Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.47249 * 2 1 4 4 C 1.42894 * 113.99924 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47272 * 300.00527 * 4 3 2 6 6 C 1.53005 * 109.47271 * 60.00557 * 4 3 2 7 7 C 1.50697 * 109.46955 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00310 * 140.19289 * 7 4 3 9 9 N 1.34777 * 120.00269 * 320.18854 * 7 4 3 10 10 C 1.46926 * 120.62809 * 354.86620 * 9 7 4 11 11 C 1.52764 * 109.00837 * 233.58713 * 10 9 7 12 12 C 1.53044 * 109.38118 * 305.58286 * 11 10 9 13 13 C 1.50703 * 109.44896 * 181.25477 * 12 11 10 14 14 H 1.07995 * 119.99972 * 245.12293 * 13 12 11 15 15 C 1.37874 * 119.99739 * 65.12271 * 13 12 11 16 16 N 1.31515 * 120.00276 * 5.34013 * 15 13 12 17 17 Si 1.86802 * 119.99938 * 185.33006 * 15 13 12 18 18 H 1.48502 * 109.46654 * 95.00453 * 17 15 13 19 19 H 1.48496 * 109.47318 * 215.00359 * 17 15 13 20 20 H 1.48497 * 109.46905 * 335.00466 * 17 15 13 21 21 C 1.53038 * 109.53424 * 61.24234 * 12 11 10 22 22 C 1.46919 * 120.63601 * 175.14595 * 9 7 4 23 23 H 1.09009 * 109.47024 * 59.99453 * 1 2 3 24 24 H 1.08994 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47218 * 299.99766 * 1 2 3 26 26 H 1.09010 * 109.46908 * 240.00539 * 2 1 3 27 27 H 1.08993 * 109.47333 * 120.00587 * 2 1 3 28 28 H 1.08994 * 109.47280 * 55.46237 * 5 4 3 29 29 H 1.09010 * 109.46873 * 175.45918 * 5 4 3 30 30 H 1.08995 * 109.47175 * 295.45238 * 5 4 3 31 31 H 1.09000 * 109.46985 * 64.56494 * 6 4 3 32 32 H 1.08993 * 109.47474 * 184.56332 * 6 4 3 33 33 H 1.09003 * 109.46842 * 304.57036 * 6 4 3 34 34 H 1.09003 * 109.58759 * 353.41434 * 10 9 7 35 35 H 1.08993 * 109.58926 * 113.84412 * 10 9 7 36 36 H 1.09004 * 109.56180 * 185.55611 * 11 10 9 37 37 H 1.09000 * 109.39035 * 65.51214 * 11 10 9 38 38 H 1.08999 * 109.46311 * 301.22632 * 12 11 10 39 39 H 0.97002 * 120.00305 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.50029 * 178.67986 * 21 12 11 41 41 H 1.09004 * 109.52720 * 58.60321 * 21 12 11 42 42 H 1.09000 * 109.58875 * 246.15996 * 22 9 7 43 43 H 1.09001 * 109.58886 * 6.44105 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9957 0.7814 1.2501 6 6 3.9968 0.7813 -1.2484 7 6 3.8195 2.9161 0.0012 8 8 4.7551 3.2938 0.6740 9 7 3.1273 3.7987 -0.7461 10 6 2.0645 3.3414 -1.6518 11 6 2.3384 3.8828 -3.0538 12 6 2.4980 5.4035 -2.9887 13 6 2.7377 5.9427 -4.3754 14 1 3.6814 6.4083 -4.6181 15 6 1.7521 5.8415 -5.3342 16 7 0.5671 5.3707 -5.0120 17 14 2.0998 6.3733 -7.0909 18 1 2.5079 5.1926 -7.8938 19 1 0.8745 6.9719 -7.6786 20 1 3.1933 7.3779 -7.0966 21 6 3.6875 5.7553 -2.0923 22 6 3.4251 5.2356 -0.6753 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.6479 -0.2507 1.2916 29 1 5.0850 0.7965 1.2107 30 1 3.6569 1.3151 2.1380 31 1 3.6589 1.3151 -2.1367 32 1 5.0859 0.7959 -1.2081 33 1 3.6485 -0.2508 -1.2904 34 1 2.0510 2.2518 -1.6787 35 1 1.1013 3.7123 -1.3016 36 1 1.5056 3.6323 -3.7109 37 1 3.2545 3.4371 -3.4413 38 1 1.5906 5.8467 -2.5785 39 1 -0.1263 5.2992 -5.6867 40 1 3.8151 6.8375 -2.0651 41 1 4.5914 5.2923 -2.4880 42 1 2.5752 5.7642 -0.2437 43 1 4.3077 5.3958 -0.0559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397230598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -91.324640 kcal Electronic energy + Delta-G solvation = -22417.045268 eV Core-core repulsion = 19269.069976 eV Total energy + Delta-G solvation = -3147.975292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37990 -38.10594 -36.80219 -33.44567 -32.95120 -31.11673 -30.60003 -30.06866 -27.41747 -26.35292 -24.32788 -22.86807 -22.18186 -21.26183 -19.67000 -18.45045 -17.44864 -16.29285 -15.91198 -15.83635 -15.43358 -14.64894 -14.51082 -14.07729 -13.55619 -13.36579 -13.00504 -12.81713 -12.71190 -12.51885 -12.48495 -12.15488 -12.09268 -11.99151 -11.79646 -11.46494 -11.34141 -11.09319 -10.94022 -10.89592 -10.61720 -10.33525 -10.12434 -9.69952 -9.48248 -9.33334 -9.06366 -8.81817 -8.34574 -7.93508 -6.02430 -4.05702 2.78643 3.28981 3.36590 3.40067 3.45112 3.74995 4.43044 4.62460 4.86148 4.90367 5.04401 5.16260 5.28490 5.29546 5.41044 5.46392 5.67458 5.71001 5.71085 5.85384 5.87047 5.92343 6.01513 6.05201 6.11010 6.18441 6.19503 6.26266 6.47056 6.54722 6.71513 6.92009 7.06129 7.11293 7.18607 7.27211 7.68908 7.93551 7.97572 8.00822 8.42607 8.54415 8.98345 9.58500 11.05622 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.005583 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.842052 B = 5013.933641 C = 5694.392495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.362 6.362 4 C 0.100 3.900 5 C -0.159 4.159 6 C -0.181 4.181 7 C 0.530 3.470 8 O -0.555 6.555 9 N -0.584 5.584 10 C 0.101 3.899 11 C -0.121 4.121 12 C 0.047 3.953 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.122 4.122 22 C 0.108 3.892 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -11.605 9.106 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.282 6.282 4 C 0.057 3.943 5 C -0.217 4.217 6 C -0.238 4.238 7 C 0.316 3.684 8 O -0.434 6.434 9 N -0.314 5.314 10 C -0.020 4.020 11 C -0.159 4.159 12 C 0.028 3.972 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.160 4.160 22 C -0.014 4.014 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.447 -11.256 9.364 14.713 hybrid contribution 0.170 0.028 -1.149 1.162 sum 1.617 -11.228 8.215 14.006 Atomic orbital electron populations 1.21739 0.93540 1.02030 1.03506 1.22580 0.95581 0.84465 1.00319 1.88164 1.19033 1.26387 1.94621 1.21560 0.82332 0.93796 0.96598 1.22163 1.02456 1.00006 0.97094 1.22479 1.02345 1.01310 0.97696 1.19942 0.82456 0.86474 0.79505 1.90652 1.29549 1.78977 1.44253 1.48159 1.35404 1.07109 1.40745 1.22195 0.88928 1.00206 0.90676 1.21912 1.01498 0.99338 0.93162 1.18652 0.92888 0.91599 0.94020 1.21195 1.00264 1.37993 0.95615 0.92771 1.24954 0.94928 0.95305 0.98672 1.69929 1.02824 1.46582 1.33546 0.86652 0.77765 0.78750 0.85275 1.20811 1.21299 1.19940 1.21998 1.00889 0.99743 0.93391 1.21749 1.00795 0.79621 0.99205 0.91382 0.91327 0.91938 0.92831 0.93119 0.91776 0.90634 0.91473 0.90333 0.90878 0.91052 0.89119 0.92172 0.89300 0.94439 0.94903 0.93061 0.92103 0.93092 0.92073 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.49 5.87 37.16 0.22 0.71 16 3 O -0.36 -5.11 6.94 -35.23 -0.24 -5.35 16 4 C 0.10 1.43 0.69 -91.77 -0.06 1.37 16 5 C -0.16 -1.97 7.77 37.16 0.29 -1.68 16 6 C -0.18 -2.30 8.05 37.16 0.30 -2.00 16 7 C 0.53 9.68 6.65 -10.99 -0.07 9.60 16 8 O -0.55 -11.36 15.54 5.56 0.09 -11.27 16 9 N -0.58 -11.06 2.98 -173.04 -0.52 -11.58 16 10 C 0.10 1.92 5.04 -3.93 -0.02 1.90 16 11 C -0.12 -2.68 5.19 -26.83 -0.14 -2.82 16 12 C 0.05 1.13 1.94 -91.73 -0.18 0.96 16 13 C -0.51 -13.78 8.49 -34.44 -0.29 -14.08 16 14 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 15 C 0.06 1.70 5.25 -17.82 -0.09 1.60 16 16 N -0.89 -24.77 11.94 55.43 0.66 -24.11 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 22 C 0.11 2.07 6.44 -3.71 -0.02 2.05 16 23 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 6.32 -51.92 -0.33 0.19 16 27 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 28 H 0.06 0.62 6.31 -51.93 -0.33 0.29 16 29 H 0.07 0.94 8.04 -51.92 -0.42 0.52 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.12 6.59 -51.93 -0.34 0.78 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.72 6.31 -51.93 -0.33 0.40 16 34 H 0.09 1.55 3.75 -51.93 -0.19 1.35 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 2.18 6.68 -51.93 -0.35 1.84 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 LS Contribution 328.14 15.07 4.94 4.94 Total: -1.00 -29.54 328.14 -7.09 -36.63 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.17 Total: 0.94 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 0.16 Total: -6.16 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.15 Total: -35.69 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.16 Total: -16.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.54 -7.09 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397230598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.695 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds