Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46991 * 2 1 4 4 C 1.50701 * 109.47607 * 120.00256 * 2 1 3 5 5 H 1.07999 * 120.00147 * 119.99937 * 4 2 1 6 6 C 1.37876 * 119.99574 * 299.99899 * 4 2 1 7 7 N 1.31514 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99828 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46818 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46630 * 120.00020 * 8 6 4 11 11 H 1.48499 * 109.47247 * 240.00263 * 8 6 4 12 12 N 1.46505 * 109.47048 * 240.00531 * 2 1 3 13 13 C 1.46509 * 119.99447 * 299.99681 * 12 2 1 14 14 C 1.34767 * 120.00407 * 119.99839 * 12 2 1 15 15 O 1.21288 * 120.00142 * 356.01895 * 14 12 2 16 16 C 1.50698 * 120.00187 * 176.29901 * 14 12 2 17 17 H 1.08996 * 109.47279 * 337.52422 * 16 14 12 18 18 O 1.42898 * 109.47269 * 217.52237 * 16 14 12 19 19 C 1.52999 * 109.47388 * 97.52525 * 16 14 12 20 20 C 1.53002 * 109.47033 * 294.38580 * 19 16 14 21 21 C 1.52996 * 109.47321 * 179.97438 * 20 19 16 22 22 C 1.53003 * 109.46998 * 60.00054 * 21 20 19 23 23 C 1.52997 * 109.47115 * 299.99785 * 22 21 20 24 24 C 1.53003 * 109.47324 * 174.38611 * 19 16 14 25 25 H 1.09001 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47257 * 299.99459 * 1 2 3 27 27 H 1.08996 * 109.47386 * 59.99780 * 1 2 3 28 28 H 0.97003 * 120.00040 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46802 * 275.20781 * 13 12 2 30 30 H 1.08991 * 109.47089 * 35.21023 * 13 12 2 31 31 H 1.09000 * 109.46548 * 155.21297 * 13 12 2 32 32 H 0.96696 * 114.00433 * 300.00316 * 18 16 14 33 33 H 1.08997 * 109.47333 * 54.38206 * 19 16 14 34 34 H 1.09006 * 109.46919 * 299.99824 * 20 19 16 35 35 H 1.08995 * 109.47202 * 59.99653 * 20 19 16 36 36 H 1.08997 * 109.47543 * 300.00352 * 21 20 19 37 37 H 1.08997 * 109.47766 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.47171 * 180.02562 * 22 21 20 39 39 H 1.08993 * 109.47335 * 60.00192 * 22 21 20 40 40 H 1.09002 * 109.47515 * 300.00553 * 23 22 21 41 41 H 1.08995 * 109.47278 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.46529 * 299.99579 * 24 19 16 43 43 H 1.08993 * 109.46819 * 60.00145 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.1467 -2.2870 3.6036 10 1 3.1468 -0.1873 4.8163 11 1 1.1664 -1.5868 4.8160 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0267 1.1446 -1.9294 16 6 3.3640 -0.7680 -3.2702 17 1 3.3978 -1.8362 -3.0562 18 8 4.6859 -0.2927 -3.5325 19 6 2.4810 -0.5210 -4.4951 20 6 1.1064 -1.1537 -4.2687 21 6 0.2232 -0.9062 -5.4932 22 6 0.8757 -1.5320 -6.7276 23 6 2.2501 -0.8993 -6.9540 24 6 3.1337 -1.1472 -5.7291 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7089 1.1612 3.4844 29 1 2.3633 -2.7372 -0.8945 30 1 0.6526 -2.2770 -1.0669 31 1 1.7140 -2.3087 -2.4954 32 1 4.7318 0.6524 -3.7314 33 1 2.3660 0.5518 -4.6498 34 1 1.2213 -2.2266 -4.1140 35 1 0.6414 -0.7076 -3.3896 36 1 0.1083 0.1666 -5.6476 37 1 -0.7559 -1.3573 -5.3323 38 1 0.2466 -1.3553 -7.6001 39 1 0.9905 -2.6049 -6.5733 40 1 2.1353 0.1736 -7.1082 41 1 2.7148 -1.3448 -7.8335 42 1 4.1129 -0.6964 -5.8903 43 1 3.2485 -2.2200 -5.5743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408414836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = -108.295254 kcal Electronic energy + Delta-G solvation = -22269.485777 eV Core-core repulsion = 19120.774584 eV Total energy + Delta-G solvation = -3148.711193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13318 -38.04454 -36.21432 -35.12047 -33.00506 -31.52678 -30.76276 -29.40889 -26.56352 -25.83608 -25.19777 -22.75218 -22.07414 -20.77255 -19.95740 -18.62474 -16.96586 -16.51862 -16.36073 -15.64714 -15.05618 -14.46707 -14.38360 -14.26341 -14.11605 -13.67999 -13.33523 -12.83947 -12.62128 -12.49349 -12.22875 -12.14559 -11.75555 -11.69956 -11.55678 -11.18021 -11.07811 -10.98272 -10.85367 -10.79854 -10.70943 -10.38897 -10.24984 -10.17566 -10.10708 -9.94691 -9.17036 -8.73198 -8.42567 -7.60364 -6.07760 -4.15696 3.22639 3.25948 3.34144 3.37728 3.86650 4.39330 4.47397 4.62221 4.66337 4.81050 5.00294 5.10441 5.23382 5.24742 5.28990 5.39801 5.45249 5.46345 5.58310 5.63219 5.73197 5.84381 5.98087 6.02781 6.06679 6.07499 6.10282 6.22631 6.29832 6.33469 6.41570 6.74307 6.79694 7.03886 7.39564 7.49579 7.70375 7.73038 8.00546 8.18352 8.49923 8.81115 8.99564 9.50946 10.97515 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.004984 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.190331 B = 5616.374765 C = 5946.393887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.585 5.585 13 C 0.071 3.929 14 C 0.481 3.519 15 O -0.554 6.554 16 C 0.093 3.907 17 H 0.113 0.887 18 O -0.544 6.544 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.107 4.107 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.381 0.619 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -6.167 -16.635 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.317 5.317 13 C -0.073 4.073 14 C 0.267 3.733 15 O -0.434 6.434 16 C 0.030 3.970 17 H 0.130 0.870 18 O -0.349 6.349 19 C -0.129 4.129 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.144 4.144 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.434 -6.058 -16.276 17.373 hybrid contribution 0.062 0.016 0.962 0.965 sum -0.372 -6.043 -15.314 16.467 Atomic orbital electron populations 1.22079 0.98195 0.99326 1.00833 1.18956 0.90926 0.94493 0.80034 0.91999 1.21356 1.31710 1.12982 0.90273 0.92224 1.24896 0.94943 0.94980 0.98990 1.69889 1.36446 1.22673 1.23639 0.86434 0.78591 0.79617 0.82727 1.19799 1.20910 1.20932 1.48248 1.48481 1.11591 1.23368 1.21905 1.01840 0.83406 1.00107 1.21195 0.79528 0.87921 0.84636 1.90639 1.60423 1.15845 1.76458 1.22052 0.83604 0.99248 0.92101 0.86955 1.86531 1.25949 1.30187 1.92251 1.21748 0.95134 1.01546 0.94443 1.21801 0.94654 1.00822 0.98740 1.21508 0.98417 1.01019 0.94523 1.21553 0.96310 1.00080 0.97771 1.21550 0.95588 1.00879 0.97666 1.21485 0.98700 1.00881 0.93345 0.95093 0.88814 0.97017 0.92754 0.93088 0.90899 0.91784 0.77036 0.90329 0.91246 0.90810 0.92021 0.91888 0.92347 0.92028 0.92104 0.92152 0.91214 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.94 37.16 0.33 -3.13 16 2 C 0.26 6.56 2.63 -69.08 -0.18 6.38 16 3 H 0.06 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.52 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.61 7.50 -52.49 -0.39 1.22 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.37 2.49 -175.26 -0.44 -12.80 16 13 C 0.07 1.18 8.38 59.85 0.50 1.68 16 14 C 0.48 9.92 6.00 -10.99 -0.07 9.85 16 15 O -0.55 -13.59 15.89 -10.73 -0.17 -13.76 16 16 C 0.09 1.44 2.58 -27.88 -0.07 1.36 16 17 H 0.11 1.62 6.28 -51.93 -0.33 1.29 16 18 O -0.54 -8.57 12.36 -51.52 -0.64 -9.21 16 19 C -0.11 -1.39 1.92 -90.62 -0.17 -1.56 16 20 C -0.12 -1.47 3.71 -26.73 -0.10 -1.57 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 22 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 23 C -0.12 -1.09 5.92 -26.71 -0.16 -1.24 16 24 C -0.11 -1.12 5.00 -26.70 -0.13 -1.25 16 25 H 0.03 0.67 6.69 -51.93 -0.35 0.32 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.85 7.98 -51.93 -0.41 0.43 16 30 H 0.07 1.20 6.45 -51.93 -0.33 0.86 16 31 H 0.06 0.84 3.06 -51.93 -0.16 0.68 16 32 H 0.38 5.32 8.66 45.56 0.39 5.71 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.74 6.60 -51.93 -0.34 0.40 16 35 H 0.07 1.07 6.47 -51.93 -0.34 0.73 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.74 7.54 -51.93 -0.39 0.35 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -31.12 325.34 -7.75 -38.87 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.26 Total: 5.40 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.75 Total: -4.98 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.19 Total: -37.41 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.81 Total: -22.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.12 -7.75 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408414836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.428 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds