Wall clock time and date at job start Mon Mar 30 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46898 * 2 1 4 4 C 1.42905 * 113.99526 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46900 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47351 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47497 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99508 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.62932 * 359.97291 * 9 7 6 11 11 C 1.53187 * 108.77625 * 126.41524 * 10 9 7 12 12 C 1.53046 * 109.31363 * 54.63376 * 11 10 9 13 13 C 1.53046 * 109.53579 * 298.63645 * 12 11 10 14 14 H 1.08995 * 109.49499 * 301.40973 * 13 12 11 15 15 C 1.50700 * 109.49623 * 181.31259 * 13 12 11 16 16 H 1.07996 * 120.00534 * 240.00313 * 15 13 12 17 17 C 1.37878 * 119.99817 * 59.99951 * 15 13 12 18 18 N 1.31514 * 120.00036 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00058 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47346 * 90.00193 * 19 17 15 21 21 H 1.48507 * 109.47138 * 210.00292 * 19 17 15 22 22 H 1.48503 * 109.47135 * 329.99794 * 19 17 15 23 23 C 1.46921 * 120.63131 * 179.97438 * 9 7 6 24 24 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47065 * 299.99929 * 1 2 3 26 26 H 1.09002 * 109.47054 * 59.99774 * 1 2 3 27 27 H 1.09003 * 109.47065 * 240.00071 * 2 1 3 28 28 H 1.09002 * 109.47054 * 120.00226 * 2 1 3 29 29 H 1.08996 * 109.47131 * 60.00519 * 4 3 2 30 30 H 1.08997 * 109.46972 * 299.99639 * 4 3 2 31 31 H 1.09003 * 109.47401 * 60.00110 * 5 4 3 32 32 H 1.08995 * 109.47279 * 300.00363 * 5 4 3 33 33 H 1.09001 * 109.47130 * 60.00090 * 6 5 4 34 34 H 1.09003 * 109.47096 * 300.00170 * 6 5 4 35 35 H 1.09000 * 109.58351 * 246.20638 * 10 9 7 36 36 H 1.09002 * 109.58642 * 6.48295 * 10 9 7 37 37 H 1.09001 * 109.49833 * 294.68424 * 11 10 9 38 38 H 1.08996 * 109.49835 * 174.58430 * 11 10 9 39 39 H 1.08993 * 109.46296 * 178.61734 * 12 11 10 40 40 H 1.09000 * 109.45696 * 58.65290 * 12 11 10 41 41 H 0.97001 * 119.99878 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.58905 * 113.79723 * 23 9 7 43 43 H 1.09008 * 109.58585 * 353.36923 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0592 -0.0012 7 6 5.7393 4.5152 -0.0011 8 8 4.8807 5.3720 -0.0016 9 7 7.0407 4.8654 -0.0016 10 6 8.0921 3.8390 -0.0016 11 6 9.0460 4.1102 -1.1691 12 6 9.5687 5.5454 -1.0727 13 6 8.3964 6.5246 -1.1692 14 1 7.8707 6.3709 -2.1115 15 6 8.9153 7.9381 -1.1066 16 1 8.5907 8.5980 -0.3157 17 6 9.8046 8.3888 -2.0590 18 7 10.1996 7.5854 -3.0223 19 14 10.4483 10.1406 -1.9810 20 1 11.6882 10.1765 -1.1647 21 1 10.7459 10.6202 -3.3546 22 1 9.4225 11.0179 -1.3619 23 6 7.4352 6.2807 -0.0021 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8333 0.9768 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.4230 3.4222 0.8888 32 1 3.4223 3.4216 -0.8911 33 1 5.7535 2.5753 -0.8909 34 1 5.7534 2.5760 0.8891 35 1 8.6432 3.8805 0.9379 36 1 7.6407 2.8536 -0.1171 37 1 8.5141 3.9793 -2.1115 38 1 9.8835 3.4142 -1.1238 39 1 10.2667 5.7332 -1.8885 40 1 10.0790 5.6827 -0.1194 41 1 10.8249 7.9026 -3.6926 42 1 7.9327 6.5217 0.9372 43 1 6.5506 6.9065 -0.1206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397820634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:18 Heat of formation + Delta-G solvation = -108.292128 kcal Electronic energy + Delta-G solvation = -20758.195695 eV Core-core repulsion = 17609.484638 eV Total energy + Delta-G solvation = -3148.711057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68134 -38.24737 -36.82088 -33.91943 -33.41886 -31.41548 -31.18339 -30.17789 -27.05427 -25.06242 -24.23298 -23.02164 -21.89187 -21.55675 -19.70349 -18.25926 -17.05144 -16.61829 -16.57738 -16.12784 -15.38045 -15.08629 -14.65552 -14.35455 -14.11667 -13.51765 -13.28042 -13.03390 -12.88585 -12.69453 -12.54053 -12.08696 -12.02436 -11.79685 -11.70595 -11.62254 -11.07397 -10.98194 -10.86242 -10.82615 -10.72889 -10.30049 -9.96317 -9.81483 -9.77438 -9.47460 -9.26167 -8.82893 -8.39074 -7.88909 -6.02443 -4.09449 3.07025 3.29279 3.30307 3.36459 3.40808 3.72139 4.42425 4.73500 4.76452 4.89855 4.90963 5.06352 5.11691 5.19482 5.26554 5.32253 5.33356 5.40636 5.45655 5.62303 5.62990 5.63577 5.77899 5.84124 6.09901 6.11248 6.28031 6.32449 6.40215 6.47917 6.66295 6.80922 6.97851 7.04473 7.16240 7.32798 7.68643 7.91484 8.02700 8.07189 8.37253 8.67053 8.94350 9.55465 11.03109 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040682 B = 0.003152 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.101962 B = 8880.142405 C = 9188.115275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.064 3.936 5 C -0.103 4.103 6 C -0.136 4.136 7 C 0.508 3.492 8 O -0.550 6.550 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.113 4.113 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.117 3.883 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.054 0.946 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.129 -16.661 5.831 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.013 4.013 5 C -0.141 4.141 6 C -0.176 4.176 7 C 0.296 3.704 8 O -0.429 6.429 9 N -0.337 5.337 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.151 4.151 13 C 0.020 3.980 14 H 0.047 0.953 15 C -0.552 4.552 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.004 4.004 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.584 -16.038 5.675 19.526 hybrid contribution 0.819 0.562 -0.054 0.995 sum -8.765 -15.476 5.621 18.653 Atomic orbital electron populations 1.21747 0.93832 1.02090 1.03256 1.22445 0.95603 0.84032 0.99925 1.87909 1.21361 1.26152 1.95404 1.22525 0.81059 0.97732 0.99980 1.21217 0.93743 0.94159 1.04953 1.21557 0.96976 0.95059 1.04030 1.20435 0.82463 0.90848 0.76677 1.90674 1.49085 1.52298 1.50825 1.48320 1.04890 1.08816 1.71659 1.21744 0.89739 0.90330 0.99596 1.22003 0.97763 1.00386 0.97188 1.21636 1.00925 0.90545 1.01986 1.18968 0.91474 0.94730 0.92781 0.95284 1.21083 1.26042 0.96523 1.11558 0.92472 1.24942 0.96276 0.97494 0.95156 1.69872 1.33312 1.35271 1.14383 0.86573 0.79199 0.84879 0.77240 1.20696 1.21240 1.19843 1.21980 0.99708 0.78474 1.00271 0.91225 0.91831 0.91791 0.93491 0.93545 0.93311 0.93403 0.90410 0.90274 0.88979 0.89204 0.91971 0.91125 0.92378 0.92476 0.88622 0.94591 0.92983 0.92775 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.39 -4.64 10.34 -35.23 -0.36 -5.00 16 4 C 0.06 0.66 5.94 37.16 0.22 0.88 16 5 C -0.10 -1.31 4.87 -26.73 -0.13 -1.44 16 6 C -0.14 -1.69 4.05 -27.88 -0.11 -1.81 16 7 C 0.51 9.09 7.70 -10.99 -0.08 9.00 16 8 O -0.55 -11.99 15.40 5.55 0.09 -11.90 16 9 N -0.60 -11.11 2.97 -172.79 -0.51 -11.63 16 10 C 0.11 1.63 6.34 -3.71 -0.02 1.61 16 11 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 12 C -0.11 -2.51 4.96 -26.68 -0.13 -2.65 16 13 C 0.04 0.98 2.25 -91.67 -0.21 0.77 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.99 11.31 55.43 0.63 -24.37 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.12 2.54 5.65 -3.73 -0.02 2.52 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 34 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.81 5.93 -51.93 -0.31 0.51 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.86 7.01 -51.92 -0.36 1.50 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -30.99 342.24 -8.12 -39.11 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.68 Total: -1.26 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.41 Total: -6.25 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.11 Total: -35.99 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.28 Total: -16.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.99 -8.12 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397820634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.185 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds