5 O -0.402 6.402 6 C -0.055 4.055 7 C -0.089 4.089 8 C -0.213 4.213 9 C -0.215 4.215 10 C -0.140 4.140 11 C -0.077 4.077 12 N -0.244 5.244 13 C 0.037 3.963 14 C -0.552 4.552 15 H 0.055 0.945 16 C -0.188 4.188 17 N -0.588 5.588 18 Si 0.768 3.232 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.173 1.173 22 C -0.077 4.077 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.810 -18.628 3.514 20.502 hybrid contribution 0.724 0.770 -0.758 1.301 sum 8.534 -17.857 2.756 19.983 Atomic orbital electron populations 1.21822 0.91183 1.04202 1.03330 1.23277 0.96702 0.79230 1.02687 1.86621 1.24204 1.33630 1.83218 1.23453 0.80574 0.91901 0.71325 1.90516 1.60083 1.43497 1.46131 1.21508 0.96978 0.88734 0.98253 1.21075 0.89383 1.00857 0.97605 1.22086 1.01819 1.01216 0.96132 1.22059 1.01924 1.01253 0.96225 1.22728 1.02260 0.93480 0.95547 1.23067 0.98083 0.96203 0.90304 1.64620 1.51632 1.05245 1.02951 1.20113 0.94538 0.88533 0.93155 1.21197 1.18644 0.98648 1.16726 0.94454 1.25824 0.97253 0.95562 1.00170 1.70044 1.38378 1.07181 1.43228 0.85748 0.80186 0.77719 0.79517 1.19206 1.20686 1.17282 1.22901 0.96452 0.92965 0.95352 0.91705 0.92138 0.87758 0.91173 0.90705 0.89732 0.91579 0.91302 0.92001 0.91125 0.91665 0.93215 0.90290 0.87591 0.93777 0.91503 0.98562 0.95683 0.92435 0.92432 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.16 6.19 71.98 0.45 1.60 16 3 O -0.36 -10.30 9.65 -51.35 -0.50 -10.80 16 4 C 0.48 13.75 5.82 71.23 0.41 14.16 16 5 O -0.51 -14.87 11.26 21.94 0.25 -14.62 16 6 C -0.05 -1.49 0.38 -52.05 -0.02 -1.51 16 7 C -0.07 -1.69 2.06 -10.79 -0.02 -1.71 16 8 C -0.16 -3.28 8.69 71.98 0.63 -2.65 16 9 C -0.16 -3.66 8.68 71.98 0.62 -3.04 16 10 C -0.10 -2.87 5.95 31.86 0.19 -2.68 16 11 C 0.05 1.86 6.12 86.71 0.53 2.39 16 12 N -0.52 -21.57 5.24 -887.21 -4.64 -26.22 16 13 C 0.16 7.83 3.54 85.56 0.30 8.13 16 14 C -0.51 -29.76 9.46 25.60 0.24 -29.51 16 15 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 16 C 0.01 0.54 5.47 84.66 0.46 1.00 16 17 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 18 Si 0.94 43.73 27.47 68.60 1.88 45.61 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 22 C 0.05 1.72 5.37 86.45 0.46 2.19 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.59 5.53 -2.39 -0.01 1.58 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.18 6.29 -2.39 -0.02 1.17 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.68 5.65 -2.39 -0.01 1.66 16 34 H 0.05 1.18 6.60 -2.39 -0.02 1.16 16 35 H 0.08 2.27 7.56 -2.39 -0.02 2.26 16 36 H 0.11 2.39 6.01 -2.39 -0.01 2.37 16 37 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.00 -0.15 6.89 -2.38 -0.02 -0.17 16 40 H 0.03 1.19 7.51 -2.38 -0.02 1.17 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.06 1.85 6.12 -2.39 -0.01 1.83 16 43 H 0.07 2.40 7.59 -2.39 -0.02 2.38 16 Total: -1.00 -67.22 329.54 3.21 -64.01 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.92 Total: 14.37 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.00 Total: -13.44 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -4.35 Total: -85.14 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.25 Total: -25.42 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -67.22 3.21 -64.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373183967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds