Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46834 * 2 1 4 4 C 1.42902 * 113.99896 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47170 * 59.99956 * 4 3 2 6 6 C 1.53005 * 109.46944 * 299.99670 * 4 3 2 7 7 C 1.50711 * 109.47133 * 180.02562 * 4 3 2 8 8 O 1.21281 * 119.99304 * 1.65162 * 7 4 3 9 9 N 1.34771 * 119.99819 * 181.64975 * 7 4 3 10 10 C 1.46920 * 120.63443 * 355.08596 * 9 7 4 11 11 C 1.53194 * 108.77742 * 126.40692 * 10 9 7 12 12 C 1.53046 * 109.30697 * 54.63900 * 11 10 9 13 13 C 1.53042 * 109.53680 * 298.62952 * 12 11 10 14 14 H 1.08996 * 109.49891 * 301.41414 * 13 12 11 15 15 C 1.50696 * 109.49384 * 181.32092 * 13 12 11 16 16 H 1.08006 * 119.99874 * 240.15902 * 15 13 12 17 17 C 1.37868 * 120.00390 * 60.16268 * 15 13 12 18 18 N 1.31520 * 120.00083 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00203 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47224 * 90.00268 * 19 17 15 21 21 H 1.48503 * 109.47425 * 210.00241 * 19 17 15 22 22 H 1.48496 * 109.47249 * 330.00399 * 19 17 15 23 23 C 1.46924 * 120.62906 * 175.10213 * 9 7 4 24 24 H 1.09002 * 109.46586 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47373 * 299.99760 * 1 2 3 26 26 H 1.08999 * 109.46780 * 60.00178 * 1 2 3 27 27 H 1.09000 * 109.46879 * 240.00297 * 2 1 3 28 28 H 1.08994 * 109.47200 * 120.00051 * 2 1 3 29 29 H 1.09002 * 109.47239 * 169.28418 * 5 4 3 30 30 H 1.08999 * 109.47217 * 289.28562 * 5 4 3 31 31 H 1.08998 * 109.47341 * 49.29050 * 5 4 3 32 32 H 1.08996 * 109.47232 * 310.51471 * 6 4 3 33 33 H 1.08998 * 109.46306 * 70.51642 * 6 4 3 34 34 H 1.08999 * 109.46990 * 190.51058 * 6 4 3 35 35 H 1.08996 * 109.58891 * 246.20129 * 10 9 7 36 36 H 1.09007 * 109.58466 * 6.62622 * 10 9 7 37 37 H 1.09004 * 109.49588 * 174.58308 * 11 10 9 38 38 H 1.08994 * 109.50178 * 294.65488 * 11 10 9 39 39 H 1.09000 * 109.46308 * 58.65716 * 12 11 10 40 40 H 1.08999 * 109.45682 * 178.61597 * 12 11 10 41 41 H 0.96998 * 119.99963 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.58761 * 353.38382 * 23 9 7 43 43 H 1.09005 * 109.58617 * 113.80252 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9957 0.7816 -1.2501 6 6 3.9967 0.7813 1.2484 7 6 3.8194 2.9163 0.0001 8 8 2.9613 3.7728 0.0313 9 7 5.1204 3.2666 -0.0339 10 6 6.1731 2.2441 0.0365 11 6 7.1199 2.4285 -1.1536 12 6 7.6412 3.8674 -1.1673 13 6 6.4672 4.8355 -1.3297 14 1 5.9363 4.6117 -2.2549 15 6 6.9845 6.2502 -1.3755 16 1 6.6654 6.9662 -0.6326 17 6 7.8651 6.6304 -2.3659 18 7 8.2533 5.7587 -3.2709 19 14 8.5059 8.3841 -2.4231 20 1 9.7523 8.4822 -1.6219 21 1 8.7914 8.7612 -3.8308 22 1 7.4833 9.3033 -1.8622 23 6 5.5129 4.6783 -0.1417 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.0526 1.0284 -1.3512 30 1 3.8818 -0.2986 -1.1599 31 1 3.4552 1.1318 -2.1295 32 1 3.4593 1.1339 2.1287 33 1 3.8795 -0.2987 1.1594 34 1 5.0546 1.0251 1.3467 35 1 6.7295 2.3559 0.9670 36 1 5.7225 1.2524 -0.0054 37 1 7.9588 1.7385 -1.0614 38 1 6.5831 2.2267 -2.0804 39 1 8.1569 4.0758 -0.2298 40 1 8.3344 3.9945 -1.9988 41 1 8.8731 6.0261 -3.9675 42 1 4.6268 5.2929 -0.3009 43 1 6.0156 4.9888 0.7744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397616155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -94.821786 kcal Electronic energy + Delta-G solvation = -22223.973880 eV Core-core repulsion = 19075.846941 eV Total energy + Delta-G solvation = -3148.126939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82612 -39.35769 -38.24207 -35.78270 -34.20368 -32.92043 -31.98750 -31.18484 -28.49488 -27.06741 -26.82069 -24.56839 -23.39972 -22.56345 -21.42732 -20.00720 -18.52219 -17.91853 -17.64309 -16.74547 -16.58995 -16.55455 -16.06731 -15.47125 -15.27020 -14.86488 -14.65876 -14.41542 -14.24692 -13.84867 -13.60088 -13.41514 -13.28435 -13.17852 -12.95083 -12.87973 -12.71248 -12.61653 -12.44406 -12.08982 -11.99380 -11.86093 -11.79597 -11.43718 -11.19447 -10.85333 -10.54758 -10.54319 -10.38563 -9.53379 -8.11364 -6.26321 1.40318 1.41836 1.51168 1.54950 1.81464 2.42575 2.87438 3.15254 3.37872 3.70146 3.89078 4.01755 4.19165 4.21522 4.29220 4.36093 4.40923 4.49239 4.50821 4.55297 4.59414 4.70453 4.76009 4.80364 4.85130 4.92554 4.94597 5.02558 5.07514 5.14994 5.20956 5.27698 5.31337 5.46300 5.54501 5.61295 5.92981 6.12416 6.21357 6.34107 6.52780 6.82480 7.16225 7.41740 8.92320 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.004595 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.483107 B = 6091.857999 C = 6390.430932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.392 6.392 4 C 0.104 3.896 5 C -0.190 4.190 6 C -0.187 4.187 7 C 0.510 3.490 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.084 3.916 11 C -0.130 4.130 12 C -0.105 4.105 13 C 0.042 3.958 14 H -0.014 1.014 15 C -0.540 4.540 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.911 5.911 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.130 3.870 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.047 0.953 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -17.762 7.492 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.312 6.312 4 C 0.061 3.939 5 C -0.247 4.247 6 C -0.244 4.244 7 C 0.299 3.701 8 O -0.467 6.467 9 N -0.331 5.331 10 C -0.036 4.036 11 C -0.168 4.168 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.004 0.996 15 C -0.578 4.578 16 H 0.069 0.931 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.008 3.992 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.654 -17.177 7.358 19.523 hybrid contribution 0.350 1.488 -0.518 1.614 sum -5.304 -15.689 6.841 17.918 Atomic orbital electron populations 1.21779 0.93291 1.03508 1.02167 1.22837 0.96015 0.82601 1.01892 1.88071 1.18926 1.28843 1.95361 1.21283 0.83229 0.90591 0.98772 1.22807 1.03213 1.02984 0.95659 1.22806 1.03437 1.02903 0.95238 1.20953 0.82138 0.91475 0.75575 1.90633 1.50614 1.53728 1.51761 1.48188 1.05290 1.08471 1.71173 1.22698 0.88880 0.92366 0.99682 1.21982 0.99372 0.97872 0.97542 1.21419 0.99003 0.93168 1.00756 1.18875 0.92571 0.94918 0.91347 0.99569 1.21428 1.27041 0.96629 1.12746 0.93130 1.25656 0.96384 1.01058 0.94928 1.70000 1.33892 1.35490 1.15647 0.85612 0.78763 0.80333 0.77279 1.19523 1.20880 1.19906 1.21592 0.97782 0.80407 0.99428 0.88178 0.92816 0.93233 0.91584 0.90954 0.88936 0.87276 0.92991 0.91876 0.87512 0.88386 0.89411 0.85149 0.88573 0.93272 0.94230 0.91778 0.92891 0.93436 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.04 0.81 5.89 71.98 0.42 1.24 16 3 O -0.39 -12.01 9.52 -129.95 -1.24 -13.25 16 4 C 0.10 2.89 0.85 -11.54 -0.01 2.88 16 5 C -0.19 -4.27 7.50 71.98 0.54 -3.73 16 6 C -0.19 -3.52 7.51 71.98 0.54 -2.98 16 7 C 0.51 19.96 6.56 87.66 0.58 20.53 16 8 O -0.59 -29.22 15.93 16.00 0.25 -28.97 16 9 N -0.60 -22.31 2.97 -818.91 -2.43 -24.74 16 10 C 0.08 2.29 3.92 86.36 0.34 2.63 16 11 C -0.13 -4.15 5.75 30.67 0.18 -3.97 16 12 C -0.11 -4.64 4.96 30.62 0.15 -4.48 16 13 C 0.04 2.14 2.25 -11.46 -0.03 2.12 16 14 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 15 C -0.54 -30.26 8.56 25.60 0.22 -30.04 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 17 C 0.02 1.06 5.30 84.65 0.45 1.50 16 18 N -0.91 -51.98 11.32 21.44 0.24 -51.73 16 19 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.13 5.92 5.64 86.36 0.49 6.41 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.05 6.67 -2.39 -0.02 1.03 16 28 H 0.07 1.05 6.66 -2.39 -0.02 1.03 16 29 H 0.09 2.06 3.90 -2.39 -0.01 2.05 16 30 H 0.11 1.54 7.01 -2.39 -0.02 1.53 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.23 7.00 -2.39 -0.02 1.21 16 34 H 0.10 1.63 4.73 -2.39 -0.01 1.62 16 35 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 36 H 0.13 2.58 2.84 -2.38 -0.01 2.57 16 37 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.05 1.68 7.43 -2.39 -0.02 1.67 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 3.25 6.05 -2.39 -0.01 3.23 16 41 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.05 2.42 7.04 -2.39 -0.02 2.41 16 43 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -73.79 322.39 4.46 -69.33 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.99 Total: 13.26 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.61 Total: -9.80 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.19 Total: -76.47 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.98 Total: -42.21 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.79 4.46 -69.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.488 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds