Wall clock time and date at job start Mon Mar 30 2020 01:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47018 * 2 1 4 4 C 1.42905 * 113.99823 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46548 * 60.00930 * 4 3 2 6 6 C 1.52997 * 109.47382 * 300.00884 * 4 3 2 7 7 C 1.50697 * 109.46662 * 180.02562 * 4 3 2 8 8 O 1.21277 * 120.00465 * 6.80263 * 7 4 3 9 9 N 1.34782 * 119.99458 * 186.79975 * 7 4 3 10 10 C 1.46921 * 120.63399 * 354.85860 * 9 7 4 11 11 C 1.53194 * 108.77384 * 233.58825 * 10 9 7 12 12 C 1.53036 * 109.31438 * 305.36168 * 11 10 9 13 13 C 1.53046 * 109.53709 * 61.36773 * 12 11 10 14 14 H 1.08996 * 109.49851 * 58.58480 * 13 12 11 15 15 C 1.50701 * 109.49567 * 178.68674 * 13 12 11 16 16 H 1.08001 * 120.00008 * 119.84061 * 15 13 12 17 17 C 1.37878 * 119.99754 * 299.83251 * 15 13 12 18 18 N 1.31516 * 119.99727 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99991 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47400 * 89.99834 * 19 17 15 21 21 H 1.48508 * 109.46833 * 209.99892 * 19 17 15 22 22 H 1.48495 * 109.47130 * 329.99473 * 19 17 15 23 23 C 1.46928 * 120.62784 * 174.83393 * 9 7 4 24 24 H 1.08993 * 109.47406 * 59.99353 * 1 2 3 25 25 H 1.09004 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46790 * 299.99286 * 1 2 3 27 27 H 1.08999 * 109.46790 * 240.00713 * 2 1 3 28 28 H 1.08993 * 109.47406 * 120.00646 * 2 1 3 29 29 H 1.09004 * 109.46773 * 172.91115 * 5 4 3 30 30 H 1.09001 * 109.47271 * 292.90020 * 5 4 3 31 31 H 1.08989 * 109.47494 * 52.90700 * 5 4 3 32 32 H 1.09006 * 109.46745 * 313.78967 * 6 4 3 33 33 H 1.08996 * 109.47650 * 73.78757 * 6 4 3 34 34 H 1.09000 * 109.46776 * 193.79444 * 6 4 3 35 35 H 1.08997 * 109.58963 * 113.79586 * 10 9 7 36 36 H 1.09002 * 109.70255 * 353.44282 * 10 9 7 37 37 H 1.09005 * 109.49232 * 185.41104 * 11 10 9 38 38 H 1.09002 * 109.49842 * 65.31659 * 11 10 9 39 39 H 1.09000 * 109.45789 * 301.34818 * 12 11 10 40 40 H 1.09001 * 109.45087 * 181.38051 * 12 11 10 41 41 H 0.96999 * 119.99813 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.58557 * 6.62971 * 23 9 7 43 43 H 1.08998 * 109.59019 * 246.20148 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9966 0.7814 -1.2485 6 6 3.9958 0.7814 1.2500 7 6 3.8194 2.9162 0.0012 8 8 2.9681 3.7709 0.1255 9 7 5.1130 3.2684 -0.1364 10 6 6.1673 2.2459 -0.1751 11 6 7.2214 2.5842 0.8838 12 6 7.7229 4.0128 0.6605 13 6 6.5573 4.9934 0.8087 14 1 6.1203 4.8917 1.8021 15 6 7.0582 6.4022 0.6205 16 1 6.6602 7.0152 -0.1746 17 6 8.0246 6.9086 1.4636 18 7 8.4614 8.1382 1.2997 19 14 8.7134 5.8481 2.8385 20 1 9.8940 5.0975 2.3407 21 1 9.1200 6.7136 3.9747 22 1 7.6736 4.8904 3.2932 23 6 5.4957 4.6824 -0.2511 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 5.0673 0.9750 -1.3138 30 1 3.8250 -0.2933 -1.1873 31 1 3.5009 1.1787 -2.1340 32 1 3.4199 1.0896 2.1227 33 1 3.9317 -0.3007 1.1362 34 1 5.0381 1.0719 1.3814 35 1 6.6306 2.2358 -1.1617 36 1 5.7376 1.2668 0.0368 37 1 8.0564 1.8884 0.8012 38 1 6.7782 2.5052 1.8765 39 1 8.1435 4.0974 -0.3415 40 1 8.4907 4.2473 1.3977 41 1 9.1410 8.4946 1.8930 42 1 4.6210 5.3120 -0.0879 43 1 5.9042 4.8711 -1.2439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397616156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:16 Heat of formation + Delta-G solvation = -67.104255 kcal Electronic energy + Delta-G solvation = -22297.434201 eV Core-core repulsion = 19150.509184 eV Total energy + Delta-G solvation = -3146.925017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60526 -38.27586 -36.84080 -34.31205 -32.73824 -31.72477 -30.92436 -30.14741 -27.68422 -25.73862 -25.14776 -23.67528 -21.82320 -21.46202 -20.05882 -18.76043 -16.86421 -16.78448 -16.47233 -15.83884 -15.52938 -14.99274 -14.56127 -14.18547 -14.11424 -13.68220 -13.48809 -13.19328 -12.81255 -12.69266 -12.56797 -12.42990 -12.32418 -12.18252 -12.14787 -11.91810 -11.28675 -11.22242 -11.11560 -10.86859 -10.62433 -10.33564 -10.16225 -9.84166 -9.67698 -9.49655 -9.22218 -8.98611 -8.57550 -8.10407 -6.10437 -4.10490 2.89399 2.98188 3.22338 3.35043 3.37124 3.86361 4.37516 4.43998 4.63123 4.76945 4.93606 5.01500 5.06810 5.15943 5.18690 5.20205 5.25842 5.31054 5.41544 5.47834 5.54175 5.68166 5.74154 5.77543 5.90820 5.94181 5.97881 6.00394 6.03332 6.17544 6.34270 6.51088 6.64786 6.70632 6.82080 7.05395 7.16413 7.44917 7.71679 7.80713 8.45772 8.53212 8.92995 9.51052 11.02620 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.004958 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.798070 B = 5645.910951 C = 5882.120723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.100 3.900 5 C -0.195 4.195 6 C -0.189 4.189 7 C 0.524 3.476 8 O -0.523 6.523 9 N -0.604 5.604 10 C 0.089 3.911 11 C -0.141 4.141 12 C -0.122 4.122 13 C 0.005 3.995 14 H 0.031 0.969 15 C -0.514 4.514 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.129 3.871 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.087 0.913 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 -20.661 -2.906 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.057 3.943 5 C -0.252 4.252 6 C -0.247 4.247 7 C 0.310 3.690 8 O -0.398 6.398 9 N -0.338 5.338 10 C -0.034 4.034 11 C -0.180 4.180 12 C -0.159 4.159 13 C -0.015 4.015 14 H 0.049 0.951 15 C -0.553 4.553 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.009 3.991 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.536 -19.878 -2.783 21.440 hybrid contribution 0.820 -0.761 0.796 1.373 sum -6.716 -20.639 -1.988 21.795 Atomic orbital electron populations 1.21723 0.93692 1.01924 1.03395 1.22520 0.95548 0.84391 1.00102 1.88111 1.18307 1.25777 1.94965 1.21272 0.83029 0.94009 0.96021 1.22863 1.03718 1.00988 0.97661 1.22715 1.03273 1.00943 0.97734 1.19862 0.82660 0.89350 0.77132 1.90695 1.49246 1.51622 1.48264 1.48170 1.04769 1.08917 1.71969 1.22291 0.89391 0.91831 0.99864 1.22053 0.97846 0.99346 0.98710 1.21986 0.99803 0.92682 1.01473 1.19473 0.91510 0.95342 0.95134 0.95122 1.20907 1.21968 0.95761 1.16618 0.90560 1.24980 0.96148 0.94820 0.97057 1.69893 1.30025 1.15045 1.38674 0.86829 0.79480 0.79988 0.81848 1.20583 1.22493 1.19115 1.21799 0.99503 0.78038 0.99803 0.91807 0.91248 0.91756 0.93205 0.93204 0.89117 0.91351 0.91066 0.90821 0.91243 0.89564 0.91240 0.88738 0.91601 0.92033 0.91855 0.93166 0.92588 0.89503 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.52 5.89 37.16 0.22 0.74 16 3 O -0.35 -5.26 9.53 -55.05 -0.52 -5.78 16 4 C 0.10 1.37 0.85 -91.77 -0.08 1.29 16 5 C -0.20 -2.04 7.63 37.16 0.28 -1.76 16 6 C -0.19 -2.13 7.38 37.16 0.27 -1.86 16 7 C 0.52 9.56 6.56 -10.98 -0.07 9.49 16 8 O -0.52 -11.91 15.93 -14.26 -0.23 -12.13 16 9 N -0.60 -10.51 2.96 -172.77 -0.51 -11.03 16 10 C 0.09 1.19 3.78 -3.71 -0.01 1.18 16 11 C -0.14 -2.15 5.90 -26.61 -0.16 -2.31 16 12 C -0.12 -2.44 4.66 -26.69 -0.12 -2.56 16 13 C 0.00 0.12 1.84 -91.65 -0.17 -0.05 16 14 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 15 C -0.51 -14.23 9.14 -34.44 -0.31 -14.54 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 19 Si 0.89 21.68 24.39 -169.99 -4.15 17.53 16 20 H -0.28 -6.51 6.86 56.52 0.39 -6.13 16 21 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 23 C 0.13 2.68 5.66 -3.71 -0.02 2.66 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.43 6.58 -51.93 -0.34 0.09 16 28 H 0.05 0.45 6.74 -51.93 -0.35 0.10 16 29 H 0.09 0.87 4.32 -51.93 -0.22 0.64 16 30 H 0.07 0.54 6.84 -51.93 -0.35 0.19 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.58 7.18 -51.93 -0.37 0.21 16 34 H 0.09 0.95 4.86 -51.93 -0.25 0.70 16 35 H 0.07 0.84 7.95 -51.93 -0.41 0.42 16 36 H 0.09 1.00 2.91 -51.93 -0.15 0.85 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 1.99 7.00 -51.93 -0.36 1.62 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -33.29 316.48 -6.52 -39.81 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.76 Total: 0.11 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.74 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.26 Total: -37.56 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.75 Total: -17.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.29 -6.52 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.295 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds