Wall clock time and date at job start Mon Mar 30 2020 00:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46770 * 2 1 4 4 O 1.42899 * 109.47566 * 120.00080 * 2 1 3 5 5 C 1.42892 * 114.00173 * 270.00122 * 4 2 1 6 6 C 1.54236 * 108.89604 * 272.88484 * 5 4 2 7 7 C 1.50476 * 108.52690 * 159.26536 * 6 5 4 8 8 C 1.54072 * 112.50298 * 94.14898 * 7 6 5 9 9 C 1.54065 * 112.81159 * 318.28586 * 8 7 6 10 10 C 1.50473 * 112.49867 * 318.28213 * 9 8 7 11 11 C 1.45545 * 108.89787 * 149.99549 * 5 4 2 12 12 C 1.50703 * 109.47052 * 240.00553 * 2 1 3 13 13 O 1.21293 * 119.99944 * 247.92482 * 12 2 1 14 14 N 1.34775 * 119.99999 * 67.92370 * 12 2 1 15 15 C 1.46495 * 120.00259 * 4.39491 * 14 12 2 16 16 C 1.37096 * 119.99732 * 184.40085 * 14 12 2 17 17 H 1.07997 * 120.00560 * 9.03970 * 16 14 12 18 18 C 1.38957 * 119.99915 * 189.04269 * 16 14 12 19 19 N 1.31415 * 119.99679 * 10.15288 * 18 16 14 20 20 Si 1.86800 * 120.00079 * 190.15375 * 18 16 14 21 21 H 1.48494 * 109.47039 * 90.00022 * 20 18 16 22 22 H 1.48507 * 109.46806 * 209.99815 * 20 18 16 23 23 H 1.48497 * 109.47232 * 329.99761 * 20 18 16 24 24 H 1.08989 * 109.47447 * 65.10634 * 1 2 3 25 25 H 1.08998 * 109.46959 * 185.11168 * 1 2 3 26 26 H 1.09001 * 109.46853 * 305.10293 * 1 2 3 27 27 H 1.09003 * 108.87434 * 31.39290 * 5 4 2 28 28 H 1.08999 * 109.62631 * 278.97133 * 6 5 4 29 29 H 1.08992 * 109.63232 * 39.55385 * 6 5 4 30 30 H 1.08993 * 108.87618 * 333.37003 * 7 6 5 31 31 H 1.08998 * 108.87689 * 214.92485 * 7 6 5 32 32 H 1.08998 * 108.81633 * 197.42559 * 8 7 6 33 33 H 1.09001 * 108.72670 * 79.07788 * 8 7 6 34 34 H 1.09005 * 108.87797 * 197.50509 * 9 8 7 35 35 H 1.09003 * 108.80165 * 79.00783 * 9 8 7 36 36 H 1.09001 * 109.62577 * 334.44326 * 10 9 8 37 37 H 1.09006 * 109.63063 * 213.86664 * 10 9 8 38 38 H 1.08995 * 108.89230 * 303.44771 * 11 5 4 39 39 H 1.09003 * 108.88964 * 62.03148 * 11 5 4 40 40 H 1.09004 * 109.47228 * 354.79167 * 15 14 12 41 41 H 1.09000 * 109.47507 * 234.79563 * 15 14 12 42 42 H 1.08998 * 109.47625 * 114.78999 * 15 14 12 43 43 H 0.97006 * 119.99918 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.2002 0.1828 2.2940 6 6 3.6196 0.7827 2.2274 7 6 3.6529 2.0271 3.0728 8 6 4.1457 1.7530 4.5066 9 6 3.5624 0.4568 5.1011 10 6 2.1023 0.2830 4.7818 11 6 1.9781 -0.5830 3.5116 12 6 2.0323 -0.7103 -1.2306 13 8 2.6067 -1.7734 -1.1252 14 7 1.8434 -0.1643 -2.4482 15 6 1.2363 1.1635 -2.5693 16 6 2.2191 -0.8515 -3.5734 17 1 2.5296 -1.8831 -3.4977 18 6 2.2006 -0.2206 -4.8113 19 7 2.0185 1.0788 -4.8839 20 14 2.4346 -1.2197 -6.3723 21 1 1.1131 -1.6828 -6.8663 22 1 3.0821 -0.3751 -7.4081 23 1 3.2948 -2.3952 -6.0834 24 1 -0.3634 0.4325 -0.9321 25 1 -0.3633 -1.0236 0.0916 26 1 -0.3633 0.5910 0.8408 27 1 1.4733 0.9939 2.2497 28 1 4.3406 0.0606 2.6104 29 1 3.8626 1.0347 1.1952 30 1 2.6488 2.4486 3.1196 31 1 4.3168 2.7538 2.6046 32 1 3.8605 2.5909 5.1426 33 1 5.2329 1.6758 4.4942 34 1 3.6865 0.4784 6.1838 35 1 4.1147 -0.3931 4.7002 36 1 1.6474 1.2579 4.6062 37 1 1.6021 -0.2131 5.6135 38 1 0.9796 -1.0185 3.4774 39 1 2.7121 -1.3873 3.5614 40 1 0.9220 1.5105 -1.5850 41 1 0.3701 1.1083 -3.2287 42 1 1.9651 1.8597 -2.9844 43 1 2.0059 1.5193 -5.7481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408281709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:57 Heat of formation + Delta-G solvation = -102.924634 kcal Electronic energy + Delta-G solvation = -21881.658475 eV Core-core repulsion = 18733.180170 eV Total energy + Delta-G solvation = -3148.478305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08848 -40.01394 -37.68654 -36.64240 -34.01690 -33.16146 -32.70505 -31.20866 -28.20218 -26.83972 -25.87813 -25.20532 -24.17703 -21.68043 -20.86389 -20.12100 -18.98748 -18.38688 -17.48972 -17.02061 -16.50649 -16.16986 -15.85038 -15.65717 -15.41722 -14.92516 -14.75051 -14.22977 -13.94891 -13.91145 -13.56764 -13.39808 -13.34181 -13.07692 -13.04096 -12.82665 -12.61082 -12.42308 -12.21598 -12.15140 -12.08623 -11.96388 -11.40714 -11.37805 -11.23249 -11.15006 -11.08731 -10.55028 -10.13254 -9.85652 -8.25858 -5.94987 1.35408 1.39615 1.52044 1.96041 2.17553 2.50205 3.07964 3.25470 3.65381 3.85538 3.87314 4.00492 4.03339 4.17143 4.22138 4.25458 4.32809 4.39989 4.44901 4.53233 4.57671 4.65873 4.78998 4.91758 4.97270 4.99061 5.08441 5.13317 5.18571 5.23164 5.28894 5.32689 5.35667 5.38339 5.41716 5.47079 5.52110 5.59058 5.97976 6.30804 6.52241 7.15242 7.44073 7.99842 8.65131 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.004200 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.234932 B = 6664.742448 C = 6778.624413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 H 0.089 0.911 4 O -0.385 6.385 5 C 0.089 3.911 6 C -0.139 4.139 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.101 4.101 11 C -0.120 4.120 12 C 0.427 3.573 13 O -0.631 6.631 14 N -0.458 5.458 15 C 0.113 3.887 16 C -0.345 4.345 17 H 0.071 0.929 18 C -0.001 4.001 19 N -0.894 5.894 20 Si 0.992 3.008 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.279 1.279 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 7.193 16.843 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.106 0.894 4 O -0.304 6.304 5 C 0.032 3.968 6 C -0.177 4.177 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.161 4.161 10 C -0.139 4.139 11 C -0.157 4.157 12 C 0.216 3.784 13 O -0.518 6.518 14 N -0.177 5.177 15 C -0.029 4.029 16 C -0.472 4.472 17 H 0.089 0.911 18 C -0.202 4.202 19 N -0.534 5.534 20 Si 0.816 3.184 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.204 1.204 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.317 6.664 16.730 18.156 hybrid contribution 0.379 -0.497 -1.295 1.437 sum -1.939 6.167 15.435 16.734 Atomic orbital electron populations 1.22288 0.92411 1.03124 1.04211 1.21668 0.95678 0.95298 0.84157 0.89365 1.88088 1.86632 1.35924 1.19752 1.21329 0.96155 0.93188 0.86127 1.21841 0.97514 0.98788 0.99558 1.21264 1.02478 0.96000 0.95414 1.21911 1.00176 0.98086 0.94968 1.21397 0.95878 0.97711 1.01082 1.21215 0.97061 1.00121 0.95456 1.20556 1.02424 0.99105 0.93647 1.20841 0.84651 0.87731 0.85171 1.90467 1.48163 1.26478 1.86732 1.43862 1.52464 1.17152 1.04254 1.21871 0.98541 0.83478 0.99029 1.19706 1.45389 0.96535 0.85614 0.91062 1.26029 0.95780 0.96924 1.01498 1.70155 1.48468 1.08306 1.26450 0.84952 0.78772 0.77784 0.76925 1.19138 1.19265 1.20383 0.90442 0.92912 0.88501 0.90900 0.92137 0.93958 0.90909 0.91846 0.90501 0.92481 0.90612 0.93423 0.90389 0.89913 0.91496 0.92870 0.91185 0.93563 0.91273 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.05 71.98 0.65 -4.54 16 2 C 0.09 3.67 1.90 29.85 0.06 3.73 16 3 H 0.09 3.09 6.57 -2.38 -0.02 3.07 16 4 O -0.38 -15.24 9.09 -130.07 -1.18 -16.42 16 5 C 0.09 2.50 1.92 28.74 0.06 2.55 16 6 C -0.14 -3.84 5.16 30.20 0.16 -3.68 16 7 C -0.11 -2.25 5.31 30.14 0.16 -2.09 16 8 C -0.11 -1.83 5.85 31.32 0.18 -1.65 16 9 C -0.12 -2.01 5.32 30.14 0.16 -1.85 16 10 C -0.10 -1.65 5.61 30.20 0.17 -1.48 16 11 C -0.12 -2.86 4.82 28.74 0.14 -2.72 16 12 C 0.43 22.73 6.99 87.66 0.61 23.34 16 13 O -0.63 -39.82 16.13 15.85 0.26 -39.57 16 14 N -0.46 -24.72 3.02 -658.90 -1.99 -26.71 16 15 C 0.11 5.09 7.74 127.77 0.99 6.08 16 16 C -0.34 -20.40 9.51 84.04 0.80 -19.60 16 17 H 0.07 4.56 7.24 -2.91 -0.02 4.54 16 18 C 0.00 -0.06 5.35 84.93 0.45 0.39 16 19 N -0.89 -46.96 9.79 21.67 0.21 -46.75 16 20 Si 0.99 43.29 29.56 68.60 2.03 45.32 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.08 2.45 5.91 -2.39 -0.01 2.44 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.10 2.28 7.95 -2.39 -0.02 2.26 16 27 H 0.07 1.72 6.91 -2.39 -0.02 1.71 16 28 H 0.06 1.76 6.97 -2.39 -0.02 1.75 16 29 H 0.04 1.38 7.67 -2.39 -0.02 1.36 16 30 H 0.07 1.25 6.63 -2.39 -0.02 1.24 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.05 0.94 6.62 -2.39 -0.02 0.92 16 36 H 0.08 1.12 6.98 -2.39 -0.02 1.10 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.44 7.46 -2.39 -0.02 1.43 16 40 H 0.07 2.49 4.48 -2.39 -0.01 2.48 16 41 H 0.05 2.13 7.63 -2.39 -0.02 2.11 16 42 H 0.07 3.34 6.58 -2.39 -0.02 3.32 16 43 H 0.27 13.37 8.31 -92.70 -0.77 12.60 16 Total: -1.00 -72.20 324.38 4.89 -67.31 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.98 Total: 18.33 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.59 Total: -1.51 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.78 Total: -73.46 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.93 Total: -55.99 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -72.20 4.89 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408281709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.611 kcal (2) G-P(sol) polarization free energy of solvation -72.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds