Wall clock time and date at job start Mon Mar 30 2020 01:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47230 * 2 1 4 4 C 1.42898 * 114.00186 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46886 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 14 14 H 1.09005 * 109.49595 * 58.58664 * 13 12 11 15 15 C 1.50705 * 109.52169 * 178.66288 * 13 12 11 16 16 H 1.08006 * 119.99596 * 119.85554 * 15 13 12 17 17 C 1.37871 * 120.00476 * 299.85549 * 15 13 12 18 18 N 1.31513 * 120.00380 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99773 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47424 * 89.99889 * 19 17 15 21 21 H 1.48501 * 109.47184 * 210.00145 * 19 17 15 22 22 H 1.48498 * 109.47303 * 329.99579 * 19 17 15 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 H 1.08999 * 109.47384 * 60.00098 * 1 2 3 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47349 * 300.00228 * 1 2 3 27 27 H 1.09001 * 109.47081 * 240.00210 * 2 1 3 28 28 H 1.09000 * 109.46950 * 120.00215 * 2 1 3 29 29 H 1.09001 * 109.46621 * 60.00032 * 4 3 2 30 30 H 1.09002 * 109.47259 * 300.00293 * 4 3 2 31 31 H 1.09001 * 109.46652 * 60.00333 * 5 4 3 32 32 H 1.08992 * 109.47514 * 300.00423 * 5 4 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 35 35 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 36 36 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 37 37 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 38 38 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 39 39 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 40 40 H 1.09006 * 109.45861 * 181.25777 * 12 11 10 41 41 H 0.96996 * 119.99984 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.58607 * 246.15487 * 23 9 7 43 43 H 1.09000 * 109.58547 * 6.57598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3506 3.0592 0.0012 7 6 5.7391 4.5152 0.0011 8 8 4.8807 5.3719 -0.0003 9 7 7.0406 4.8654 0.0016 10 6 8.0919 3.8390 0.0085 11 6 9.0449 4.1107 1.1711 12 6 9.5676 5.5457 1.0747 13 6 8.3953 6.5250 1.1698 14 1 7.8688 6.3716 2.1119 15 6 8.9137 7.9387 1.1078 16 1 8.5914 8.5977 0.3152 17 6 9.7994 8.3908 2.0628 18 7 10.2514 9.6246 2.0089 19 14 10.3575 7.2507 3.4333 20 1 11.5777 6.5211 3.0043 21 1 10.6595 8.0485 4.6488 22 1 9.2789 6.2760 3.7364 23 6 7.4351 6.2807 0.0021 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4222 3.4224 0.8895 32 1 3.4230 3.4215 -0.8904 33 1 5.7526 2.5762 0.8918 34 1 5.7541 2.5751 -0.8882 35 1 7.6406 2.8543 0.1302 36 1 8.6450 3.8762 -0.9300 37 1 9.8825 3.4145 1.1267 38 1 8.5122 3.9800 2.1131 39 1 10.0789 5.6828 0.1217 40 1 10.2651 5.7338 1.8911 41 1 10.8748 9.9425 2.6806 42 1 7.9334 6.5215 -0.9370 43 1 6.5504 6.9065 0.1196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397820636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:20 Heat of formation + Delta-G solvation = -122.736646 kcal Electronic energy + Delta-G solvation = -20859.096135 eV Core-core repulsion = 17709.758717 eV Total energy + Delta-G solvation = -3149.337419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19414 -39.09460 -38.53587 -35.40060 -34.80796 -33.49949 -32.31285 -31.78903 -28.42940 -26.79608 -25.96543 -23.64849 -23.21087 -22.83478 -21.37293 -19.81976 -18.86175 -18.18518 -17.53499 -17.40764 -16.77757 -16.53604 -16.38486 -15.43989 -15.33791 -15.20841 -14.90396 -14.73849 -14.16360 -14.09215 -13.92545 -13.50566 -13.46241 -13.05478 -12.92866 -12.72082 -12.48389 -12.40898 -12.32621 -12.08505 -11.88744 -11.84276 -11.73880 -11.50156 -11.27096 -11.09462 -10.69780 -10.66503 -10.49386 -9.52916 -8.33050 -6.38460 1.26751 1.34883 1.45165 1.68141 2.06552 2.30069 2.79644 3.01753 3.59079 3.98437 4.01075 4.08840 4.12337 4.19040 4.20303 4.31681 4.34795 4.44760 4.51843 4.54774 4.55344 4.56565 4.61946 4.74544 4.78574 4.88605 4.93520 4.98430 5.04077 5.12871 5.14999 5.16077 5.25550 5.31463 5.39197 5.44919 5.65395 5.75179 6.24434 6.35178 6.56556 6.68048 7.23801 7.27843 8.83788 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.003372 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.359373 B = 8302.663863 C = 8464.927466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.422 6.422 4 C 0.067 3.933 5 C -0.101 4.101 6 C -0.121 4.121 7 C 0.500 3.500 8 O -0.600 6.600 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.123 4.123 13 C 0.008 3.992 14 H 0.012 0.988 15 C -0.524 4.524 16 H 0.031 0.969 17 C 0.011 3.989 18 N -0.949 5.949 19 Si 0.958 3.042 20 H -0.255 1.255 21 H -0.302 1.302 22 H -0.252 1.252 23 C 0.137 3.863 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.267 0.733 42 H 0.060 0.940 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -26.873 -3.837 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.342 6.342 4 C -0.009 4.009 5 C -0.140 4.140 6 C -0.161 4.161 7 C 0.290 3.710 8 O -0.481 6.481 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.012 4.012 14 H 0.030 0.970 15 C -0.562 4.562 16 H 0.049 0.951 17 C -0.186 4.186 18 N -0.589 5.589 19 Si 0.784 3.216 20 H -0.181 1.181 21 H -0.230 1.230 22 H -0.176 1.176 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.416 -26.163 -3.786 28.062 hybrid contribution 0.549 0.867 0.687 1.235 sum -8.867 -25.296 -3.099 26.984 Atomic orbital electron populations 1.21790 0.93527 1.03329 1.02398 1.22657 0.96005 0.82761 1.01171 1.87875 1.22377 1.28314 1.95682 1.22521 0.80690 0.95727 1.01971 1.21152 0.94288 0.95926 1.02591 1.21590 0.96518 0.90616 1.07347 1.21552 0.81462 0.93067 0.74916 1.90674 1.50488 1.54410 1.52549 1.48421 1.06406 1.07533 1.71961 1.21992 0.88632 0.91527 0.99359 1.21934 1.00226 0.96129 0.98956 1.21873 0.97832 0.95364 1.00999 1.19340 0.93691 0.93686 0.94439 0.96957 1.21249 1.26174 0.97093 1.11728 0.95086 1.25920 0.95912 0.96549 1.00264 1.70055 1.33578 1.18256 1.37027 0.85710 0.79837 0.78532 0.77502 1.18085 1.23032 1.17577 1.21260 0.97445 0.81363 0.98496 0.92626 0.88949 0.92747 0.92092 0.92277 0.91062 0.91413 0.93111 0.92623 0.85775 0.85112 0.85552 0.89691 0.87615 0.92334 0.91816 0.94535 0.92458 0.92167 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.42 -8.90 10.34 -148.98 -1.54 -10.44 16 4 C 0.07 1.08 5.94 71.98 0.43 1.51 16 5 C -0.10 -2.25 4.87 30.59 0.15 -2.10 16 6 C -0.12 -2.25 4.05 29.85 0.12 -2.13 16 7 C 0.50 15.96 7.70 87.66 0.67 16.63 16 8 O -0.60 -25.73 15.39 -3.02 -0.05 -25.78 16 9 N -0.61 -19.57 2.98 -819.81 -2.44 -22.01 16 10 C 0.11 2.26 6.31 86.22 0.54 2.80 16 11 C -0.13 -3.45 6.06 30.53 0.19 -3.26 16 12 C -0.12 -4.68 4.66 30.62 0.14 -4.54 16 13 C 0.01 0.38 1.84 -11.48 -0.02 0.36 16 14 H 0.01 0.61 7.20 -2.38 -0.02 0.60 16 15 C -0.52 -30.51 9.14 25.60 0.23 -30.27 16 16 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 17 C 0.01 0.63 5.45 84.65 0.46 1.09 16 18 N -0.95 -60.20 13.96 21.44 0.30 -59.90 16 19 Si 0.96 45.05 24.39 68.60 1.67 46.72 16 20 H -0.26 -10.99 6.86 99.48 0.68 -10.31 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 23 C 0.14 5.83 5.66 86.35 0.49 6.32 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.12 1.60 7.68 -2.39 -0.02 1.59 16 34 H 0.13 1.49 7.95 -2.39 -0.02 1.47 16 35 H 0.13 1.50 5.93 -2.39 -0.01 1.48 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.04 1.48 3.27 -2.38 -0.01 1.47 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 43 H 0.05 2.47 7.01 -2.39 -0.02 2.45 16 Total: -1.00 -79.00 335.43 3.45 -75.55 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.88 Total: 9.46 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.63 Total: -13.61 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.14 Total: -81.91 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.59 Total: -36.21 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -79.00 3.45 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397820636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.187 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds