Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47007 * 2 1 4 4 C 1.42906 * 113.99801 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47382 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63302 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.67613 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.50709 * 109.45964 * 181.37529 * 12 11 10 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47199 * 90.00447 * 17 15 13 19 19 H 1.48500 * 109.47216 * 210.00118 * 17 15 13 20 20 H 1.48493 * 109.47310 * 329.99864 * 17 15 13 21 21 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 22 22 C 1.47207 * 120.81153 * 0.14103 * 9 7 6 23 23 H 1.09002 * 109.46934 * 300.00069 * 1 2 3 24 24 H 1.09004 * 109.47139 * 59.99725 * 1 2 3 25 25 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46934 * 239.99931 * 2 1 3 27 27 H 1.09000 * 109.46822 * 119.99886 * 2 1 3 28 28 H 1.08998 * 109.47221 * 59.99793 * 4 3 2 29 29 H 1.08996 * 109.46680 * 299.99946 * 4 3 2 30 30 H 1.08998 * 109.47498 * 59.99725 * 5 4 3 31 31 H 1.09004 * 109.46843 * 299.99359 * 5 4 3 32 32 H 1.08998 * 109.47350 * 59.99522 * 6 5 4 33 33 H 1.09003 * 109.47457 * 299.99533 * 6 5 4 34 34 H 1.09002 * 109.58861 * 113.81616 * 10 9 7 35 35 H 1.08996 * 109.58519 * 353.53507 * 10 9 7 36 36 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 37 37 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 38 38 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 39 39 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.49557 * 58.58503 * 21 12 11 41 41 H 1.08996 * 109.50003 * 178.68400 * 21 12 11 42 42 H 1.08996 * 109.53610 * 6.53712 * 22 9 7 43 43 H 1.09002 * 109.68003 * 246.23180 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 -0.0012 7 6 5.7393 4.5151 -0.0011 8 8 4.8808 5.3719 0.0003 9 7 7.0407 4.8652 -0.0016 10 6 7.4352 6.2806 -0.0010 11 6 8.3948 6.5285 -1.1691 12 6 9.5691 5.5517 -1.0755 13 6 10.5325 5.8151 -2.2042 14 1 10.3275 6.6002 -2.9169 15 6 11.6755 5.0539 -2.3267 16 7 11.9254 4.0982 -1.4585 17 14 12.8692 5.3800 -3.7260 18 1 13.8793 6.3784 -3.2925 19 1 13.5520 4.1151 -4.0991 20 1 12.1254 5.9054 -4.8989 21 6 9.0495 4.1156 -1.1739 22 6 8.0973 3.8403 -0.0053 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8333 0.9766 -0.8908 29 1 3.8339 0.9764 0.8892 30 1 3.4230 3.4214 0.8905 31 1 3.4223 3.4223 -0.8895 32 1 5.7526 2.5761 -0.8918 33 1 5.7542 2.5750 0.8882 34 1 7.9333 6.5207 0.9384 35 1 6.5504 6.9065 -0.1158 36 1 7.8684 6.3753 -2.1112 37 1 8.7675 7.5517 -1.1228 38 1 10.0803 5.6885 -0.1225 39 1 12.7297 3.5629 -1.5444 40 1 8.5169 3.9851 -2.1159 41 1 9.8886 3.4213 -1.1306 42 1 7.6482 2.8543 -0.1243 43 1 8.6498 3.8792 0.9335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397204969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = -126.173396 kcal Electronic energy + Delta-G solvation = -20731.827598 eV Core-core repulsion = 17582.341150 eV Total energy + Delta-G solvation = -3149.486447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12973 -39.07398 -38.40277 -35.31608 -34.89438 -33.06238 -31.98243 -31.54814 -28.53106 -27.31581 -24.67972 -23.93519 -23.65145 -22.68728 -21.26785 -19.71374 -18.60383 -17.95281 -17.51625 -17.41429 -16.64324 -16.52225 -16.42116 -15.33197 -15.26307 -14.89572 -14.70540 -14.57731 -14.14647 -14.04719 -13.58797 -13.46910 -13.26729 -13.09109 -12.82874 -12.62652 -12.51168 -12.44440 -12.39667 -12.13789 -11.91472 -11.85881 -11.74970 -11.47219 -11.00405 -10.97094 -10.65355 -10.50903 -10.38411 -9.53090 -8.07853 -6.20627 1.41212 1.43648 1.52256 1.66203 2.07339 2.44271 2.77802 3.18754 3.59399 3.99667 4.05262 4.14133 4.19699 4.27695 4.28565 4.38748 4.46380 4.49742 4.51620 4.54194 4.55773 4.59183 4.66780 4.78719 4.87036 4.90880 4.99687 5.03934 5.14371 5.19010 5.23773 5.27230 5.30800 5.44239 5.56987 5.66413 5.99718 6.15099 6.32635 6.40123 6.54983 6.88419 7.20859 7.46920 8.95564 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003261 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.779268 B = 8585.013021 C = 9139.657097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.418 6.418 4 C 0.065 3.935 5 C -0.096 4.096 6 C -0.128 4.128 7 C 0.507 3.493 8 O -0.593 6.593 9 N -0.606 5.606 10 C 0.116 3.884 11 C -0.113 4.113 12 C 0.044 3.956 13 C -0.535 4.535 14 H 0.045 0.955 15 C 0.019 3.981 16 N -0.910 5.910 17 Si 0.947 3.053 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.275 1.275 21 C -0.117 4.117 22 C 0.113 3.887 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.004 0.996 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -10.237 4.589 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.339 6.339 4 C -0.011 4.011 5 C -0.134 4.134 6 C -0.168 4.168 7 C 0.297 3.703 8 O -0.475 6.475 9 N -0.338 5.338 10 C -0.007 4.007 11 C -0.152 4.152 12 C 0.025 3.975 13 C -0.573 4.573 14 H 0.063 0.937 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.774 3.226 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.200 1.200 21 C -0.155 4.155 22 C -0.008 4.008 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.907 -9.778 4.632 18.420 hybrid contribution 1.213 0.322 -0.869 1.527 sum -13.694 -9.456 3.763 17.062 Atomic orbital electron populations 1.21782 0.93230 1.03355 1.02507 1.22669 0.96198 0.82803 1.01067 1.87860 1.22103 1.28244 1.95664 1.22517 0.80781 0.96078 1.01724 1.21111 0.93662 0.95705 1.02923 1.21582 0.96910 0.91571 1.06694 1.21256 0.81376 0.92738 0.74926 1.90635 1.50040 1.53900 1.52953 1.48397 1.06002 1.07814 1.71591 1.21541 0.98258 0.82141 0.98761 1.21849 0.96552 1.00054 0.96704 1.18624 0.91455 0.92087 0.95294 1.21540 1.06230 1.17014 1.12554 0.93682 1.25603 0.99171 0.95045 0.98194 1.69933 1.26800 1.21369 1.36884 0.85724 0.79262 0.77584 0.80058 1.20419 1.20630 1.19960 1.21803 0.97783 1.00619 0.95311 1.22017 0.88369 0.91027 0.99435 0.92455 0.92611 0.88995 0.92487 0.92229 0.91863 0.91358 0.92048 0.92645 0.86871 0.85920 0.91284 0.90548 0.94137 0.92034 0.97824 0.92866 0.95244 0.90015 0.87502 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.42 -9.37 10.34 -148.98 -1.54 -10.91 16 4 C 0.07 1.22 5.94 71.98 0.43 1.65 16 5 C -0.10 -2.27 4.87 30.59 0.15 -2.12 16 6 C -0.13 -2.88 4.05 29.85 0.12 -2.76 16 7 C 0.51 16.56 7.70 87.66 0.68 17.23 16 8 O -0.59 -23.69 15.39 -3.04 -0.05 -23.73 16 9 N -0.61 -20.58 2.98 -818.12 -2.44 -23.02 16 10 C 0.12 4.20 6.42 86.36 0.55 4.75 16 11 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 12 C 0.04 2.09 2.06 -11.51 -0.02 2.06 16 13 C -0.54 -28.67 8.56 25.60 0.22 -28.45 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 15 C 0.02 1.01 5.30 84.65 0.45 1.46 16 16 N -0.91 -49.34 11.31 21.45 0.24 -49.10 16 17 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.12 -4.95 5.16 30.68 0.16 -4.80 16 22 C 0.11 3.65 6.35 86.32 0.55 4.19 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 32 H 0.11 2.20 7.70 -2.39 -0.02 2.18 16 33 H 0.12 2.07 7.95 -2.39 -0.02 2.05 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.81 7.00 -2.39 -0.02 2.79 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 3.89 6.03 -2.39 -0.01 3.87 16 42 H 0.11 2.61 5.97 -2.39 -0.01 2.60 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.39 342.31 3.85 -60.53 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.95 Total: 13.13 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.66 Total: -11.34 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.20 Total: -72.12 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.59 Total: -34.65 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -64.39 3.85 -60.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397204969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.640 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds