Wall clock time and date at job start Mon Mar 30 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46770 * 2 1 4 4 O 1.42899 * 109.47566 * 120.00080 * 2 1 3 5 5 C 1.42892 * 114.00173 * 270.00122 * 4 2 1 6 6 C 1.54236 * 108.89604 * 272.88484 * 5 4 2 7 7 C 1.50476 * 108.52690 * 159.26536 * 6 5 4 8 8 C 1.54072 * 112.50298 * 94.14898 * 7 6 5 9 9 C 1.54065 * 112.81159 * 318.28586 * 8 7 6 10 10 C 1.50473 * 112.49867 * 318.28213 * 9 8 7 11 11 C 1.45545 * 108.89787 * 149.99549 * 5 4 2 12 12 C 1.50703 * 109.47052 * 240.00553 * 2 1 3 13 13 O 1.21293 * 119.99944 * 247.92482 * 12 2 1 14 14 N 1.34775 * 119.99999 * 67.92370 * 12 2 1 15 15 C 1.46495 * 120.00259 * 4.39491 * 14 12 2 16 16 C 1.37096 * 119.99732 * 184.40085 * 14 12 2 17 17 H 1.07997 * 120.00560 * 9.03970 * 16 14 12 18 18 C 1.38957 * 119.99915 * 189.04269 * 16 14 12 19 19 N 1.31415 * 119.99679 * 10.15288 * 18 16 14 20 20 Si 1.86800 * 120.00079 * 190.15375 * 18 16 14 21 21 H 1.48494 * 109.47039 * 90.00022 * 20 18 16 22 22 H 1.48507 * 109.46806 * 209.99815 * 20 18 16 23 23 H 1.48497 * 109.47232 * 329.99761 * 20 18 16 24 24 H 1.08989 * 109.47447 * 65.10634 * 1 2 3 25 25 H 1.08998 * 109.46959 * 185.11168 * 1 2 3 26 26 H 1.09001 * 109.46853 * 305.10293 * 1 2 3 27 27 H 1.09003 * 108.87434 * 31.39290 * 5 4 2 28 28 H 1.08999 * 109.62631 * 278.97133 * 6 5 4 29 29 H 1.08992 * 109.63232 * 39.55385 * 6 5 4 30 30 H 1.08993 * 108.87618 * 333.37003 * 7 6 5 31 31 H 1.08998 * 108.87689 * 214.92485 * 7 6 5 32 32 H 1.08998 * 108.81633 * 197.42559 * 8 7 6 33 33 H 1.09001 * 108.72670 * 79.07788 * 8 7 6 34 34 H 1.09005 * 108.87797 * 197.50509 * 9 8 7 35 35 H 1.09003 * 108.80165 * 79.00783 * 9 8 7 36 36 H 1.09001 * 109.62577 * 334.44326 * 10 9 8 37 37 H 1.09006 * 109.63063 * 213.86664 * 10 9 8 38 38 H 1.08995 * 108.89230 * 303.44771 * 11 5 4 39 39 H 1.09003 * 108.88964 * 62.03148 * 11 5 4 40 40 H 1.09004 * 109.47228 * 354.79167 * 15 14 12 41 41 H 1.09000 * 109.47507 * 234.79563 * 15 14 12 42 42 H 1.08998 * 109.47625 * 114.78999 * 15 14 12 43 43 H 0.97006 * 119.99918 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.2002 0.1828 2.2940 6 6 3.6196 0.7827 2.2274 7 6 3.6529 2.0271 3.0728 8 6 4.1457 1.7530 4.5066 9 6 3.5624 0.4568 5.1011 10 6 2.1023 0.2830 4.7818 11 6 1.9781 -0.5830 3.5116 12 6 2.0323 -0.7103 -1.2306 13 8 2.6067 -1.7734 -1.1252 14 7 1.8434 -0.1643 -2.4482 15 6 1.2363 1.1635 -2.5693 16 6 2.2191 -0.8515 -3.5734 17 1 2.5296 -1.8831 -3.4977 18 6 2.2006 -0.2206 -4.8113 19 7 2.0185 1.0788 -4.8839 20 14 2.4346 -1.2197 -6.3723 21 1 1.1131 -1.6828 -6.8663 22 1 3.0821 -0.3751 -7.4081 23 1 3.2948 -2.3952 -6.0834 24 1 -0.3634 0.4325 -0.9321 25 1 -0.3633 -1.0236 0.0916 26 1 -0.3633 0.5910 0.8408 27 1 1.4733 0.9939 2.2497 28 1 4.3406 0.0606 2.6104 29 1 3.8626 1.0347 1.1952 30 1 2.6488 2.4486 3.1196 31 1 4.3168 2.7538 2.6046 32 1 3.8605 2.5909 5.1426 33 1 5.2329 1.6758 4.4942 34 1 3.6865 0.4784 6.1838 35 1 4.1147 -0.3931 4.7002 36 1 1.6474 1.2579 4.6062 37 1 1.6021 -0.2131 5.6135 38 1 0.9796 -1.0185 3.4774 39 1 2.7121 -1.3873 3.5614 40 1 0.9220 1.5105 -1.5850 41 1 0.3701 1.1083 -3.2287 42 1 1.9651 1.8597 -2.9844 43 1 2.0059 1.5193 -5.7481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408281709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:58 Heat of formation + Delta-G solvation = -84.608499 kcal Electronic energy + Delta-G solvation = -21880.864228 eV Core-core repulsion = 18733.180170 eV Total energy + Delta-G solvation = -3147.684058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68159 -38.42238 -36.35153 -34.57255 -32.39066 -32.07561 -31.28246 -29.82976 -26.25264 -25.17638 -24.68679 -24.18455 -22.61804 -20.60956 -19.32680 -19.03048 -17.00551 -16.80715 -15.84389 -15.65080 -14.94122 -14.84433 -14.44560 -14.09920 -13.93544 -13.60162 -13.28895 -13.04644 -12.79214 -12.49108 -12.30990 -12.13039 -11.85860 -11.52473 -11.38904 -11.27546 -11.02681 -10.95532 -10.82302 -10.68995 -10.61825 -10.40056 -10.33823 -10.31528 -10.23309 -10.11356 -9.18353 -9.04237 -8.16514 -7.77792 -6.20341 -3.79012 3.18193 3.26588 3.32472 3.76534 3.91242 4.20994 4.59331 4.75409 4.81283 5.01087 5.07339 5.16720 5.19061 5.23745 5.31076 5.33836 5.44737 5.54199 5.68192 5.68373 5.71522 5.80934 5.85913 6.03183 6.06991 6.08680 6.12000 6.13464 6.18906 6.25056 6.27207 6.32017 6.43141 6.48991 6.58679 6.98161 7.40543 7.60329 7.62985 8.12751 8.54232 9.23488 9.47096 10.02609 10.73839 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.004200 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.234932 B = 6664.742448 C = 6778.624413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 H 0.070 0.930 4 O -0.353 6.353 5 C 0.094 3.906 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.110 4.110 11 C -0.120 4.120 12 C 0.444 3.556 13 O -0.575 6.575 14 N -0.448 5.448 15 C 0.103 3.897 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.026 3.974 19 N -0.889 5.889 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 5.219 15.683 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.087 0.913 4 O -0.271 6.271 5 C 0.036 3.964 6 C -0.179 4.179 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.158 4.158 12 C 0.231 3.769 13 O -0.458 6.458 14 N -0.168 5.168 15 C -0.040 4.040 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.176 4.176 19 N -0.531 5.531 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.164 4.635 15.565 16.282 hybrid contribution -0.022 0.110 -0.931 0.937 sum -1.186 4.744 14.634 15.430 Atomic orbital electron populations 1.22333 0.95105 1.03006 1.02404 1.21820 0.93934 0.95770 0.86449 0.91255 1.88107 1.86310 1.33880 1.18796 1.20993 0.95455 0.92854 0.87138 1.21877 0.98000 0.97446 1.00563 1.21291 1.01475 0.97804 0.94943 1.21916 1.00203 0.97364 0.95866 1.21383 0.96225 0.98345 0.99970 1.21233 0.96666 1.00076 0.96803 1.20517 1.03067 0.99134 0.93036 1.19677 0.85565 0.88030 0.83596 1.90523 1.45746 1.23872 1.85650 1.43607 1.52678 1.16215 1.04346 1.21932 0.99752 0.85514 0.96796 1.19786 1.42246 0.96937 0.83594 0.87906 1.25282 0.97098 0.95780 0.99390 1.70067 1.50045 1.07721 1.25243 0.85856 0.78503 0.79360 0.80590 1.20418 1.20959 1.19399 0.90487 0.91611 0.92733 0.93062 0.90983 0.91204 0.92216 0.92114 0.92499 0.92360 0.92495 0.91763 0.91625 0.91609 0.91484 0.91051 0.95434 0.92722 0.89627 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.05 37.16 0.34 -2.55 16 2 C 0.08 1.63 1.90 -27.88 -0.05 1.57 16 3 H 0.07 1.27 6.57 -51.93 -0.34 0.92 16 4 O -0.35 -6.94 9.09 -55.01 -0.50 -7.44 16 5 C 0.09 1.37 1.92 -29.60 -0.06 1.31 16 6 C -0.14 -1.97 5.16 -27.35 -0.14 -2.11 16 7 C -0.12 -1.28 5.31 -27.43 -0.15 -1.43 16 8 C -0.12 -1.08 5.85 -25.62 -0.15 -1.23 16 9 C -0.12 -1.14 5.32 -27.44 -0.15 -1.28 16 10 C -0.11 -1.06 5.61 -27.35 -0.15 -1.22 16 11 C -0.12 -1.50 4.82 -29.60 -0.14 -1.65 16 12 C 0.44 11.44 6.99 -10.98 -0.08 11.36 16 13 O -0.57 -17.14 16.13 -14.24 -0.23 -17.37 16 14 N -0.45 -11.78 3.02 -122.19 -0.37 -12.15 16 15 C 0.10 2.34 7.74 59.84 0.46 2.81 16 16 C -0.30 -8.49 9.51 -14.93 -0.14 -8.63 16 17 H 0.10 3.09 7.24 -52.49 -0.38 2.71 16 18 C 0.03 0.69 5.35 -17.46 -0.09 0.60 16 19 N -0.89 -23.57 9.79 55.50 0.54 -23.02 16 20 Si 0.93 21.09 29.56 -169.99 -5.03 16.06 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.08 1.30 5.91 -51.94 -0.31 0.99 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 27 H 0.05 0.69 6.91 -51.93 -0.36 0.33 16 28 H 0.07 1.02 6.97 -51.93 -0.36 0.66 16 29 H 0.07 1.11 7.67 -51.93 -0.40 0.72 16 30 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.66 6.62 -51.93 -0.34 0.31 16 36 H 0.07 0.61 6.98 -51.93 -0.36 0.25 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 40 H 0.03 0.51 4.48 -51.93 -0.23 0.28 16 41 H 0.05 1.27 7.63 -51.93 -0.40 0.88 16 42 H 0.09 2.08 6.58 -51.93 -0.34 1.74 16 43 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -31.70 324.38 -8.26 -39.96 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.06 Total: 1.52 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.50 Total: -2.45 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.17 Total: -35.17 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.73 Total: -24.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.70 -8.26 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408281709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.646 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds