Wall clock time and date at job start Mon Mar 30 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47324 * 2 1 4 4 C 1.34224 * 117.00406 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99706 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00178 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47336 * 314.55274 * 6 4 3 8 8 C 1.53004 * 109.47006 * 74.55204 * 6 4 3 9 9 N 1.46898 * 109.47272 * 194.54944 * 6 4 3 10 10 C 1.46856 * 110.99950 * 287.79715 * 9 6 4 11 11 C 1.53032 * 109.52130 * 174.15953 * 10 9 6 12 12 C 1.53124 * 109.28131 * 59.17946 * 11 10 9 13 13 C 1.52995 * 109.52456 * 182.44175 * 12 11 10 14 14 C 1.50702 * 109.47116 * 185.00058 * 13 12 11 15 15 H 1.08007 * 119.99903 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00080 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47197 * 60.00485 * 18 16 14 20 20 H 1.48497 * 109.46897 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47331 * 300.00150 * 18 16 14 22 22 C 1.53124 * 109.15863 * 302.34589 * 12 11 10 23 23 C 1.46842 * 111.00111 * 163.58542 * 9 6 4 24 24 H 1.09000 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47377 * 300.00229 * 1 2 3 26 26 H 1.09002 * 109.47250 * 60.00220 * 1 2 3 27 27 H 1.09001 * 109.47377 * 239.99771 * 2 1 3 28 28 H 1.09002 * 109.47250 * 119.99780 * 2 1 3 29 29 H 1.08997 * 109.47375 * 179.97438 * 8 6 4 30 30 H 1.09002 * 109.46886 * 300.00222 * 8 6 4 31 31 H 1.09000 * 109.47016 * 59.99874 * 8 6 4 32 32 H 1.08992 * 109.46320 * 54.14635 * 10 9 6 33 33 H 1.08998 * 109.44958 * 294.16680 * 10 9 6 34 34 H 1.09003 * 109.50876 * 299.23937 * 11 10 9 35 35 H 1.09001 * 109.50528 * 179.12067 * 11 10 9 36 36 H 1.08997 * 109.52278 * 62.24514 * 12 11 10 37 37 H 1.08998 * 109.47017 * 304.99408 * 13 12 11 38 38 H 1.08998 * 109.47516 * 65.00065 * 13 12 11 39 39 H 0.97001 * 120.00093 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.49992 * 177.59243 * 22 12 11 41 41 H 1.08998 * 109.50163 * 297.70749 * 22 12 11 42 42 H 1.08996 * 109.46350 * 305.85787 * 23 9 6 43 43 H 1.09001 * 109.46490 * 65.82534 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.3937 3.5483 -0.7329 8 6 3.7598 3.5564 1.3900 9 7 5.3467 2.8774 -0.3472 10 6 6.1340 2.3145 0.7573 11 6 7.5859 2.1320 0.3093 12 6 8.1593 3.4879 -0.1117 13 6 9.5911 3.3026 -0.6181 14 6 10.1968 4.6500 -0.9163 15 1 9.6182 5.5486 -0.7607 16 6 11.4896 4.7355 -1.3879 17 7 12.1944 3.6414 -1.5770 18 14 12.2401 6.4056 -1.7583 19 1 12.2544 7.2272 -0.5213 20 1 13.6298 6.2257 -2.2496 21 1 11.4326 7.0915 -2.7987 22 6 7.2931 4.0746 -1.2298 23 6 5.8496 4.2007 -0.7372 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1768 4.5634 1.3898 30 1 2.7016 3.6009 1.6476 31 1 4.2868 2.9455 2.1229 32 1 5.7184 1.3486 1.0442 33 1 6.0996 2.9925 1.6100 34 1 7.6226 1.4435 -0.5349 35 1 8.1734 1.7288 1.1342 36 1 8.1588 4.1648 0.7426 37 1 10.1841 2.7987 0.1452 38 1 9.5802 2.7001 -1.5263 39 1 13.1037 3.7016 -1.9091 40 1 7.6712 5.0593 -1.5044 41 1 7.3251 3.4166 -2.0982 42 1 5.2274 4.6048 -1.5357 43 1 5.8165 4.8698 0.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399410548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:43 Heat of formation + Delta-G solvation = -101.039563 kcal Electronic energy + Delta-G solvation = -21310.036394 eV Core-core repulsion = 18161.639832 eV Total energy + Delta-G solvation = -3148.396562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75808 -38.84245 -36.60660 -35.00334 -32.64765 -31.92461 -30.47083 -30.15390 -27.24169 -25.48700 -23.94571 -22.82457 -22.58267 -21.07113 -20.11368 -18.70544 -17.66584 -16.75526 -16.42729 -16.14730 -15.55925 -14.74392 -14.47944 -14.25816 -14.11053 -13.72269 -13.47727 -13.11194 -12.86428 -12.64118 -12.40491 -12.33177 -12.02211 -11.95341 -11.78094 -11.63979 -11.45045 -11.05123 -10.83054 -10.69101 -10.58577 -10.50689 -10.41588 -10.15374 -9.81959 -9.48725 -9.01050 -8.80382 -8.28905 -8.13086 -5.93415 -3.95026 2.20947 2.45350 3.35847 3.40604 3.42428 4.04187 4.50242 4.52960 4.66074 4.74039 4.79738 4.89950 5.01118 5.28613 5.37375 5.41487 5.42932 5.44933 5.48885 5.57203 5.61388 5.66776 5.75179 5.85633 5.96920 6.02162 6.17965 6.28129 6.42585 6.48501 6.62075 6.72261 7.02563 7.11491 7.24281 7.27126 7.36226 7.75273 7.79188 7.92767 8.07928 8.50392 9.11536 9.68085 11.17919 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046909 B = 0.003458 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.755579 B = 8095.260885 C = 8335.827239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.467 3.533 5 O -0.486 6.486 6 C 0.091 3.909 7 H 0.113 0.887 8 C -0.181 4.181 9 N -0.520 5.520 10 C 0.051 3.949 11 C -0.110 4.110 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.099 4.099 23 C 0.057 3.943 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.740 -3.209 4.681 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.371 6.371 6 C -0.019 4.019 7 H 0.131 0.869 8 C -0.240 4.240 9 N -0.245 5.245 10 C -0.076 4.076 11 C -0.147 4.147 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.137 4.137 23 C -0.069 4.069 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -22.298 -3.916 4.212 23.028 hybrid contribution 0.455 1.222 0.416 1.369 sum -21.843 -2.694 4.628 22.490 Atomic orbital electron populations 1.21799 0.92744 1.02877 1.03440 1.22985 0.95181 0.80449 1.02622 1.86485 1.24870 1.32241 1.84454 1.23690 0.80240 0.92727 0.72529 1.90647 1.59958 1.42855 1.43671 1.21215 0.91915 0.89853 0.98902 0.86871 1.22383 1.03243 1.02131 0.96217 1.61808 0.98747 1.24869 1.39075 1.22339 0.95035 0.99330 0.90874 1.21665 0.92756 0.99240 1.01076 1.21250 0.97804 0.94111 0.96872 1.19107 0.88782 0.96810 0.96176 1.21225 0.97948 0.92914 1.43198 0.92772 1.25022 0.97364 0.96206 0.95920 1.69957 1.10137 1.27192 1.46285 0.86716 0.78268 0.84714 0.78619 1.20377 1.21397 1.20304 1.21554 0.90857 1.02215 0.99062 1.22270 0.98194 0.87512 0.98958 0.90331 0.91574 0.91476 0.91198 0.91384 0.90598 0.91123 0.91358 0.90051 0.95101 0.91556 0.92167 0.93050 0.96776 0.96502 0.93055 0.90645 0.91743 0.91369 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -4.13 10.22 -39.24 -0.40 -4.54 16 4 C 0.47 6.26 7.10 36.01 0.26 6.51 16 5 O -0.49 -8.00 14.06 -18.75 -0.26 -8.26 16 6 C 0.09 1.11 2.81 -68.86 -0.19 0.92 16 7 H 0.11 1.17 7.86 -51.93 -0.41 0.76 16 8 C -0.18 -1.83 8.30 37.16 0.31 -1.52 16 9 N -0.52 -7.87 4.35 -228.09 -0.99 -8.86 16 10 C 0.05 0.82 4.17 -3.83 -0.02 0.80 16 11 C -0.11 -2.04 5.38 -26.65 -0.14 -2.19 16 12 C -0.08 -1.70 2.20 -90.49 -0.20 -1.90 16 13 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.45 8.45 -34.44 -0.29 -14.74 16 15 H 0.05 1.46 7.08 -52.48 -0.37 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 23 C 0.06 0.86 5.22 -3.84 -0.02 0.84 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.08 0.74 7.09 -51.93 -0.37 0.37 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.75 6.45 -51.93 -0.33 0.41 16 32 H 0.08 1.34 5.91 -51.93 -0.31 1.03 16 33 H 0.03 0.46 6.59 -51.93 -0.34 0.12 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.48 7.05 -51.93 -0.37 1.12 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 43 H 0.03 0.47 7.13 -51.93 -0.37 0.10 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -31.83 337.03 -8.40 -40.23 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.49 Total: -2.93 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.05 Total: -10.91 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.26 Total: -35.42 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.66 Total: -12.80 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.83 -8.40 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399410548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.813 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds