Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 O 1.42897 * 109.47114 * 240.00024 * 2 1 3 5 5 C 1.42901 * 114.00206 * 150.84754 * 4 2 1 6 6 C 1.54240 * 108.89684 * 273.86152 * 5 4 2 7 7 C 1.50551 * 108.48863 * 159.17449 * 6 5 4 8 8 C 1.54067 * 112.41518 * 94.26610 * 7 6 5 9 9 C 1.54072 * 112.81574 * 318.28625 * 8 7 6 10 10 C 1.50475 * 112.49303 * 318.28159 * 9 8 7 11 11 C 1.45540 * 108.90026 * 151.06970 * 5 4 2 12 12 C 1.50694 * 109.47131 * 120.00120 * 2 1 3 13 13 O 1.21295 * 120.00088 * 115.00145 * 12 2 1 14 14 N 1.34776 * 119.99939 * 295.00110 * 12 2 1 15 15 C 1.46501 * 120.00244 * 359.97438 * 14 12 2 16 16 C 1.37103 * 120.00289 * 180.02562 * 14 12 2 17 17 H 1.08000 * 119.99816 * 22.82907 * 16 14 12 18 18 C 1.38949 * 119.99919 * 202.83728 * 16 14 12 19 19 N 1.31407 * 120.00295 * 12.25568 * 18 16 14 20 20 Si 1.86801 * 119.99813 * 192.25472 * 18 16 14 21 21 H 1.48498 * 109.47047 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47203 * 119.99994 * 20 18 16 23 23 H 1.48498 * 109.47027 * 239.99998 * 20 18 16 24 24 H 1.09004 * 109.47310 * 58.66580 * 1 2 3 25 25 H 1.08998 * 109.47636 * 178.66615 * 1 2 3 26 26 H 1.08999 * 109.47389 * 298.66819 * 1 2 3 27 27 H 1.08999 * 108.87567 * 32.46480 * 5 4 2 28 28 H 1.09005 * 109.63031 * 278.97341 * 6 5 4 29 29 H 1.09002 * 109.62750 * 39.55020 * 6 5 4 30 30 H 1.09000 * 108.92080 * 333.51116 * 7 6 5 31 31 H 1.09000 * 108.91942 * 215.01888 * 7 6 5 32 32 H 1.08997 * 108.81722 * 197.42461 * 8 7 6 33 33 H 1.09003 * 108.72954 * 79.08041 * 8 7 6 34 34 H 1.08999 * 108.87673 * 197.51159 * 9 8 7 35 35 H 1.08995 * 108.87970 * 79.06035 * 9 8 7 36 36 H 1.09004 * 109.62888 * 334.44781 * 10 9 8 37 37 H 1.09000 * 109.63070 * 213.86501 * 10 9 8 38 38 H 1.09000 * 108.89476 * 303.44622 * 11 5 4 39 39 H 1.09003 * 108.89070 * 62.02920 * 11 5 4 40 40 H 1.09002 * 109.46729 * 93.53093 * 15 14 12 41 41 H 1.08995 * 109.47542 * 213.53187 * 15 14 12 42 42 H 1.08996 * 109.47139 * 333.53589 * 15 14 12 43 43 H 0.96998 * 120.00420 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2749 -0.2069 -1.6302 6 6 3.0527 1.0042 -2.5591 7 6 4.3331 1.7930 -2.6297 8 6 5.2039 1.3928 -3.8360 9 6 5.2452 -0.1304 -4.0639 10 6 5.3745 -0.9015 -2.7782 11 6 3.9627 -1.2997 -2.3017 12 6 2.0323 -0.7104 1.2304 13 8 2.6530 -1.7468 1.1214 14 7 1.7918 -0.1942 2.4519 15 6 1.0426 1.0578 2.5836 16 6 2.2492 -0.8402 3.5714 17 1 3.0831 -1.5227 3.4982 18 6 1.6399 -0.6170 4.8000 19 7 0.4890 0.0146 4.8577 20 14 2.4569 -1.2147 6.3700 21 1 3.7354 -1.8920 6.0357 22 1 2.7273 -0.0566 7.2592 23 1 1.5570 -2.1713 7.0630 24 1 -0.3634 0.5344 -0.8778 25 1 -0.3634 -1.0273 -0.0239 26 1 -0.3634 0.4930 0.9017 27 1 3.8687 0.1101 -0.7729 28 1 2.7796 0.6564 -3.5554 29 1 2.2581 1.6330 -2.1572 30 1 4.9012 1.6274 -1.7143 31 1 4.0913 2.8532 -2.7055 32 1 6.2198 1.7512 -3.6705 33 1 4.8042 1.8712 -4.7302 34 1 6.0944 -0.3682 -4.7046 35 1 4.3287 -0.4366 -4.5682 36 1 5.8532 -0.2775 -2.0235 37 1 5.9703 -1.7984 -2.9475 38 1 4.0467 -2.1402 -1.6128 39 1 3.3743 -1.6093 -3.1655 40 1 -0.0142 0.8350 2.7306 41 1 1.4184 1.6179 3.4399 42 1 1.1660 1.6521 1.6783 43 1 0.0635 0.1701 5.7153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408281710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -109.517053 kcal Electronic energy + Delta-G solvation = -22059.785981 eV Core-core repulsion = 18911.021807 eV Total energy + Delta-G solvation = -3148.764174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14649 -39.91326 -37.63195 -36.56615 -34.08953 -33.19422 -32.76392 -31.15310 -28.13478 -26.86165 -25.77395 -25.14415 -24.39199 -21.64592 -20.91576 -20.12383 -18.94254 -18.37209 -17.70297 -16.88635 -16.68836 -16.13945 -15.84345 -15.57949 -15.40212 -14.89514 -14.56155 -14.29234 -14.05966 -13.92007 -13.67096 -13.26299 -13.11570 -13.06898 -13.02007 -12.88169 -12.59078 -12.45787 -12.39039 -12.27095 -12.13155 -11.84961 -11.49323 -11.37473 -11.23929 -11.16088 -11.03693 -10.90822 -9.91808 -9.70081 -8.34498 -6.00875 1.33588 1.38891 1.52621 1.96484 2.24494 2.57477 3.06365 3.10868 3.64757 3.83943 3.95805 3.97248 4.02722 4.15233 4.19520 4.29737 4.31145 4.37503 4.44593 4.55083 4.61642 4.71743 4.85435 4.87734 4.97666 4.99200 5.01496 5.07610 5.18182 5.22405 5.25785 5.32447 5.35126 5.38852 5.40979 5.42427 5.46797 5.56960 6.03417 6.25075 6.50555 7.15847 7.43556 8.01001 8.66784 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.004702 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.175174 B = 5953.093260 C = 6284.718938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 H 0.092 0.908 4 O -0.376 6.376 5 C 0.095 3.905 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.113 4.113 9 C -0.118 4.118 10 C -0.106 4.106 11 C -0.117 4.117 12 C 0.410 3.590 13 O -0.628 6.628 14 N -0.459 5.459 15 C 0.119 3.881 16 C -0.347 4.347 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.893 5.893 20 Si 0.988 3.012 21 H -0.277 1.277 22 H -0.262 1.262 23 H -0.274 1.274 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 7.874 -14.797 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.110 0.890 4 O -0.295 6.295 5 C 0.038 3.962 6 C -0.166 4.166 7 C -0.157 4.157 8 C -0.151 4.151 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.155 4.155 12 C 0.200 3.800 13 O -0.515 6.515 14 N -0.179 5.179 15 C -0.024 4.024 16 C -0.475 4.475 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.532 5.532 20 Si 0.812 3.188 21 H -0.202 1.202 22 H -0.187 1.187 23 H -0.200 1.200 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.181 7.318 -14.791 17.023 hybrid contribution 0.342 -0.550 1.482 1.617 sum 4.523 6.768 -13.309 15.601 Atomic orbital electron populations 1.21904 0.90394 1.02891 1.04630 1.21862 0.97013 0.94997 0.83069 0.89007 1.87945 1.36633 1.63160 1.41753 1.21166 0.84001 0.95446 0.95582 1.21832 0.98734 0.95643 1.00371 1.21316 0.95347 1.00143 0.98933 1.21912 0.99828 0.95404 0.97922 1.21362 1.02657 0.94993 0.96495 1.21215 0.94197 1.00564 0.98355 1.20505 0.97242 0.97349 1.00373 1.21841 0.84969 0.86965 0.86270 1.90463 1.46697 1.27285 1.87057 1.43886 1.48352 1.21129 1.04517 1.21610 0.96501 0.84529 0.99767 1.19598 1.14811 1.26530 0.86542 0.91678 1.26045 0.95393 0.96864 1.01778 1.70040 1.14662 1.41285 1.27190 0.84964 0.78059 0.78430 0.77387 1.20216 1.18671 1.19989 0.88198 0.93622 0.89706 0.95430 0.89937 0.91153 0.93532 0.90464 0.91579 0.90765 0.90675 0.91803 0.92357 0.90794 0.94638 0.90772 0.92461 0.93041 0.91398 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.26 71.98 0.67 -4.05 16 2 C 0.09 3.61 1.95 29.84 0.06 3.67 16 3 H 0.09 3.11 6.38 -2.39 -0.02 3.09 16 4 O -0.38 -14.85 9.09 -129.99 -1.18 -16.04 16 5 C 0.10 3.13 1.91 28.74 0.06 3.19 16 6 C -0.13 -3.05 5.15 30.22 0.16 -2.89 16 7 C -0.12 -2.39 5.32 30.16 0.16 -2.23 16 8 C -0.11 -1.85 5.85 31.32 0.18 -1.66 16 9 C -0.12 -2.10 5.31 30.14 0.16 -1.94 16 10 C -0.11 -2.49 5.61 30.20 0.17 -2.32 16 11 C -0.12 -3.61 4.82 28.73 0.14 -3.48 16 12 C 0.41 21.48 6.93 87.66 0.61 22.09 16 13 O -0.63 -38.66 16.20 15.91 0.26 -38.41 16 14 N -0.46 -24.47 3.02 -658.90 -1.99 -26.46 16 15 C 0.12 5.21 7.16 127.77 0.91 6.13 16 16 C -0.35 -20.41 9.28 84.04 0.78 -19.63 16 17 H 0.07 4.15 7.42 -2.91 -0.02 4.13 16 18 C 0.00 0.07 5.10 84.93 0.43 0.50 16 19 N -0.89 -47.39 10.67 21.66 0.23 -47.16 16 20 Si 0.99 43.22 29.57 68.60 2.03 45.25 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 2.81 5.17 -2.39 -0.01 2.80 16 27 H 0.03 1.04 7.09 -2.39 -0.02 1.03 16 28 H 0.08 1.78 6.97 -2.38 -0.02 1.76 16 29 H 0.07 1.61 7.57 -2.39 -0.02 1.59 16 30 H 0.05 1.08 6.63 -2.39 -0.02 1.06 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.14 6.62 -2.39 -0.02 1.12 16 36 H 0.06 1.45 6.98 -2.39 -0.02 1.44 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 2.10 7.46 -2.39 -0.02 2.08 16 40 H 0.06 2.58 6.53 -2.39 -0.02 2.57 16 41 H 0.05 2.37 7.20 -2.39 -0.02 2.36 16 42 H 0.07 2.36 5.84 -2.39 -0.01 2.35 16 43 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -71.34 324.83 4.81 -66.53 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.98 Total: 18.90 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.48 Total: -2.63 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.76 Total: -73.62 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.92 Total: -54.44 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.34 4.81 -66.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408281710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.986 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds