Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.46880 * 60.00517 * 9 8 6 11 11 H 1.09004 * 109.47146 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.47270 * 60.00095 * 10 9 8 13 13 C 1.46897 * 111.00432 * 84.99695 * 12 10 9 14 14 C 1.50695 * 109.47207 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00248 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99368 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00506 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46981 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47540 * 119.99965 * 18 16 14 21 21 H 1.48501 * 109.47249 * 240.00119 * 18 16 14 22 22 C 1.52997 * 109.47342 * 299.99761 * 10 9 8 23 23 C 1.52997 * 109.47264 * 60.00079 * 22 10 9 24 24 H 1.09001 * 109.47355 * 60.00001 * 23 22 10 25 25 C 1.52995 * 109.47690 * 180.02562 * 23 22 10 26 26 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 29 29 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 31 31 H 1.09001 * 109.47204 * 300.00812 * 8 6 4 32 32 H 1.09008 * 109.46661 * 60.00193 * 8 6 4 33 33 H 1.09003 * 109.47116 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47186 * 300.00540 * 9 8 6 35 35 H 1.00900 * 110.99620 * 321.04022 * 12 10 9 36 36 H 1.08994 * 109.47005 * 300.00347 * 13 12 10 37 37 H 1.09006 * 109.46931 * 60.00202 * 13 12 10 38 38 H 0.97002 * 119.99584 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.47425 * 179.97438 * 22 10 9 40 40 H 1.08997 * 109.47193 * 300.00264 * 22 10 9 41 41 H 1.09003 * 109.47880 * 180.02562 * 25 23 22 42 42 H 1.09008 * 109.46766 * 300.00132 * 25 23 22 43 43 H 1.08997 * 109.47251 * 59.99889 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 4.0329 5.0991 -1.2477 10 6 5.5608 5.0196 -1.2482 11 1 5.9771 6.0270 -1.2480 12 7 6.0135 4.3035 -2.4483 13 6 6.1234 5.2148 -3.5952 14 6 6.5898 4.4463 -4.8046 15 1 6.7846 3.3867 -4.7290 16 6 6.7668 5.0956 -6.0080 17 7 6.5290 6.3858 -6.1001 18 14 7.3442 4.1429 -7.5074 19 1 7.5390 2.7166 -7.1427 20 1 6.3235 4.2438 -8.5813 21 1 8.6285 4.7108 -7.9903 22 6 6.0330 4.2719 0.0003 23 6 5.4488 2.8579 -0.0005 24 1 5.7846 2.3265 -0.8909 25 6 5.9204 2.1104 1.2483 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7841 3.1534 -2.1391 32 1 2.3601 3.7421 -1.2480 33 1 3.6962 5.6320 -2.1371 34 1 3.6970 5.6305 -0.3573 35 1 5.4023 3.5289 -2.6592 36 1 5.1498 5.6599 -3.8002 37 1 6.8418 6.0020 -3.3661 38 1 6.6532 6.8426 -6.9468 39 1 7.1215 4.2149 -0.0003 40 1 5.6971 4.8033 0.8908 41 1 5.5045 1.1028 1.2476 42 1 7.0090 2.0538 1.2484 43 1 5.5842 2.6419 2.1386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425981773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -130.686743 kcal Electronic energy + Delta-G solvation = -21582.881959 eV Core-core repulsion = 18433.199799 eV Total energy + Delta-G solvation = -3149.682161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94119 -39.99569 -37.74775 -36.06132 -34.41702 -33.19105 -32.42797 -31.14294 -27.99940 -27.56058 -25.02720 -23.85334 -23.70975 -22.52609 -21.58914 -19.94268 -18.71284 -18.50596 -17.57821 -17.43536 -16.90687 -16.34732 -15.64612 -15.45144 -15.22878 -15.04250 -14.53675 -14.42436 -14.05376 -13.75431 -13.50294 -13.43927 -13.27876 -13.21381 -12.93140 -12.76319 -12.68090 -12.52430 -12.42777 -12.29046 -11.99162 -11.86530 -11.72366 -11.56543 -11.45631 -11.17605 -11.11608 -10.74807 -10.65093 -8.97285 -8.22415 -6.32702 1.17153 1.38953 1.39772 1.53519 1.70401 2.39429 3.10662 3.50909 3.61292 3.70630 3.81715 4.01160 4.07848 4.10925 4.18240 4.20978 4.35701 4.45832 4.47326 4.52549 4.65225 4.84014 4.86409 4.88037 4.92951 4.98017 5.02323 5.06738 5.12316 5.14611 5.23527 5.26920 5.33661 5.40975 5.49715 5.55544 5.61465 5.67295 6.06582 6.52436 6.76541 6.79386 6.93654 7.38257 8.88968 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.004565 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.473225 B = 6132.817722 C = 6739.465655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.467 3.533 5 O -0.528 6.528 6 C -0.065 4.065 7 H 0.136 0.864 8 C -0.104 4.104 9 C -0.138 4.138 10 C 0.074 3.926 11 H 0.061 0.939 12 N -0.684 5.684 13 C 0.211 3.789 14 C -0.535 4.535 15 H 0.057 0.943 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.277 1.277 22 C -0.087 4.087 23 C -0.070 4.070 24 H 0.055 0.945 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.330 0.670 36 H -0.035 1.035 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 -8.525 16.498 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.312 3.688 5 O -0.418 6.418 6 C -0.083 4.083 7 H 0.154 0.846 8 C -0.142 4.142 9 C -0.177 4.177 10 C -0.036 4.036 11 H 0.079 0.921 12 N -0.316 5.316 13 C 0.083 3.917 14 C -0.574 4.574 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.124 4.124 23 C -0.089 4.089 24 H 0.073 0.927 25 C -0.209 4.209 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.150 0.850 36 H -0.018 1.018 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.627 -8.657 16.539 21.481 hybrid contribution -0.378 -0.183 -1.487 1.545 sum -11.006 -8.841 15.052 20.636 Atomic orbital electron populations 1.21816 0.90437 1.04296 1.03704 1.23270 0.97110 0.79498 1.02352 1.86521 1.24117 1.33462 1.83620 1.24119 0.80532 0.93030 0.71155 1.90598 1.60697 1.44219 1.46248 1.21203 0.96064 0.88677 1.02399 0.84644 1.21433 1.01683 0.95593 0.95498 1.22084 0.96392 0.96354 1.02832 1.21719 0.93316 0.97138 0.91472 0.92108 1.60708 1.54849 1.11615 1.04460 1.19179 0.92962 0.91491 0.88064 1.21588 1.44961 0.95766 0.95050 0.92455 1.25882 0.95513 0.95871 1.02169 1.70087 1.50274 1.10007 1.26832 0.85354 0.78013 0.78811 0.78539 1.19113 1.20167 1.20252 1.21514 1.00529 0.93993 0.96399 1.20888 0.91408 0.97025 0.99597 0.92678 1.21991 1.01400 1.00868 0.96599 0.91656 0.88291 0.90888 0.92081 0.91001 0.93661 0.89146 0.93569 0.88457 0.85048 1.01777 0.98417 0.92643 0.91964 0.89034 0.92128 0.92680 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.29 71.98 0.74 -1.07 16 2 C 0.05 0.96 6.19 71.98 0.45 1.41 16 3 O -0.36 -8.39 10.12 -51.44 -0.52 -8.91 16 4 C 0.47 12.34 6.96 71.23 0.50 12.83 16 5 O -0.53 -16.70 13.41 21.97 0.29 -16.40 16 6 C -0.06 -1.52 2.16 -11.54 -0.02 -1.55 16 7 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 8 C -0.10 -2.74 4.88 30.59 0.15 -2.59 16 9 C -0.14 -3.88 5.52 30.59 0.17 -3.71 16 10 C 0.07 2.48 2.86 44.91 0.13 2.61 16 11 H 0.06 2.19 7.80 -2.39 -0.02 2.18 16 12 N -0.68 -29.69 5.75 -495.60 -2.85 -32.55 16 13 C 0.21 11.42 5.24 85.56 0.45 11.86 16 14 C -0.54 -31.32 9.32 25.60 0.24 -31.08 16 15 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 18 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.09 -2.31 4.92 30.59 0.15 -2.16 16 23 C -0.07 -1.89 1.65 -10.79 -0.02 -1.91 16 24 H 0.05 1.87 7.17 -2.39 -0.02 1.86 16 25 C -0.15 -3.61 8.87 71.98 0.64 -2.97 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 30 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.04 1.44 6.26 -2.39 -0.01 1.43 16 32 H 0.09 2.06 8.11 -2.38 -0.02 2.05 16 33 H 0.05 1.54 7.46 -2.39 -0.02 1.52 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.33 14.14 5.56 -89.69 -0.50 13.64 16 36 H -0.04 -2.03 7.44 -2.39 -0.02 -2.05 16 37 H 0.00 -0.13 8.06 -2.38 -0.02 -0.15 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.63 5.52 -2.39 -0.01 1.62 16 42 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.24 336.77 3.73 -64.51 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.48 Total: 20.17 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.02 Total: -17.65 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.57 Total: -89.04 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.23 Total: -25.31 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.24 3.73 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.180 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds