Wall clock time and date at job start Mon Mar 30 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47307 * 2 1 4 4 C 1.34230 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00412 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99907 * 180.02562 * 4 3 2 7 7 C 1.52997 * 110.27440 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46817 * 57.91255 * 7 6 4 9 9 C 1.53000 * 109.47060 * 297.91343 * 7 6 4 10 10 C 1.54592 * 110.39004 * 302.15016 * 6 4 3 11 11 C 1.54938 * 102.92396 * 97.00333 * 10 6 4 12 12 N 1.48528 * 103.22999 * 37.40907 * 11 10 6 13 13 C 1.46897 * 111.00068 * 200.28071 * 12 11 10 14 14 C 1.50695 * 109.47317 * 307.39769 * 13 12 11 15 15 H 1.08004 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99674 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46876 * 60.00152 * 18 16 14 20 20 H 1.48504 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47297 * 300.00026 * 18 16 14 22 22 C 1.47905 * 105.82075 * 320.79902 * 12 11 10 23 23 H 1.09001 * 109.46678 * 300.00109 * 1 2 3 24 24 H 1.09007 * 109.46639 * 59.99657 * 1 2 3 25 25 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47386 * 240.00065 * 2 1 3 27 27 H 1.08999 * 109.47244 * 120.00237 * 2 1 3 28 28 H 1.09002 * 109.47153 * 177.91024 * 7 6 4 29 29 H 1.09002 * 109.47075 * 299.99262 * 8 7 6 30 30 H 1.08996 * 109.47407 * 60.00219 * 8 7 6 31 31 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 7 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 7 6 34 34 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 35 35 H 1.09005 * 110.71797 * 215.35652 * 10 6 4 36 36 H 1.08994 * 110.72662 * 338.63595 * 10 6 4 37 37 H 1.09004 * 110.66022 * 278.97306 * 11 10 6 38 38 H 1.09000 * 110.80778 * 155.91592 * 11 10 6 39 39 H 1.08999 * 109.47221 * 67.40060 * 13 12 11 40 40 H 1.09007 * 109.47000 * 187.39742 * 13 12 11 41 41 H 0.97005 * 120.00459 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.91205 * 265.97916 * 22 12 11 43 43 H 1.08995 * 109.92035 * 144.68504 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9209 2.9374 0.0012 7 6 5.4497 2.8786 0.0010 8 6 5.9298 2.0939 -1.2215 9 6 5.9335 2.1837 1.2754 10 6 3.4147 3.7302 -1.2256 11 6 2.2258 4.5392 -0.6489 12 7 2.6940 4.9086 0.7113 13 6 1.5623 5.2538 1.5820 14 6 0.7107 6.2987 0.9083 15 1 0.9828 6.6691 -0.0691 16 6 -0.4157 6.7820 1.5397 17 7 -0.7472 6.3308 2.7296 18 14 -1.4709 8.0779 0.7048 19 1 -1.9825 7.5449 -0.5834 20 1 -2.6150 8.4268 1.5849 21 1 -0.6544 9.2915 0.4491 22 6 3.4158 3.7241 1.2248 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8522 3.8910 -0.0360 29 1 5.5274 1.0816 -1.1844 30 1 5.5852 2.5890 -2.1294 31 1 7.0190 2.0525 -1.2219 32 1 5.5915 2.7428 2.1464 33 1 5.5310 1.1715 1.3124 34 1 7.0227 2.1423 1.2755 35 1 4.1904 4.3983 -1.5999 36 1 3.0763 3.0530 -2.0098 37 1 1.3305 3.9199 -0.5927 38 1 2.0381 5.4311 -1.2467 39 1 0.9633 4.3627 1.7697 40 1 1.9376 5.6452 2.5276 41 1 -1.5399 6.6705 3.1737 42 1 2.7395 3.1031 1.8123 43 1 4.2601 4.0404 1.8373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373183968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:19 Heat of formation + Delta-G solvation = -90.850643 kcal Electronic energy + Delta-G solvation = -22336.735978 eV Core-core repulsion = 19188.781241 eV Total energy + Delta-G solvation = -3147.954738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99983 -38.36985 -36.74704 -34.72850 -32.72548 -31.70177 -30.41742 -28.71268 -26.84128 -26.36644 -23.84254 -22.75533 -22.01525 -21.45934 -20.05523 -19.41281 -17.26755 -16.51545 -16.37235 -15.76563 -15.10340 -14.63903 -14.25854 -14.17490 -13.90262 -13.47693 -13.25893 -12.95463 -12.72654 -12.45319 -12.37111 -12.24373 -11.73824 -11.61877 -11.48737 -11.41193 -11.35621 -11.22731 -10.93352 -10.74323 -10.60957 -10.45010 -10.40237 -10.35444 -10.22268 -9.82575 -9.58759 -9.09618 -8.45928 -7.33795 -6.03280 -4.04811 2.33903 2.80547 3.33102 3.37220 3.39935 4.42379 4.56587 4.76342 4.83478 4.95137 5.01388 5.10229 5.14722 5.25859 5.31988 5.38062 5.47332 5.66097 5.69492 5.81410 5.81616 5.83634 5.87868 6.03724 6.05402 6.06669 6.10098 6.18846 6.24742 6.34546 6.39204 6.51933 6.64094 6.72576 6.81186 7.19699 7.39180 7.73179 7.95161 7.98031 8.18032 8.49347 9.02073 9.59438 11.08060 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.005849 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.240397 B = 4785.688638 C = 5548.528915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.346 6.346 4 C 0.478 3.522 5 O -0.508 6.508 6 C -0.058 4.058 7 C -0.065 4.065 8 C -0.162 4.162 9 C -0.160 4.160 10 C -0.109 4.109 11 C 0.053 3.947 12 N -0.512 5.512 13 C 0.185 3.815 14 C -0.513 4.513 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.050 3.950 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.081 0.919 39 H -0.004 1.004 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.043 0.957 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -11.102 -6.479 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.262 6.262 4 C 0.322 3.678 5 O -0.397 6.397 6 C -0.060 4.060 7 C -0.084 4.084 8 C -0.219 4.219 9 C -0.217 4.217 10 C -0.148 4.148 11 C -0.075 4.075 12 N -0.236 5.236 13 C 0.059 3.941 14 C -0.551 4.551 15 H 0.081 0.919 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.079 4.079 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.013 0.987 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.315 -10.930 -6.324 15.119 hybrid contribution -1.241 -0.187 -0.194 1.270 sum 7.073 -11.116 -6.518 14.700 Atomic orbital electron populations 1.21803 0.92588 1.02556 1.04136 1.22984 0.95578 0.80577 1.02018 1.86633 1.24458 1.31737 1.83410 1.23696 0.80408 0.92320 0.71335 1.90499 1.59919 1.43383 1.45923 1.21543 0.96026 0.88537 0.99863 1.20990 0.90656 1.00440 0.96296 1.22139 1.00737 1.02242 0.96784 1.22091 1.00765 1.02079 0.96812 1.22666 0.99508 0.97864 0.94723 1.23011 0.94736 0.98203 0.91507 1.64965 1.26537 1.29382 1.02751 1.19901 0.86136 0.95501 0.92550 1.21153 1.08016 1.22104 1.03851 0.91875 1.24976 0.97633 0.96891 0.94931 1.69947 1.26226 1.43477 1.13979 0.86580 0.79739 0.81998 0.79215 1.20274 1.21355 1.20140 1.22975 0.98991 0.91944 0.93987 0.91083 0.91368 0.90543 0.91613 0.91532 0.89612 0.90285 0.93135 0.92991 0.92588 0.90982 0.92837 0.89799 0.91656 0.93270 0.90028 0.98661 0.95031 0.92870 0.93920 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 37.16 0.38 -1.34 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.35 -5.68 9.87 -39.26 -0.39 -6.06 16 4 C 0.48 7.72 5.74 36.01 0.21 7.93 16 5 O -0.51 -8.33 11.27 -18.74 -0.21 -8.54 16 6 C -0.06 -0.90 0.38 -154.30 -0.06 -0.96 16 7 C -0.07 -0.88 1.98 -90.62 -0.18 -1.06 16 8 C -0.16 -2.02 8.70 37.16 0.32 -1.69 16 9 C -0.16 -2.11 8.68 37.16 0.32 -1.78 16 10 C -0.11 -1.68 5.13 -24.87 -0.13 -1.81 16 11 C 0.05 1.03 5.55 -1.90 -0.01 1.02 16 12 N -0.51 -10.99 5.39 -231.89 -1.25 -12.24 16 13 C 0.18 4.81 4.79 -4.98 -0.02 4.79 16 14 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 15 H 0.06 1.71 6.52 -52.48 -0.34 1.37 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.05 0.91 5.47 -2.75 -0.02 0.90 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 27 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.08 1.11 5.41 -51.93 -0.28 0.83 16 30 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.73 6.46 -51.93 -0.34 0.40 16 33 H 0.07 1.04 5.77 -51.93 -0.30 0.74 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.18 7.78 -51.93 -0.40 0.77 16 36 H 0.06 0.92 7.85 -51.93 -0.41 0.52 16 37 H 0.05 1.03 7.96 -51.93 -0.41 0.62 16 38 H 0.08 1.60 7.14 -51.93 -0.37 1.23 16 39 H 0.00 -0.12 7.81 -51.93 -0.41 -0.53 16 40 H 0.03 0.89 8.14 -51.92 -0.42 0.46 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.04 0.84 6.98 -51.93 -0.36 0.48 16 43 H 0.08 1.40 6.28 -51.93 -0.33 1.07 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -30.09 332.42 -7.73 -37.82 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.27 Total: -0.62 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.66 Total: -5.99 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.51 Total: -38.04 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.60 Total: -14.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.09 -7.73 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373183968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.027 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds