Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46834 * 2 1 4 4 C 1.42902 * 113.99896 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47170 * 59.99956 * 4 3 2 6 6 C 1.53005 * 109.46944 * 299.99670 * 4 3 2 7 7 C 1.50711 * 109.47133 * 180.02562 * 4 3 2 8 8 O 1.21281 * 119.99304 * 1.65162 * 7 4 3 9 9 N 1.34771 * 119.99819 * 181.64975 * 7 4 3 10 10 C 1.46920 * 120.63443 * 355.08596 * 9 7 4 11 11 C 1.53194 * 108.77742 * 126.40692 * 10 9 7 12 12 C 1.53046 * 109.30697 * 54.63900 * 11 10 9 13 13 C 1.53042 * 109.53680 * 298.62952 * 12 11 10 14 14 H 1.08996 * 109.49891 * 301.41414 * 13 12 11 15 15 C 1.50696 * 109.49384 * 181.32092 * 13 12 11 16 16 H 1.08006 * 119.99874 * 240.15902 * 15 13 12 17 17 C 1.37868 * 120.00390 * 60.16268 * 15 13 12 18 18 N 1.31520 * 120.00083 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00203 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47224 * 90.00268 * 19 17 15 21 21 H 1.48503 * 109.47425 * 210.00241 * 19 17 15 22 22 H 1.48496 * 109.47249 * 330.00399 * 19 17 15 23 23 C 1.46924 * 120.62906 * 175.10213 * 9 7 4 24 24 H 1.09002 * 109.46586 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47373 * 299.99760 * 1 2 3 26 26 H 1.08999 * 109.46780 * 60.00178 * 1 2 3 27 27 H 1.09000 * 109.46879 * 240.00297 * 2 1 3 28 28 H 1.08994 * 109.47200 * 120.00051 * 2 1 3 29 29 H 1.09002 * 109.47239 * 169.28418 * 5 4 3 30 30 H 1.08999 * 109.47217 * 289.28562 * 5 4 3 31 31 H 1.08998 * 109.47341 * 49.29050 * 5 4 3 32 32 H 1.08996 * 109.47232 * 310.51471 * 6 4 3 33 33 H 1.08998 * 109.46306 * 70.51642 * 6 4 3 34 34 H 1.08999 * 109.46990 * 190.51058 * 6 4 3 35 35 H 1.08996 * 109.58891 * 246.20129 * 10 9 7 36 36 H 1.09007 * 109.58466 * 6.62622 * 10 9 7 37 37 H 1.09004 * 109.49588 * 174.58308 * 11 10 9 38 38 H 1.08994 * 109.50178 * 294.65488 * 11 10 9 39 39 H 1.09000 * 109.46308 * 58.65716 * 12 11 10 40 40 H 1.08999 * 109.45682 * 178.61597 * 12 11 10 41 41 H 0.96998 * 119.99963 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.58761 * 353.38382 * 23 9 7 43 43 H 1.09005 * 109.58617 * 113.80252 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9957 0.7816 -1.2501 6 6 3.9967 0.7813 1.2484 7 6 3.8194 2.9163 0.0001 8 8 2.9613 3.7728 0.0313 9 7 5.1204 3.2666 -0.0339 10 6 6.1731 2.2441 0.0365 11 6 7.1199 2.4285 -1.1536 12 6 7.6412 3.8674 -1.1673 13 6 6.4672 4.8355 -1.3297 14 1 5.9363 4.6117 -2.2549 15 6 6.9845 6.2502 -1.3755 16 1 6.6654 6.9662 -0.6326 17 6 7.8651 6.6304 -2.3659 18 7 8.2533 5.7587 -3.2709 19 14 8.5059 8.3841 -2.4231 20 1 9.7523 8.4822 -1.6219 21 1 8.7914 8.7612 -3.8308 22 1 7.4833 9.3033 -1.8622 23 6 5.5129 4.6783 -0.1417 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.0526 1.0284 -1.3512 30 1 3.8818 -0.2986 -1.1599 31 1 3.4552 1.1318 -2.1295 32 1 3.4593 1.1339 2.1287 33 1 3.8795 -0.2987 1.1594 34 1 5.0546 1.0251 1.3467 35 1 6.7295 2.3559 0.9670 36 1 5.7225 1.2524 -0.0054 37 1 7.9588 1.7385 -1.0614 38 1 6.5831 2.2267 -2.0804 39 1 8.1569 4.0758 -0.2298 40 1 8.3344 3.9945 -1.9988 41 1 8.8731 6.0261 -3.9675 42 1 4.6268 5.2929 -0.3009 43 1 6.0156 4.9888 0.7744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397616155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -75.284755 kcal Electronic energy + Delta-G solvation = -22223.126691 eV Core-core repulsion = 19075.846941 eV Total energy + Delta-G solvation = -3147.279750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46833 -38.10292 -36.62770 -34.17626 -32.73129 -31.32948 -30.80248 -29.74618 -27.57079 -25.37039 -25.12059 -23.47669 -21.75563 -21.38965 -19.97921 -18.45398 -16.73290 -16.61955 -16.08975 -15.73713 -15.29398 -14.82317 -14.54910 -14.06331 -13.88708 -13.54398 -13.35523 -12.85378 -12.77724 -12.62463 -12.40520 -12.27768 -12.07905 -12.01774 -11.80098 -11.54202 -11.18136 -10.99858 -10.92560 -10.79532 -10.67786 -10.26571 -9.93218 -9.77031 -9.58485 -9.46227 -9.12115 -8.81873 -8.39250 -7.90708 -6.02951 -4.09880 3.00439 3.13070 3.29461 3.36535 3.41026 3.97957 4.42228 4.56840 4.74981 4.87166 5.02608 5.14391 5.21525 5.24439 5.28324 5.32729 5.38591 5.50995 5.56946 5.62662 5.69832 5.79360 5.80981 5.99015 6.02015 6.07776 6.15365 6.29735 6.37402 6.45810 6.65184 6.78288 6.93264 7.12476 7.20359 7.32659 7.67949 7.89739 7.99369 8.05892 8.36528 8.65854 8.93748 9.55138 11.02642 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.004595 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.483107 B = 6091.857999 C = 6390.430932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.100 3.900 5 C -0.193 4.193 6 C -0.192 4.192 7 C 0.523 3.477 8 O -0.530 6.530 9 N -0.599 5.599 10 C 0.085 3.915 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.119 3.881 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.096 0.904 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -14.924 6.334 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.057 3.943 5 C -0.250 4.250 6 C -0.249 4.249 7 C 0.309 3.691 8 O -0.406 6.406 9 N -0.332 5.332 10 C -0.037 4.037 11 C -0.176 4.176 12 C -0.150 4.150 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.002 4.002 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.505 -14.299 6.193 16.886 hybrid contribution 0.668 0.593 -0.124 0.901 sum -5.838 -13.706 6.069 16.086 Atomic orbital electron populations 1.21722 0.93767 1.01867 1.03345 1.22512 0.95483 0.84495 1.00094 1.88104 1.18461 1.25677 1.94969 1.21271 0.82865 0.94145 0.95999 1.22800 1.03915 1.00702 0.97623 1.22800 1.03426 1.01015 0.97673 1.19845 0.82779 0.89291 0.77161 1.90674 1.49080 1.51556 1.49253 1.48141 1.04167 1.09183 1.71754 1.22366 0.89976 0.91715 0.99672 1.22064 0.97832 1.00730 0.96928 1.21626 1.00871 0.90387 1.02100 1.18980 0.91490 0.95063 0.92386 0.95210 1.21076 1.26547 0.95196 1.12430 0.92442 1.24928 0.96234 0.97322 0.95294 1.69872 1.33650 1.33928 1.15351 0.86574 0.79195 0.84952 0.77180 1.20700 1.21249 1.19834 1.22023 0.99754 0.78112 1.00269 0.91292 0.91855 0.91776 0.93169 0.93286 0.88936 0.91463 0.90942 0.91116 0.91335 0.89373 0.91737 0.89062 0.92362 0.92201 0.94520 0.88604 0.92986 0.90284 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.56 5.89 37.16 0.22 0.78 16 3 O -0.35 -5.61 9.52 -55.14 -0.52 -6.13 16 4 C 0.10 1.49 0.85 -91.77 -0.08 1.41 16 5 C -0.19 -2.46 7.50 37.15 0.28 -2.18 16 6 C -0.19 -2.20 7.51 37.16 0.28 -1.92 16 7 C 0.52 10.15 6.56 -10.98 -0.07 10.08 16 8 O -0.53 -12.54 15.93 -14.35 -0.23 -12.77 16 9 N -0.60 -11.20 2.97 -172.77 -0.51 -11.71 16 10 C 0.09 1.28 3.92 -3.71 -0.01 1.26 16 11 C -0.14 -2.34 5.75 -26.61 -0.15 -2.49 16 12 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 13 C 0.04 0.98 2.25 -91.66 -0.21 0.77 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 15 C -0.51 -13.88 8.56 -34.45 -0.29 -14.17 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 19 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.12 2.60 5.64 -3.71 -0.02 2.58 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.50 6.67 -51.93 -0.35 0.15 16 28 H 0.05 0.47 6.66 -51.93 -0.35 0.12 16 29 H 0.09 1.18 3.90 -51.93 -0.20 0.98 16 30 H 0.07 0.65 7.01 -51.93 -0.36 0.29 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.61 7.00 -51.93 -0.36 0.24 16 34 H 0.09 0.95 4.73 -51.93 -0.25 0.70 16 35 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 36 H 0.09 1.11 2.84 -51.93 -0.15 0.96 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.06 7.43 -51.93 -0.39 0.68 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 2.39 6.05 -51.93 -0.31 2.07 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.08 1.88 7.04 -51.93 -0.37 1.51 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -31.30 322.39 -7.56 -38.86 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.85 Total: 0.88 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.09 Total: -5.89 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.12 Total: -35.85 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.75 Total: -18.90 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.30 -7.56 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.422 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds