Wall clock time and date at job start Mon Mar 30 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47307 * 2 1 4 4 C 1.34230 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00412 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99907 * 180.02562 * 4 3 2 7 7 C 1.52997 * 110.27440 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46817 * 57.91255 * 7 6 4 9 9 C 1.53000 * 109.47060 * 297.91343 * 7 6 4 10 10 C 1.54592 * 110.39004 * 302.15016 * 6 4 3 11 11 C 1.54938 * 102.92396 * 97.00333 * 10 6 4 12 12 N 1.48528 * 103.22999 * 37.40907 * 11 10 6 13 13 C 1.46897 * 111.00068 * 200.28071 * 12 11 10 14 14 C 1.50695 * 109.47317 * 307.39769 * 13 12 11 15 15 H 1.08004 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99674 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46876 * 60.00152 * 18 16 14 20 20 H 1.48504 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47297 * 300.00026 * 18 16 14 22 22 C 1.47905 * 105.82075 * 320.79902 * 12 11 10 23 23 H 1.09001 * 109.46678 * 300.00109 * 1 2 3 24 24 H 1.09007 * 109.46639 * 59.99657 * 1 2 3 25 25 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47386 * 240.00065 * 2 1 3 27 27 H 1.08999 * 109.47244 * 120.00237 * 2 1 3 28 28 H 1.09002 * 109.47153 * 177.91024 * 7 6 4 29 29 H 1.09002 * 109.47075 * 299.99262 * 8 7 6 30 30 H 1.08996 * 109.47407 * 60.00219 * 8 7 6 31 31 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 7 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 7 6 34 34 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 35 35 H 1.09005 * 110.71797 * 215.35652 * 10 6 4 36 36 H 1.08994 * 110.72662 * 338.63595 * 10 6 4 37 37 H 1.09004 * 110.66022 * 278.97306 * 11 10 6 38 38 H 1.09000 * 110.80778 * 155.91592 * 11 10 6 39 39 H 1.08999 * 109.47221 * 67.40060 * 13 12 11 40 40 H 1.09007 * 109.47000 * 187.39742 * 13 12 11 41 41 H 0.97005 * 120.00459 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.91205 * 265.97916 * 22 12 11 43 43 H 1.08995 * 109.92035 * 144.68504 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9209 2.9374 0.0012 7 6 5.4497 2.8786 0.0010 8 6 5.9298 2.0939 -1.2215 9 6 5.9335 2.1837 1.2754 10 6 3.4147 3.7302 -1.2256 11 6 2.2258 4.5392 -0.6489 12 7 2.6940 4.9086 0.7113 13 6 1.5623 5.2538 1.5820 14 6 0.7107 6.2987 0.9083 15 1 0.9828 6.6691 -0.0691 16 6 -0.4157 6.7820 1.5397 17 7 -0.7472 6.3308 2.7296 18 14 -1.4709 8.0779 0.7048 19 1 -1.9825 7.5449 -0.5834 20 1 -2.6150 8.4268 1.5849 21 1 -0.6544 9.2915 0.4491 22 6 3.4158 3.7241 1.2248 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8522 3.8910 -0.0360 29 1 5.5274 1.0816 -1.1844 30 1 5.5852 2.5890 -2.1294 31 1 7.0190 2.0525 -1.2219 32 1 5.5915 2.7428 2.1464 33 1 5.5310 1.1715 1.3124 34 1 7.0227 2.1423 1.2755 35 1 4.1904 4.3983 -1.5999 36 1 3.0763 3.0530 -2.0098 37 1 1.3305 3.9199 -0.5927 38 1 2.0381 5.4311 -1.2467 39 1 0.9633 4.3627 1.7697 40 1 1.9376 5.6452 2.5276 41 1 -1.5399 6.6705 3.1737 42 1 2.7395 3.1031 1.8123 43 1 4.2601 4.0404 1.8373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373183968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:18 Heat of formation + Delta-G solvation = -109.220535 kcal Electronic energy + Delta-G solvation = -22337.532557 eV Core-core repulsion = 19188.781241 eV Total energy + Delta-G solvation = -3148.751316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27220 -39.76278 -38.05351 -36.16340 -34.65873 -32.82886 -31.92141 -30.12428 -28.40897 -27.79227 -25.17232 -24.45709 -23.30312 -22.63044 -21.74381 -20.63228 -18.63600 -18.36971 -17.60084 -17.31444 -16.57564 -16.40143 -15.56814 -15.40215 -15.28067 -14.84966 -14.81290 -14.27871 -14.11155 -13.84654 -13.56176 -13.32383 -13.30034 -13.08397 -12.80499 -12.72828 -12.68569 -12.55835 -12.49790 -12.34500 -12.23429 -11.91806 -11.82417 -11.59604 -11.47729 -11.38189 -11.16194 -10.81317 -10.61861 -9.15763 -8.20416 -6.30565 1.06619 1.42252 1.45657 1.53256 1.65686 2.41298 3.13271 3.30610 3.45922 3.48243 3.67634 3.88433 3.95109 4.01861 4.22488 4.27348 4.34469 4.41530 4.48493 4.58362 4.71105 4.77429 4.83289 4.84533 4.87741 4.89255 4.99527 5.03880 5.08880 5.10364 5.15097 5.21334 5.25185 5.31337 5.36215 5.46667 5.62534 5.71193 5.94515 6.22004 6.49343 6.71817 6.85160 7.39316 8.91681 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.005849 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.240397 B = 4785.688638 C = 5548.528915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.476 3.524 5 O -0.510 6.510 6 C -0.053 4.053 7 C -0.063 4.063 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.096 4.096 11 C 0.052 3.948 12 N -0.516 5.516 13 C 0.202 3.798 14 C -0.528 4.528 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.051 3.949 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.079 0.921 39 H -0.038 1.038 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.020 0.980 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -11.024 -8.411 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.285 6.285 4 C 0.320 3.680 5 O -0.399 6.399 6 C -0.054 4.054 7 C -0.082 4.082 8 C -0.213 4.213 9 C -0.215 4.215 10 C -0.134 4.134 11 C -0.075 4.075 12 N -0.240 5.240 13 C 0.075 3.925 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.077 4.077 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.097 0.903 39 H -0.020 1.020 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.279 -10.866 -8.270 16.510 hybrid contribution -1.526 -0.287 0.453 1.618 sum 7.753 -11.153 -7.817 15.672 Atomic orbital electron populations 1.21828 0.91463 1.04315 1.02987 1.23261 0.96515 0.79226 1.02788 1.86632 1.24706 1.33841 1.83352 1.23753 0.80400 0.92470 0.71361 1.90501 1.59927 1.43501 1.46009 1.21551 0.97694 0.87937 0.98266 1.21049 0.88632 1.01390 0.97121 1.22076 1.01836 1.01015 0.96397 1.22060 1.02040 1.00921 0.96493 1.22624 0.98164 0.97817 0.94759 1.22999 0.95781 0.98331 0.90438 1.64861 1.24542 1.31395 1.03175 1.19515 0.86935 0.93822 0.92222 1.21487 1.08550 1.22407 1.04169 0.91284 1.25934 0.99036 0.99136 0.95496 1.70089 1.26872 1.44937 1.15589 0.85436 0.77778 0.79096 0.78332 1.19092 1.20993 1.19127 1.22974 0.98437 0.90949 0.95372 0.93025 0.91630 0.87315 0.90141 0.91380 0.88490 0.91896 0.92113 0.91187 0.93188 0.92541 0.90764 0.87497 0.89908 0.95573 0.90310 1.01996 0.98011 0.92714 0.96187 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 10.29 71.98 0.74 -2.55 16 2 C 0.06 1.41 6.19 71.98 0.45 1.85 16 3 O -0.37 -12.20 9.87 -51.42 -0.51 -12.71 16 4 C 0.48 15.11 5.74 71.24 0.41 15.52 16 5 O -0.51 -16.21 11.27 21.99 0.25 -15.97 16 6 C -0.05 -1.59 0.38 -52.05 -0.02 -1.61 16 7 C -0.06 -1.56 1.98 -10.79 -0.02 -1.58 16 8 C -0.16 -3.40 8.70 71.98 0.63 -2.78 16 9 C -0.16 -3.88 8.68 71.98 0.62 -3.26 16 10 C -0.10 -2.76 5.13 31.80 0.16 -2.60 16 11 C 0.05 2.02 5.55 86.65 0.48 2.50 16 12 N -0.52 -22.55 5.39 -887.58 -4.78 -27.33 16 13 C 0.20 11.00 4.79 85.56 0.41 11.41 16 14 C -0.53 -29.89 8.56 25.60 0.22 -29.67 16 15 H 0.07 3.75 6.52 -2.91 -0.02 3.73 16 16 C 0.00 0.12 5.46 84.66 0.46 0.59 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 18 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.05 1.90 5.47 86.45 0.47 2.37 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 27 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 28 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 29 H 0.06 1.61 5.41 -2.39 -0.01 1.59 16 30 H 0.06 1.19 7.35 -2.39 -0.02 1.18 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.26 6.46 -2.39 -0.02 1.25 16 33 H 0.06 1.57 5.77 -2.39 -0.01 1.56 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 2.63 7.78 -2.38 -0.02 2.62 16 36 H 0.08 2.14 7.85 -2.39 -0.02 2.12 16 37 H 0.03 1.12 7.96 -2.38 -0.02 1.10 16 38 H 0.08 3.05 7.14 -2.39 -0.02 3.03 16 39 H -0.04 -2.26 7.81 -2.39 -0.02 -2.27 16 40 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 42 H 0.02 0.83 6.98 -2.39 -0.02 0.81 16 43 H 0.09 3.21 6.28 -2.39 -0.02 3.19 16 Total: -1.00 -66.10 332.42 3.25 -62.85 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.97 Total: 13.37 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.01 Total: -9.80 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -4.50 Total: -83.78 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.26 Total: -28.68 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.10 3.25 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373183968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.375 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds