Wall clock time and date at job start Mon Mar 30 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47324 * 2 1 4 4 C 1.34224 * 117.00406 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99706 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00178 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47336 * 314.55274 * 6 4 3 8 8 C 1.53004 * 109.47006 * 74.55204 * 6 4 3 9 9 N 1.46898 * 109.47272 * 194.54944 * 6 4 3 10 10 C 1.46856 * 110.99950 * 287.79715 * 9 6 4 11 11 C 1.53032 * 109.52130 * 174.15953 * 10 9 6 12 12 C 1.53124 * 109.28131 * 59.17946 * 11 10 9 13 13 C 1.52995 * 109.52456 * 182.44175 * 12 11 10 14 14 C 1.50702 * 109.47116 * 185.00058 * 13 12 11 15 15 H 1.08007 * 119.99903 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00080 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47197 * 60.00485 * 18 16 14 20 20 H 1.48497 * 109.46897 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47331 * 300.00150 * 18 16 14 22 22 C 1.53124 * 109.15863 * 302.34589 * 12 11 10 23 23 C 1.46842 * 111.00111 * 163.58542 * 9 6 4 24 24 H 1.09000 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47377 * 300.00229 * 1 2 3 26 26 H 1.09002 * 109.47250 * 60.00220 * 1 2 3 27 27 H 1.09001 * 109.47377 * 239.99771 * 2 1 3 28 28 H 1.09002 * 109.47250 * 119.99780 * 2 1 3 29 29 H 1.08997 * 109.47375 * 179.97438 * 8 6 4 30 30 H 1.09002 * 109.46886 * 300.00222 * 8 6 4 31 31 H 1.09000 * 109.47016 * 59.99874 * 8 6 4 32 32 H 1.08992 * 109.46320 * 54.14635 * 10 9 6 33 33 H 1.08998 * 109.44958 * 294.16680 * 10 9 6 34 34 H 1.09003 * 109.50876 * 299.23937 * 11 10 9 35 35 H 1.09001 * 109.50528 * 179.12067 * 11 10 9 36 36 H 1.08997 * 109.52278 * 62.24514 * 12 11 10 37 37 H 1.08998 * 109.47017 * 304.99408 * 13 12 11 38 38 H 1.08998 * 109.47516 * 65.00065 * 13 12 11 39 39 H 0.97001 * 120.00093 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.49992 * 177.59243 * 22 12 11 41 41 H 1.08998 * 109.50163 * 297.70749 * 22 12 11 42 42 H 1.08996 * 109.46350 * 305.85787 * 23 9 6 43 43 H 1.09001 * 109.46490 * 65.82534 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.3937 3.5483 -0.7329 8 6 3.7598 3.5564 1.3900 9 7 5.3467 2.8774 -0.3472 10 6 6.1340 2.3145 0.7573 11 6 7.5859 2.1320 0.3093 12 6 8.1593 3.4879 -0.1117 13 6 9.5911 3.3026 -0.6181 14 6 10.1968 4.6500 -0.9163 15 1 9.6182 5.5486 -0.7607 16 6 11.4896 4.7355 -1.3879 17 7 12.1944 3.6414 -1.5770 18 14 12.2401 6.4056 -1.7583 19 1 12.2544 7.2272 -0.5213 20 1 13.6298 6.2257 -2.2496 21 1 11.4326 7.0915 -2.7987 22 6 7.2931 4.0746 -1.2298 23 6 5.8496 4.2007 -0.7372 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1768 4.5634 1.3898 30 1 2.7016 3.6009 1.6476 31 1 4.2868 2.9455 2.1229 32 1 5.7184 1.3486 1.0442 33 1 6.0996 2.9925 1.6100 34 1 7.6226 1.4435 -0.5349 35 1 8.1734 1.7288 1.1342 36 1 8.1588 4.1648 0.7426 37 1 10.1841 2.7987 0.1452 38 1 9.5802 2.7001 -1.5263 39 1 13.1037 3.7016 -1.9091 40 1 7.6712 5.0593 -1.5044 41 1 7.3251 3.4166 -2.0982 42 1 5.2274 4.6048 -1.5357 43 1 5.8165 4.8698 0.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399410548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:42 Heat of formation + Delta-G solvation = -120.347893 kcal Electronic energy + Delta-G solvation = -21310.873666 eV Core-core repulsion = 18161.639832 eV Total energy + Delta-G solvation = -3149.233834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78591 -40.07227 -37.68117 -36.49354 -34.56952 -32.73794 -31.78729 -31.53708 -28.91409 -26.60603 -25.46116 -24.03332 -23.74942 -22.45852 -21.37606 -20.20695 -18.67998 -18.37742 -17.66547 -17.39899 -16.73551 -16.41395 -15.79685 -15.34182 -15.20546 -15.13977 -14.75565 -14.36286 -14.07232 -13.82383 -13.60695 -13.40922 -13.34502 -13.08064 -12.98779 -12.78233 -12.65553 -12.56195 -12.48125 -12.36081 -12.14019 -11.89201 -11.70173 -11.49295 -11.33938 -11.20740 -10.89181 -10.60208 -10.50508 -9.26600 -8.15444 -6.25724 1.20174 1.40867 1.44247 1.51736 1.56757 2.43312 2.93347 3.17577 3.68111 3.85719 3.99707 4.01856 4.06118 4.11370 4.14651 4.17147 4.36313 4.39856 4.48496 4.65240 4.66738 4.73316 4.77301 4.83117 4.87970 4.94378 4.98781 5.07091 5.14540 5.16654 5.17816 5.38001 5.41579 5.47664 5.49570 5.58517 5.81233 5.89578 6.06585 6.12330 6.30642 6.80836 6.90725 7.42801 8.96654 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046909 B = 0.003458 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.755579 B = 8095.260885 C = 8335.827239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.526 6.526 6 C 0.092 3.908 7 H 0.139 0.861 8 C -0.175 4.175 9 N -0.540 5.540 10 C 0.065 3.935 11 C -0.106 4.106 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.095 4.095 23 C 0.068 3.932 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.055 0.945 37 H -0.018 1.018 38 H -0.017 1.017 39 H 0.261 0.739 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.206 -1.109 5.168 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.414 6.414 6 C -0.018 4.018 7 H 0.157 0.843 8 C -0.233 4.233 9 N -0.265 5.265 10 C -0.063 4.063 11 C -0.143 4.143 12 C -0.091 4.091 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.133 4.133 23 C -0.059 4.059 24 H 0.116 0.884 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.001 0.999 38 H 0.001 0.999 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.810 -1.804 4.706 25.317 hybrid contribution 1.193 0.468 0.251 1.306 sum -23.617 -1.336 4.957 24.169 Atomic orbital electron populations 1.21809 0.90139 1.04298 1.03851 1.23252 0.97181 0.79401 1.02219 1.86485 1.23689 1.33496 1.83843 1.24021 0.80619 0.92874 0.71402 1.90641 1.60912 1.44150 1.45659 1.21357 0.89813 0.89590 1.01020 0.84320 1.22349 1.04645 1.02058 0.94267 1.61652 1.00532 1.25147 1.39187 1.22117 0.92770 0.99747 0.91632 1.21570 0.95177 0.97453 1.00146 1.21086 0.94925 0.95545 0.97578 1.19003 0.92042 0.95502 0.93810 1.21635 0.98381 0.93801 1.42763 0.91617 1.26020 0.98041 1.00494 0.95688 1.70119 1.10547 1.29918 1.47379 0.85523 0.77178 0.79483 0.79002 1.19076 1.21304 1.18951 1.21438 0.93575 1.00787 0.97518 1.22142 0.95509 0.87791 1.00418 0.88431 0.90970 0.91185 0.91950 0.91599 0.89555 0.89045 0.92407 0.90550 0.93452 0.93796 0.92423 0.92612 0.99926 0.99874 0.93009 0.91539 0.93822 0.88660 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.91 6.19 71.98 0.45 1.35 16 3 O -0.36 -7.47 10.22 -51.36 -0.52 -7.99 16 4 C 0.47 11.82 7.10 71.24 0.51 12.32 16 5 O -0.53 -17.18 14.06 21.95 0.31 -16.87 16 6 C 0.09 1.97 2.81 44.17 0.12 2.09 16 7 H 0.14 2.30 7.86 -2.39 -0.02 2.28 16 8 C -0.17 -2.92 8.30 71.98 0.60 -2.32 16 9 N -0.54 -15.37 4.35 -875.53 -3.81 -19.18 16 10 C 0.06 2.01 4.17 86.32 0.36 2.37 16 11 C -0.11 -4.04 5.38 30.65 0.16 -3.88 16 12 C -0.07 -3.07 2.20 -10.71 -0.02 -3.10 16 13 C 0.03 1.83 4.45 29.85 0.13 1.96 16 14 C -0.53 -30.13 8.45 25.60 0.22 -29.92 16 15 H 0.07 3.52 7.08 -2.91 -0.02 3.50 16 16 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 17 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 18 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C -0.10 -3.55 5.15 30.65 0.16 -3.39 16 23 C 0.07 1.85 5.22 86.33 0.45 2.30 16 24 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.09 1.30 7.09 -2.39 -0.02 1.28 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.10 6.45 -2.39 -0.02 1.09 16 32 H 0.08 2.50 5.91 -2.39 -0.01 2.48 16 33 H 0.05 1.32 6.59 -2.39 -0.02 1.31 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 37 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.07 2.57 7.05 -2.39 -0.02 2.55 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 2.12 7.95 -2.39 -0.02 2.11 16 43 H 0.05 1.24 7.13 -2.39 -0.02 1.22 16 Total: -1.00 -71.06 337.03 3.59 -67.48 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.96 Total: 9.20 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.33 Total: -20.78 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.52 Total: -77.79 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.22 Total: -24.86 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.06 3.59 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399410548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.871 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds