Wall clock time and date at job start Mon Mar 30 2020 01:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 8 8 C 1.53002 * 109.46796 * 299.72392 * 6 4 3 9 9 N 1.46896 * 109.47652 * 179.72202 * 6 4 3 10 10 C 1.46841 * 111.00422 * 170.79073 * 9 6 4 11 11 C 1.53041 * 109.52565 * 185.83797 * 10 9 6 12 12 C 1.53114 * 109.27946 * 300.81961 * 11 10 9 13 13 C 1.52997 * 109.52313 * 177.55967 * 12 11 10 14 14 C 1.50696 * 109.47440 * 65.31998 * 13 12 11 15 15 H 1.08009 * 119.99641 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00283 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46841 * 89.99899 * 18 16 14 20 20 H 1.48498 * 109.47053 * 209.99403 * 18 16 14 21 21 H 1.48501 * 109.47112 * 329.99767 * 18 16 14 22 22 C 1.53126 * 109.15948 * 57.65200 * 12 11 10 23 23 C 1.46855 * 110.99927 * 294.99893 * 9 6 4 24 24 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 25 25 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 26 26 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 1.09008 * 109.46845 * 299.99275 * 8 6 4 30 30 H 1.08993 * 109.47452 * 60.00035 * 8 6 4 31 31 H 1.09003 * 109.46969 * 179.97438 * 8 6 4 32 32 H 1.08999 * 109.46129 * 305.85175 * 10 9 6 33 33 H 1.09006 * 109.46600 * 65.81981 * 10 9 6 34 34 H 1.08998 * 109.50428 * 180.87726 * 11 10 9 35 35 H 1.09000 * 109.49639 * 60.76086 * 11 10 9 36 36 H 1.09007 * 109.51999 * 297.75175 * 12 11 10 37 37 H 1.09000 * 109.46875 * 185.31691 * 13 12 11 38 38 H 1.08997 * 109.46903 * 305.30864 * 13 12 11 39 39 H 0.97003 * 119.99806 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.50106 * 182.40697 * 22 12 11 41 41 H 1.08990 * 109.49995 * 62.28872 * 22 12 11 42 42 H 1.09002 * 109.46296 * 294.17560 * 23 9 6 43 43 H 1.09004 * 109.46042 * 54.14077 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5816 3.4669 0.8960 8 6 3.4534 3.6881 -1.2429 9 7 5.3876 2.8606 0.0105 10 6 5.9847 4.1850 -0.2029 11 6 7.5029 4.0461 -0.3370 12 6 8.0669 3.4105 0.9367 13 6 9.5764 3.2131 0.7845 14 6 10.2514 4.5568 0.6857 15 1 9.6624 5.4613 0.7270 16 6 11.6205 4.6317 0.5417 17 7 12.3375 3.5303 0.4909 18 14 12.4571 6.2974 0.4186 19 1 12.8236 6.7689 1.7782 20 1 13.6832 6.1754 -0.4102 21 1 11.5295 7.2719 -0.2101 22 6 7.3935 2.0539 1.1622 23 6 5.8786 2.2507 1.2529 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 3.7925 3.1586 -2.1334 30 1 2.3649 3.7452 -1.2465 31 1 3.8696 4.6955 -1.2383 32 1 5.5784 4.6241 -1.1140 33 1 5.7525 4.8291 0.6454 34 1 7.9473 5.0310 -0.4798 35 1 7.7360 3.4134 -1.1934 36 1 7.8677 4.0620 1.7878 37 1 9.9618 2.6758 1.6510 38 1 9.7782 2.6377 -0.1190 39 1 13.3009 3.5830 0.3899 40 1 7.7598 1.6156 2.0905 41 1 7.6250 1.3900 0.3294 42 1 5.6469 2.9037 2.0943 43 1 5.3950 1.2848 1.3991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399410549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:45 Heat of formation + Delta-G solvation = -98.801869 kcal Electronic energy + Delta-G solvation = -21280.427903 eV Core-core repulsion = 18132.128374 eV Total energy + Delta-G solvation = -3148.299529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75327 -38.74518 -36.61798 -34.99454 -32.73090 -31.93324 -30.71011 -30.12314 -27.32082 -25.27735 -23.91475 -23.01396 -22.06974 -21.00713 -20.22386 -18.93574 -17.67890 -16.78529 -16.50344 -16.17124 -15.79268 -14.79566 -14.42665 -14.22606 -13.95593 -13.61843 -13.26828 -13.16132 -13.06358 -12.77074 -12.40339 -12.23574 -11.96327 -11.90744 -11.73778 -11.59624 -11.40329 -11.05393 -10.82056 -10.69914 -10.63960 -10.57246 -10.34152 -10.19401 -9.79724 -9.45856 -9.00064 -8.80392 -8.28984 -8.15156 -5.93545 -3.95052 2.18417 2.43593 3.34594 3.41021 3.43638 3.97326 4.50269 4.51978 4.64890 4.73003 4.82650 4.93700 4.99895 5.27403 5.36380 5.41386 5.47415 5.48512 5.52237 5.58845 5.64263 5.67608 5.74918 5.90946 5.94507 6.04519 6.17995 6.26722 6.40547 6.48295 6.61824 6.72204 7.02642 7.11105 7.24220 7.26611 7.36050 7.75482 7.77626 7.92806 8.07915 8.50477 9.11710 9.68137 11.17824 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047456 B = 0.003483 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.872503 B = 8037.975531 C = 8434.855287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.483 6.483 6 C 0.092 3.908 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.520 5.520 10 C 0.054 3.946 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.108 4.108 23 C 0.051 3.949 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 -2.914 -1.268 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.305 3.695 5 O -0.368 6.368 6 C -0.018 4.018 7 H 0.092 0.908 8 C -0.203 4.203 9 N -0.246 5.246 10 C -0.073 4.073 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.145 4.145 23 C -0.076 4.076 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.852 -3.606 -1.678 23.196 hybrid contribution 0.390 1.153 0.675 1.392 sum -22.462 -2.453 -1.004 22.618 Atomic orbital electron populations 1.21797 0.92712 1.02894 1.03448 1.22992 0.95207 0.80414 1.02640 1.86485 1.24795 1.32245 1.84449 1.23672 0.80300 0.92734 0.72784 1.90662 1.59958 1.42761 1.43434 1.21144 0.90509 0.89240 1.00890 0.90835 1.21900 1.01537 1.00708 0.96156 1.61723 1.01736 1.23551 1.37623 1.22366 0.97312 0.87565 1.00066 1.21553 0.90777 1.02077 0.99244 1.21260 0.98620 0.93984 0.96237 1.19111 0.87878 0.96820 0.97093 1.21258 0.91790 0.92795 1.49331 0.92717 1.25026 0.97700 0.96185 0.95642 1.69975 1.06031 1.26815 1.50755 0.86653 0.79119 0.84649 0.77909 1.20819 1.21325 1.19935 1.21638 0.92006 0.99227 1.01674 1.22322 0.97923 0.99013 0.88330 0.91548 0.91489 0.90313 0.91216 0.91336 0.91079 0.91052 0.90460 0.90663 0.95132 0.90641 0.91705 0.93069 0.96784 0.96467 0.93120 0.92161 0.91437 0.95695 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.15 0.38 -0.54 16 2 C 0.06 0.56 6.19 37.15 0.23 0.79 16 3 O -0.36 -4.11 10.13 -39.26 -0.40 -4.51 16 4 C 0.46 6.26 6.93 36.00 0.25 6.51 16 5 O -0.48 -8.00 14.01 -18.76 -0.26 -8.26 16 6 C 0.09 1.15 2.60 -68.87 -0.18 0.97 16 7 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 8 C -0.15 -1.45 8.59 37.16 0.32 -1.13 16 9 N -0.52 -7.99 4.27 -228.08 -0.97 -8.97 16 10 C 0.05 0.81 5.00 -3.83 -0.02 0.79 16 11 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 12 C -0.08 -1.72 2.20 -90.50 -0.20 -1.92 16 13 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 14 C -0.51 -14.44 8.45 -34.45 -0.29 -14.73 16 15 H 0.05 1.48 7.08 -52.48 -0.37 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.02 5.38 -26.65 -0.14 -2.17 16 23 C 0.05 0.84 5.10 -3.83 -0.02 0.82 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.08 0.70 6.19 -51.93 -0.32 0.38 16 32 H 0.08 0.98 5.83 -51.93 -0.30 0.68 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.49 7.05 -51.93 -0.37 1.12 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 1.34 5.71 -51.93 -0.30 1.04 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -31.94 338.74 -8.40 -40.34 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.56 Total: -3.37 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.03 Total: -10.51 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.24 Total: -35.55 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.66 Total: -12.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.94 -8.40 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399410549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.466 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds