Wall clock time and date at job start Mon Mar 30 2020 01:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47018 * 2 1 4 4 C 1.42905 * 113.99823 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46548 * 60.00930 * 4 3 2 6 6 C 1.52997 * 109.47382 * 300.00884 * 4 3 2 7 7 C 1.50697 * 109.46662 * 180.02562 * 4 3 2 8 8 O 1.21277 * 120.00465 * 6.80263 * 7 4 3 9 9 N 1.34782 * 119.99458 * 186.79975 * 7 4 3 10 10 C 1.46921 * 120.63399 * 354.85860 * 9 7 4 11 11 C 1.53194 * 108.77384 * 233.58825 * 10 9 7 12 12 C 1.53036 * 109.31438 * 305.36168 * 11 10 9 13 13 C 1.53046 * 109.53709 * 61.36773 * 12 11 10 14 14 H 1.08996 * 109.49851 * 58.58480 * 13 12 11 15 15 C 1.50701 * 109.49567 * 178.68674 * 13 12 11 16 16 H 1.08001 * 120.00008 * 119.84061 * 15 13 12 17 17 C 1.37878 * 119.99754 * 299.83251 * 15 13 12 18 18 N 1.31516 * 119.99727 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99991 * 0.02562 * 17 15 13 20 20 H 1.48497 * 109.47400 * 89.99834 * 19 17 15 21 21 H 1.48508 * 109.46833 * 209.99892 * 19 17 15 22 22 H 1.48495 * 109.47130 * 329.99473 * 19 17 15 23 23 C 1.46928 * 120.62784 * 174.83393 * 9 7 4 24 24 H 1.08993 * 109.47406 * 59.99353 * 1 2 3 25 25 H 1.09004 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46790 * 299.99286 * 1 2 3 27 27 H 1.08999 * 109.46790 * 240.00713 * 2 1 3 28 28 H 1.08993 * 109.47406 * 120.00646 * 2 1 3 29 29 H 1.09004 * 109.46773 * 172.91115 * 5 4 3 30 30 H 1.09001 * 109.47271 * 292.90020 * 5 4 3 31 31 H 1.08989 * 109.47494 * 52.90700 * 5 4 3 32 32 H 1.09006 * 109.46745 * 313.78967 * 6 4 3 33 33 H 1.08996 * 109.47650 * 73.78757 * 6 4 3 34 34 H 1.09000 * 109.46776 * 193.79444 * 6 4 3 35 35 H 1.08997 * 109.58963 * 113.79586 * 10 9 7 36 36 H 1.09002 * 109.70255 * 353.44282 * 10 9 7 37 37 H 1.09005 * 109.49232 * 185.41104 * 11 10 9 38 38 H 1.09002 * 109.49842 * 65.31659 * 11 10 9 39 39 H 1.09000 * 109.45789 * 301.34818 * 12 11 10 40 40 H 1.09001 * 109.45087 * 181.38051 * 12 11 10 41 41 H 0.96999 * 119.99813 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.58557 * 6.62971 * 23 9 7 43 43 H 1.08998 * 109.59019 * 246.20148 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9966 0.7814 -1.2485 6 6 3.9958 0.7814 1.2500 7 6 3.8194 2.9162 0.0012 8 8 2.9681 3.7709 0.1255 9 7 5.1130 3.2684 -0.1364 10 6 6.1673 2.2459 -0.1751 11 6 7.2214 2.5842 0.8838 12 6 7.7229 4.0128 0.6605 13 6 6.5573 4.9934 0.8087 14 1 6.1203 4.8917 1.8021 15 6 7.0582 6.4022 0.6205 16 1 6.6602 7.0152 -0.1746 17 6 8.0246 6.9086 1.4636 18 7 8.4614 8.1382 1.2997 19 14 8.7134 5.8481 2.8385 20 1 9.8940 5.0975 2.3407 21 1 9.1200 6.7136 3.9747 22 1 7.6736 4.8904 3.2932 23 6 5.4957 4.6824 -0.2511 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 5.0673 0.9750 -1.3138 30 1 3.8250 -0.2933 -1.1873 31 1 3.5009 1.1787 -2.1340 32 1 3.4199 1.0896 2.1227 33 1 3.9317 -0.3007 1.1362 34 1 5.0381 1.0719 1.3814 35 1 6.6306 2.2358 -1.1617 36 1 5.7376 1.2668 0.0368 37 1 8.0564 1.8884 0.8012 38 1 6.7782 2.5052 1.8765 39 1 8.1435 4.0974 -0.3415 40 1 8.4907 4.2473 1.3977 41 1 9.1410 8.4946 1.8930 42 1 4.6210 5.3120 -0.0879 43 1 5.9042 4.8711 -1.2439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397616156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:16 Heat of formation + Delta-G solvation = -90.398371 kcal Electronic energy + Delta-G solvation = -22298.444309 eV Core-core repulsion = 19150.509184 eV Total energy + Delta-G solvation = -3147.935126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86127 -39.44266 -38.33337 -35.81041 -34.30518 -33.21944 -32.17013 -31.34000 -28.48780 -27.28029 -26.86045 -24.66793 -23.27059 -22.63859 -21.42829 -20.18044 -18.89314 -17.91970 -17.81519 -16.90428 -16.66231 -16.46004 -16.08414 -15.62650 -15.34080 -15.06162 -14.77215 -14.51244 -14.26589 -14.07551 -13.71596 -13.58752 -13.44195 -13.22062 -13.15208 -12.94994 -12.74599 -12.51830 -12.19709 -12.12473 -12.05650 -11.97485 -11.76370 -11.50935 -11.20376 -11.02200 -10.69434 -10.54726 -10.50473 -9.59375 -8.32580 -6.38068 1.27040 1.35691 1.45693 1.53603 1.75248 2.30661 2.86318 3.02325 3.36127 3.70218 3.88147 3.92221 4.02311 4.17805 4.21205 4.28052 4.35534 4.40757 4.47122 4.52488 4.54909 4.60475 4.69092 4.72016 4.78567 4.85619 4.93214 4.95556 5.02954 5.08228 5.10460 5.17262 5.23825 5.28021 5.36883 5.40330 5.63859 5.72881 6.19379 6.24303 6.48909 6.68218 7.13792 7.27639 8.84274 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.004958 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.798070 B = 5645.910951 C = 5882.120723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.393 6.393 4 C 0.103 3.897 5 C -0.191 4.191 6 C -0.186 4.186 7 C 0.511 3.489 8 O -0.586 6.586 9 N -0.602 5.602 10 C 0.083 3.917 11 C -0.136 4.136 12 C -0.122 4.122 13 C 0.009 3.991 14 H 0.011 0.989 15 C -0.524 4.524 16 H 0.032 0.968 17 C 0.013 3.987 18 N -0.949 5.949 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.302 1.302 22 H -0.253 1.253 23 C 0.138 3.862 24 H 0.051 0.949 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.267 0.733 42 H 0.050 0.950 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -25.882 -2.642 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.313 6.313 4 C 0.060 3.940 5 C -0.247 4.247 6 C -0.243 4.243 7 C 0.300 3.700 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.038 4.038 11 C -0.174 4.174 12 C -0.159 4.159 13 C -0.011 4.011 14 H 0.029 0.971 15 C -0.563 4.563 16 H 0.050 0.950 17 C -0.184 4.184 18 N -0.589 5.589 19 Si 0.782 3.218 20 H -0.178 1.178 21 H -0.230 1.230 22 H -0.177 1.177 23 C 0.016 3.984 24 H 0.070 0.930 25 H 0.118 0.882 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.385 -25.158 -2.541 26.079 hybrid contribution 0.355 0.964 0.641 1.211 sum -6.030 -24.194 -1.899 25.006 Atomic orbital electron populations 1.21781 0.93451 1.03474 1.02136 1.22825 0.95894 0.82575 1.01936 1.88077 1.19005 1.28849 1.95374 1.21312 0.83255 0.90407 0.98987 1.22876 1.03976 1.02721 0.95151 1.22739 1.02857 1.03154 0.95587 1.20996 0.82057 0.91496 0.75470 1.90658 1.50967 1.53898 1.50984 1.48196 1.05941 1.08010 1.71314 1.22722 0.88064 0.92087 1.00889 1.22059 0.99676 0.96585 0.99066 1.21859 0.97626 0.95006 1.01411 1.19344 0.93404 0.93763 0.94582 0.97079 1.21226 1.21651 0.98044 1.15331 0.94989 1.25896 0.96551 0.96108 0.99894 1.70055 1.31226 1.17290 1.40319 0.85737 0.79723 0.78334 0.77959 1.17804 1.23041 1.17740 1.21350 0.97363 0.80502 0.99202 0.92958 0.88230 0.93189 0.91017 0.91390 0.87801 0.87669 0.92325 0.92516 0.87129 0.89023 0.88791 0.84834 0.87072 0.92313 0.91424 0.94347 0.92441 0.93156 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.04 0.75 5.89 71.98 0.42 1.17 16 3 O -0.39 -11.17 9.53 -130.03 -1.24 -12.41 16 4 C 0.10 2.56 0.85 -11.54 -0.01 2.55 16 5 C -0.19 -3.13 7.63 71.98 0.55 -2.58 16 6 C -0.19 -3.41 7.38 71.98 0.53 -2.88 16 7 C 0.51 18.56 6.56 87.66 0.57 19.14 16 8 O -0.59 -28.04 15.93 15.93 0.25 -27.79 16 9 N -0.60 -20.34 2.96 -818.90 -2.42 -22.76 16 10 C 0.08 1.86 3.78 86.36 0.33 2.19 16 11 C -0.14 -3.50 5.90 30.67 0.18 -3.32 16 12 C -0.12 -4.58 4.66 30.62 0.14 -4.44 16 13 C 0.01 0.41 1.84 -11.46 -0.02 0.39 16 14 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 15 C -0.52 -30.45 9.14 25.60 0.23 -30.22 16 16 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 17 C 0.01 0.74 5.45 84.65 0.46 1.21 16 18 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 19 Si 0.96 44.85 24.39 68.60 1.67 46.53 16 20 H -0.25 -10.76 6.86 99.48 0.68 -10.08 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 23 C 0.14 5.96 5.66 86.36 0.49 6.45 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.92 6.58 -2.39 -0.02 0.90 16 28 H 0.07 0.92 6.74 -2.39 -0.02 0.90 16 29 H 0.10 1.40 4.32 -2.39 -0.01 1.39 16 30 H 0.10 0.99 6.84 -2.39 -0.02 0.98 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.11 1.13 7.18 -2.39 -0.02 1.12 16 34 H 0.09 1.56 4.86 -2.39 -0.01 1.55 16 35 H 0.09 1.76 7.95 -2.39 -0.02 1.74 16 36 H 0.13 2.03 2.91 -2.39 -0.01 2.03 16 37 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.05 2.50 7.00 -2.39 -0.02 2.48 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -80.50 316.48 4.10 -76.40 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.92 Total: 11.82 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.62 Total: -12.06 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.13 Total: -82.49 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.99 Total: -40.20 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.53 kcal Total: -80.50 4.10 -76.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.998 kcal (2) G-P(sol) polarization free energy of solvation -80.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds