Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.46880 * 60.00517 * 9 8 6 11 11 H 1.09004 * 109.47146 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.47270 * 60.00095 * 10 9 8 13 13 C 1.46897 * 111.00432 * 84.99695 * 12 10 9 14 14 C 1.50695 * 109.47207 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00248 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99368 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00506 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46981 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47540 * 119.99965 * 18 16 14 21 21 H 1.48501 * 109.47249 * 240.00119 * 18 16 14 22 22 C 1.52997 * 109.47342 * 299.99761 * 10 9 8 23 23 C 1.52997 * 109.47264 * 60.00079 * 22 10 9 24 24 H 1.09001 * 109.47355 * 60.00001 * 23 22 10 25 25 C 1.52995 * 109.47690 * 180.02562 * 23 22 10 26 26 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 29 29 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 31 31 H 1.09001 * 109.47204 * 300.00812 * 8 6 4 32 32 H 1.09008 * 109.46661 * 60.00193 * 8 6 4 33 33 H 1.09003 * 109.47116 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47186 * 300.00540 * 9 8 6 35 35 H 1.00900 * 110.99620 * 321.04022 * 12 10 9 36 36 H 1.08994 * 109.47005 * 300.00347 * 13 12 10 37 37 H 1.09006 * 109.46931 * 60.00202 * 13 12 10 38 38 H 0.97002 * 119.99584 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.47425 * 179.97438 * 22 10 9 40 40 H 1.08997 * 109.47193 * 300.00264 * 22 10 9 41 41 H 1.09003 * 109.47880 * 180.02562 * 25 23 22 42 42 H 1.09008 * 109.46766 * 300.00132 * 25 23 22 43 43 H 1.08997 * 109.47251 * 59.99889 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 4.0329 5.0991 -1.2477 10 6 5.5608 5.0196 -1.2482 11 1 5.9771 6.0270 -1.2480 12 7 6.0135 4.3035 -2.4483 13 6 6.1234 5.2148 -3.5952 14 6 6.5898 4.4463 -4.8046 15 1 6.7846 3.3867 -4.7290 16 6 6.7668 5.0956 -6.0080 17 7 6.5290 6.3858 -6.1001 18 14 7.3442 4.1429 -7.5074 19 1 7.5390 2.7166 -7.1427 20 1 6.3235 4.2438 -8.5813 21 1 8.6285 4.7108 -7.9903 22 6 6.0330 4.2719 0.0003 23 6 5.4488 2.8579 -0.0005 24 1 5.7846 2.3265 -0.8909 25 6 5.9204 2.1104 1.2483 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7841 3.1534 -2.1391 32 1 2.3601 3.7421 -1.2480 33 1 3.6962 5.6320 -2.1371 34 1 3.6970 5.6305 -0.3573 35 1 5.4023 3.5289 -2.6592 36 1 5.1498 5.6599 -3.8002 37 1 6.8418 6.0020 -3.3661 38 1 6.6532 6.8426 -6.9468 39 1 7.1215 4.2149 -0.0003 40 1 5.6971 4.8033 0.8908 41 1 5.5045 1.1028 1.2476 42 1 7.0090 2.0538 1.2484 43 1 5.5842 2.6419 2.1386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425981773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -112.329348 kcal Electronic energy + Delta-G solvation = -21582.085923 eV Core-core repulsion = 18433.199799 eV Total energy + Delta-G solvation = -3148.886124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85729 -38.78248 -36.66220 -34.38819 -32.51677 -32.21562 -31.40735 -29.62468 -26.64464 -25.84185 -24.01280 -22.75447 -21.81495 -21.46332 -20.43533 -18.66591 -17.60120 -16.59641 -16.46361 -16.41355 -15.17130 -14.61691 -14.49898 -14.18751 -13.96550 -13.86753 -13.36024 -12.99422 -12.95759 -12.40872 -12.39829 -12.11247 -11.96932 -11.76592 -11.67950 -11.57299 -11.54841 -11.17863 -10.85326 -10.69065 -10.64811 -10.56338 -10.51932 -10.23112 -9.97061 -9.87028 -9.56225 -9.10363 -8.46471 -7.21207 -6.01374 -4.02658 2.24162 2.64345 3.32235 3.39636 3.45256 4.45248 4.55357 4.72176 4.74500 4.80318 4.83892 5.06870 5.17044 5.25195 5.34390 5.35939 5.40085 5.52021 5.55558 5.59667 5.65677 5.69758 5.74216 5.76245 5.98197 6.05057 6.10288 6.14744 6.26306 6.35407 6.41568 6.53776 6.60291 6.70570 6.74199 7.30855 7.47961 7.80449 7.82608 8.16786 8.44792 8.66870 9.07507 9.62391 11.09684 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.004565 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.473225 B = 6132.817722 C = 6739.465655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.501 6.501 6 C -0.071 4.071 7 H 0.103 0.897 8 C -0.110 4.110 9 C -0.146 4.146 10 C 0.081 3.919 11 H 0.074 0.926 12 N -0.683 5.683 13 C 0.193 3.807 14 C -0.512 4.512 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.097 4.097 23 C -0.073 4.073 24 H 0.090 0.910 25 C -0.158 4.158 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.328 0.672 36 H -0.013 1.013 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -7.883 15.247 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.389 6.389 6 C -0.090 4.090 7 H 0.121 0.879 8 C -0.148 4.148 9 C -0.185 4.185 10 C -0.030 4.030 11 H 0.092 0.908 12 N -0.314 5.314 13 C 0.067 3.933 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.135 4.135 23 C -0.092 4.092 24 H 0.108 0.892 25 C -0.215 4.215 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.004 0.996 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.563 -8.012 15.267 19.716 hybrid contribution -0.671 -0.377 -1.138 1.374 sum -10.234 -8.389 14.129 19.358 Atomic orbital electron populations 1.21800 0.92780 1.02814 1.03525 1.22993 0.95277 0.80641 1.02497 1.86528 1.25032 1.32001 1.84093 1.23982 0.80186 0.93031 0.71854 1.90600 1.60006 1.43329 1.44923 1.21236 0.97126 0.88908 1.01755 0.87899 1.21513 1.00712 0.96549 0.96044 1.22195 0.98423 0.95590 1.02327 1.21560 0.91455 0.97809 0.92195 0.90788 1.60814 1.53769 1.12071 1.04781 1.19577 0.95224 0.91789 0.86756 1.21247 1.44474 0.95713 0.93667 0.92036 1.24976 0.95684 0.94911 0.98975 1.69974 1.49621 1.08436 1.25761 0.86464 0.78291 0.80200 0.82600 1.19670 1.21149 1.21007 1.21594 1.01159 0.93947 0.96798 1.20987 0.90344 0.97524 1.00322 0.89196 1.22073 1.01537 1.01497 0.96430 0.91378 0.90402 0.91592 0.91217 0.91462 0.90906 0.90959 0.91094 0.92008 0.85279 0.99553 0.95524 0.93040 0.90852 0.92606 0.90849 0.92533 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.48 10.12 -39.26 -0.40 -4.88 16 4 C 0.47 6.45 6.96 36.00 0.25 6.70 16 5 O -0.50 -8.01 13.41 -18.75 -0.25 -8.26 16 6 C -0.07 -0.91 2.16 -91.77 -0.20 -1.11 16 7 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.11 -1.51 4.88 -26.73 -0.13 -1.64 16 9 C -0.15 -2.14 5.52 -26.73 -0.15 -2.29 16 10 C 0.08 1.36 2.86 -67.72 -0.19 1.17 16 11 H 0.07 1.32 7.80 -51.93 -0.40 0.91 16 12 N -0.68 -14.31 5.75 -108.00 -0.62 -14.93 16 13 C 0.19 5.00 5.24 -4.98 -0.03 4.98 16 14 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.10 -1.37 4.92 -26.73 -0.13 -1.51 16 23 C -0.07 -1.03 1.65 -90.62 -0.15 -1.18 16 24 H 0.09 1.51 7.17 -51.93 -0.37 1.13 16 25 C -0.16 -2.03 8.87 37.16 0.33 -1.70 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.07 1.14 6.26 -51.93 -0.33 0.82 16 32 H 0.07 0.90 8.11 -51.92 -0.42 0.48 16 33 H 0.07 1.17 7.46 -51.93 -0.39 0.79 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.33 6.75 5.56 -39.29 -0.22 6.53 16 36 H -0.01 -0.36 7.44 -51.93 -0.39 -0.75 16 37 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.03 5.52 -51.93 -0.29 0.75 16 42 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -30.84 336.77 -8.10 -38.94 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.41 Total: 3.19 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.20 Total: -9.88 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.11 Total: -41.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.65 Total: -13.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.84 -8.10 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.393 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds