Wall clock time and date at job start Mon Mar 30 2020 01:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46886 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 14 14 H 1.09005 * 109.49595 * 58.58664 * 13 12 11 15 15 C 1.50705 * 109.52169 * 178.66288 * 13 12 11 16 16 H 1.08006 * 119.99596 * 119.85554 * 15 13 12 17 17 C 1.37871 * 120.00476 * 299.85549 * 15 13 12 18 18 N 1.31513 * 120.00380 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99773 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47424 * 89.99889 * 19 17 15 21 21 H 1.48501 * 109.47184 * 210.00145 * 19 17 15 22 22 H 1.48498 * 109.47303 * 329.99579 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 H 1.08999 * 109.47384 * 60.00098 * 1 2 3 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 27 27 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 28 28 H 1.09000 * 109.46950 * 120.00215 * 2 1 3 29 29 H 1.09001 * 109.46621 * 60.00032 * 4 3 2 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.46652 * 60.00333 * 5 4 3 32 32 H 1.08992 * 109.47514 * 300.00423 * 5 4 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 35 35 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 36 36 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 37 37 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 38 38 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 39 39 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 40 40 H 1.09006 * 109.45861 * 181.25777 * 12 11 10 41 41 H 0.96996 * 119.99984 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.58607 * 246.15487 * 23 9 7 43 43 H 1.09000 * 109.58547 * 6.57598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3506 3.0592 0.0012 7 6 5.7391 4.5152 0.0011 8 8 4.8807 5.3719 -0.0003 9 7 7.0406 4.8654 0.0016 10 6 8.0919 3.8390 0.0085 11 6 9.0449 4.1107 1.1711 12 6 9.5676 5.5457 1.0747 13 6 8.3953 6.5250 1.1698 14 1 7.8688 6.3716 2.1119 15 6 8.9137 7.9387 1.1078 16 1 8.5914 8.5977 0.3152 17 6 9.7994 8.3908 2.0628 18 7 10.2514 9.6246 2.0089 19 14 10.3575 7.2507 3.4333 20 1 11.5777 6.5211 3.0043 21 1 10.6595 8.0485 4.6488 22 1 9.2789 6.2760 3.7364 23 6 7.4351 6.2807 0.0021 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4222 3.4224 0.8895 32 1 3.4230 3.4215 -0.8904 33 1 5.7526 2.5762 0.8918 34 1 5.7541 2.5751 -0.8882 35 1 7.6406 2.8543 0.1302 36 1 8.6450 3.8762 -0.9300 37 1 9.8825 3.4145 1.1267 38 1 8.5122 3.9800 2.1131 39 1 10.0789 5.6828 0.1217 40 1 10.2651 5.7338 1.8911 41 1 10.8748 9.9425 2.6806 42 1 7.9334 6.5215 -0.9370 43 1 6.5504 6.9065 0.1196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397820636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:20 Heat of formation + Delta-G solvation = -99.912335 kcal Electronic energy + Delta-G solvation = -20858.106399 eV Core-core repulsion = 17709.758717 eV Total energy + Delta-G solvation = -3148.347682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85897 -38.31542 -37.10853 -34.00908 -33.44417 -31.79045 -31.30632 -30.55376 -27.28677 -25.06455 -24.64297 -23.06585 -21.86413 -21.69246 -19.84341 -18.48446 -17.15069 -16.76050 -16.65615 -16.56507 -15.50605 -15.26459 -14.78103 -14.45101 -14.20223 -13.80669 -13.50046 -13.11148 -13.05038 -12.89127 -12.54272 -12.49328 -12.22093 -11.99382 -11.77107 -11.70271 -11.39479 -11.17011 -11.08973 -10.92696 -10.68290 -10.33927 -10.16549 -9.85011 -9.82725 -9.59056 -9.30761 -9.01952 -8.57796 -8.09324 -6.10618 -4.10696 2.94629 3.20780 3.22334 3.34738 3.36903 3.60446 4.37280 4.62615 4.72146 4.83325 4.84043 4.98782 5.04492 5.08611 5.17529 5.20434 5.23664 5.30410 5.33344 5.39263 5.52074 5.54359 5.59424 5.80609 5.86089 5.96308 6.02041 6.05164 6.18928 6.21527 6.34592 6.52021 6.67214 6.72059 6.84959 6.99244 7.12926 7.44868 7.71432 7.84700 8.45598 8.54316 8.92780 9.50875 11.02414 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.003372 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.359373 B = 8302.663863 C = 8464.927466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.064 3.936 5 C -0.103 4.103 6 C -0.137 4.137 7 C 0.509 3.491 8 O -0.545 6.545 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.140 4.140 12 C -0.123 4.123 13 C 0.005 3.995 14 H 0.030 0.970 15 C -0.514 4.514 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.266 1.266 23 C 0.127 3.873 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.062 0.938 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -21.729 -4.098 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.013 4.013 5 C -0.141 4.141 6 C -0.177 4.177 7 C 0.297 3.703 8 O -0.423 6.423 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.178 4.178 12 C -0.160 4.160 13 C -0.015 4.015 14 H 0.048 0.952 15 C -0.552 4.552 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.006 3.994 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.264 -20.963 -4.026 23.686 hybrid contribution 0.895 -0.843 0.849 1.494 sum -9.369 -21.807 -3.178 23.946 Atomic orbital electron populations 1.21746 0.93796 1.02119 1.03281 1.22446 0.95636 0.83984 0.99922 1.87910 1.21297 1.26196 1.95400 1.22517 0.81141 0.97663 0.99967 1.21221 0.93627 0.94247 1.05036 1.21567 0.97130 0.94901 1.04069 1.20452 0.82349 0.90930 0.76556 1.90691 1.48993 1.52265 1.50328 1.48349 1.04990 1.08715 1.72154 1.21600 0.89624 0.90715 0.99267 1.21938 0.98501 0.99261 0.98137 1.21990 0.99829 0.92718 1.01477 1.19464 0.92045 0.95514 0.94464 0.95217 1.20911 1.26453 0.94851 1.13030 0.90584 1.24987 0.95772 0.94931 0.97386 1.69892 1.32266 1.15912 1.35567 0.86819 0.79196 0.80521 0.81529 1.20605 1.22509 1.19131 1.21755 0.99542 0.78506 0.99572 0.91807 0.91205 0.91781 0.93524 0.93504 0.93388 0.93353 0.90262 0.90300 0.89005 0.89062 0.90637 0.91470 0.91695 0.92150 0.91909 0.93204 0.92591 0.91983 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.43 10.34 -35.23 -0.36 -4.80 16 4 C 0.06 0.62 5.94 37.16 0.22 0.84 16 5 C -0.10 -1.24 4.87 -26.73 -0.13 -1.37 16 6 C -0.14 -1.55 4.05 -27.88 -0.11 -1.66 16 7 C 0.51 8.51 7.70 -10.98 -0.08 8.42 16 8 O -0.54 -11.33 15.39 5.56 0.09 -11.24 16 9 N -0.61 -10.36 2.98 -173.05 -0.52 -10.88 16 10 C 0.11 1.48 6.31 -3.93 -0.02 1.45 16 11 C -0.14 -2.15 6.06 -26.83 -0.16 -2.31 16 12 C -0.12 -2.47 4.66 -26.69 -0.12 -2.60 16 13 C 0.00 0.11 1.84 -91.67 -0.17 -0.06 16 14 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 15 C -0.51 -14.26 9.14 -34.44 -0.31 -14.58 16 16 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 19 Si 0.89 21.75 24.39 -169.99 -4.15 17.60 16 20 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 23 C 0.13 2.63 5.66 -3.74 -0.02 2.61 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 34 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 35 H 0.08 0.74 5.93 -51.93 -0.31 0.44 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.95 7.01 -51.93 -0.36 1.59 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -32.79 335.43 -7.05 -39.84 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.54 Total: -1.72 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.39 Total: -7.29 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.26 Total: -37.45 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.28 Total: -16.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.15 Total: 17.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.79 -7.05 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397820636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.072 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds