Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.47249 * 2 1 4 4 C 1.42894 * 113.99924 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47272 * 300.00527 * 4 3 2 6 6 C 1.53005 * 109.47271 * 60.00557 * 4 3 2 7 7 C 1.50697 * 109.46955 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00310 * 140.19289 * 7 4 3 9 9 N 1.34777 * 120.00269 * 320.18854 * 7 4 3 10 10 C 1.46926 * 120.62809 * 354.86620 * 9 7 4 11 11 C 1.52764 * 109.00837 * 233.58713 * 10 9 7 12 12 C 1.53044 * 109.38118 * 305.58286 * 11 10 9 13 13 C 1.50703 * 109.44896 * 181.25477 * 12 11 10 14 14 H 1.07995 * 119.99972 * 245.12293 * 13 12 11 15 15 C 1.37874 * 119.99739 * 65.12271 * 13 12 11 16 16 N 1.31515 * 120.00276 * 5.34013 * 15 13 12 17 17 Si 1.86802 * 119.99938 * 185.33006 * 15 13 12 18 18 H 1.48502 * 109.46654 * 95.00453 * 17 15 13 19 19 H 1.48496 * 109.47318 * 215.00359 * 17 15 13 20 20 H 1.48497 * 109.46905 * 335.00466 * 17 15 13 21 21 C 1.53038 * 109.53424 * 61.24234 * 12 11 10 22 22 C 1.46919 * 120.63601 * 175.14595 * 9 7 4 23 23 H 1.09009 * 109.47024 * 59.99453 * 1 2 3 24 24 H 1.08994 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47218 * 299.99766 * 1 2 3 26 26 H 1.09010 * 109.46908 * 240.00539 * 2 1 3 27 27 H 1.08993 * 109.47333 * 120.00587 * 2 1 3 28 28 H 1.08994 * 109.47280 * 55.46237 * 5 4 3 29 29 H 1.09010 * 109.46873 * 175.45918 * 5 4 3 30 30 H 1.08995 * 109.47175 * 295.45238 * 5 4 3 31 31 H 1.09000 * 109.46985 * 64.56494 * 6 4 3 32 32 H 1.08993 * 109.47474 * 184.56332 * 6 4 3 33 33 H 1.09003 * 109.46842 * 304.57036 * 6 4 3 34 34 H 1.09003 * 109.58759 * 353.41434 * 10 9 7 35 35 H 1.08993 * 109.58926 * 113.84412 * 10 9 7 36 36 H 1.09004 * 109.56180 * 185.55611 * 11 10 9 37 37 H 1.09000 * 109.39035 * 65.51214 * 11 10 9 38 38 H 1.08999 * 109.46311 * 301.22632 * 12 11 10 39 39 H 0.97002 * 120.00305 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.50029 * 178.67986 * 21 12 11 41 41 H 1.09004 * 109.52720 * 58.60321 * 21 12 11 42 42 H 1.09000 * 109.58875 * 246.15996 * 22 9 7 43 43 H 1.09001 * 109.58886 * 6.44105 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9957 0.7814 1.2501 6 6 3.9968 0.7813 -1.2484 7 6 3.8195 2.9161 0.0012 8 8 4.7551 3.2938 0.6740 9 7 3.1273 3.7987 -0.7461 10 6 2.0645 3.3414 -1.6518 11 6 2.3384 3.8828 -3.0538 12 6 2.4980 5.4035 -2.9887 13 6 2.7377 5.9427 -4.3754 14 1 3.6814 6.4083 -4.6181 15 6 1.7521 5.8415 -5.3342 16 7 0.5671 5.3707 -5.0120 17 14 2.0998 6.3733 -7.0909 18 1 2.5079 5.1926 -7.8938 19 1 0.8745 6.9719 -7.6786 20 1 3.1933 7.3779 -7.0966 21 6 3.6875 5.7553 -2.0923 22 6 3.4251 5.2356 -0.6753 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.6479 -0.2507 1.2916 29 1 5.0850 0.7965 1.2107 30 1 3.6569 1.3151 2.1380 31 1 3.6589 1.3151 -2.1367 32 1 5.0859 0.7959 -1.2081 33 1 3.6485 -0.2508 -1.2904 34 1 2.0510 2.2518 -1.6787 35 1 1.1013 3.7123 -1.3016 36 1 1.5056 3.6323 -3.7109 37 1 3.2545 3.4371 -3.4413 38 1 1.5906 5.8467 -2.5785 39 1 -0.1263 5.2992 -5.6867 40 1 3.8151 6.8375 -2.0651 41 1 4.5914 5.2923 -2.4880 42 1 2.5752 5.7642 -0.2437 43 1 4.3077 5.3958 -0.0559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397230598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -108.317714 kcal Electronic energy + Delta-G solvation = -22417.782143 eV Core-core repulsion = 19269.069976 eV Total energy + Delta-G solvation = -3148.712167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71437 -39.34639 -38.42243 -35.30336 -34.02016 -32.91851 -31.75777 -31.47386 -28.41313 -28.16203 -25.72880 -24.34676 -23.74483 -22.51491 -21.17871 -19.89860 -18.87774 -18.25382 -17.20143 -17.01427 -16.60276 -16.43517 -15.99609 -15.42770 -14.89985 -14.65447 -14.56747 -14.49338 -14.28157 -13.81973 -13.45080 -13.33885 -13.26505 -13.11948 -13.06143 -12.86564 -12.78540 -12.73658 -12.48272 -12.17026 -12.03780 -11.96661 -11.86716 -11.49115 -11.02533 -10.93221 -10.67281 -10.45348 -10.27936 -9.55001 -8.09981 -6.20334 1.40974 1.41787 1.43383 1.52640 2.04472 2.44470 2.66598 3.19405 3.42872 3.77685 3.87585 4.14550 4.22259 4.29419 4.33669 4.38031 4.47618 4.51926 4.54740 4.57398 4.59933 4.74097 4.77468 4.83288 4.87767 4.96667 5.02073 5.09098 5.11868 5.17772 5.21337 5.30456 5.35751 5.39885 5.51902 5.65901 5.97004 6.05024 6.15680 6.37961 6.48353 6.89878 7.08330 7.46808 8.96980 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.005583 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.842052 B = 5013.933641 C = 5694.392495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.384 6.384 4 C 0.102 3.898 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.523 3.477 8 O -0.579 6.579 9 N -0.591 5.591 10 C 0.119 3.881 11 C -0.109 4.109 12 C 0.044 3.956 13 C -0.534 4.534 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.112 4.112 22 C 0.112 3.888 23 H 0.052 0.948 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.003 0.997 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -13.429 9.307 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 O -0.304 6.304 4 C 0.060 3.940 5 C -0.212 4.212 6 C -0.235 4.235 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.321 5.321 10 C -0.003 4.003 11 C -0.147 4.147 12 C 0.026 3.974 13 C -0.572 4.572 14 H 0.066 0.934 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.150 4.150 22 C -0.010 4.010 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.739 -13.089 9.572 16.309 hybrid contribution 0.057 0.602 -1.185 1.331 sum 1.796 -12.487 8.386 15.149 Atomic orbital electron populations 1.21769 0.93104 1.03399 1.02447 1.22860 0.95955 0.82909 1.01886 1.88114 1.18620 1.28883 1.94824 1.21504 0.83041 0.91008 0.98437 1.22146 1.02245 1.01427 0.95347 1.22480 1.02551 1.02674 0.95817 1.20731 0.81666 0.88081 0.78405 1.90629 1.30515 1.79910 1.44999 1.48224 1.35616 1.07140 1.41136 1.21985 0.88459 1.01330 0.88517 1.21681 1.00116 0.98060 0.94873 1.18613 0.92744 0.92645 0.93412 1.21512 1.00134 1.38397 0.97166 0.93405 1.25644 0.94744 0.95398 1.02258 1.70035 1.03439 1.47191 1.34656 0.85699 0.77610 0.78479 0.80797 1.20161 1.20924 1.19668 1.21840 0.99097 1.00048 0.93998 1.21650 1.01276 0.80294 0.97816 0.92903 0.88750 0.92546 0.91475 0.91166 0.88539 0.90835 0.92659 0.92204 0.90557 0.87858 0.86819 0.93027 0.91797 0.94884 0.97852 0.92944 0.91747 0.93745 0.91474 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.04 0.71 5.87 71.98 0.42 1.13 16 3 O -0.38 -10.02 6.94 -148.98 -1.03 -11.06 16 4 C 0.10 2.74 0.69 -11.54 -0.01 2.73 16 5 C -0.15 -3.40 7.77 71.98 0.56 -2.84 16 6 C -0.18 -4.08 8.05 71.98 0.58 -3.50 16 7 C 0.52 18.64 6.65 87.66 0.58 19.22 16 8 O -0.58 -23.35 15.54 -3.03 -0.05 -23.39 16 9 N -0.59 -22.24 2.98 -819.75 -2.44 -24.68 16 10 C 0.12 4.49 5.04 86.22 0.43 4.93 16 11 C -0.11 -4.92 5.19 30.53 0.16 -4.76 16 12 C 0.04 2.20 1.94 -11.51 -0.02 2.18 16 13 C -0.53 -29.23 8.49 25.60 0.22 -29.01 16 14 H 0.05 2.61 7.75 -2.91 -0.02 2.59 16 15 C 0.02 1.02 5.25 84.65 0.44 1.46 16 16 N -0.91 -51.62 11.94 21.45 0.26 -51.36 16 17 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.11 -4.76 5.30 30.67 0.16 -4.60 16 22 C 0.11 4.30 6.44 86.36 0.56 4.85 16 23 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.03 6.32 -2.38 -0.02 1.02 16 27 H 0.07 1.00 6.32 -2.39 -0.02 0.99 16 28 H 0.10 1.47 6.31 -2.39 -0.02 1.46 16 29 H 0.07 1.65 8.04 -2.38 -0.02 1.63 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.60 6.59 -2.39 -0.02 1.59 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.69 6.31 -2.39 -0.02 1.67 16 34 H 0.11 3.79 3.75 -2.39 -0.01 3.78 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 3.22 6.68 -2.39 -0.02 3.20 16 37 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 39 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 3.09 7.00 -2.39 -0.02 3.08 16 Total: -1.00 -63.79 328.14 4.57 -59.23 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.98 Total: 16.10 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.83 Total: -10.01 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.19 Total: -76.04 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.08 Total: -34.45 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.79 4.57 -59.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397230598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.092 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds