Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47410 * 2 1 4 4 C 1.34223 * 117.00475 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99393 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00706 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46952 * 59.99810 * 6 4 3 8 8 C 1.52997 * 109.46911 * 300.00399 * 6 4 3 9 9 C 1.53006 * 109.47269 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.46542 * 59.99862 * 9 8 6 11 11 H 1.09001 * 109.46812 * 60.00243 * 10 9 8 12 12 N 1.46896 * 109.46996 * 179.97438 * 10 9 8 13 13 C 1.46894 * 111.00513 * 275.00441 * 12 10 9 14 14 C 1.50703 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99800 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00163 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99752 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46946 * 89.99906 * 18 16 14 20 20 H 1.48504 * 109.47207 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.47548 * 330.00165 * 18 16 14 22 22 C 1.52997 * 109.47452 * 300.00026 * 10 9 8 23 23 C 1.52992 * 109.47490 * 179.97438 * 6 4 3 24 24 H 1.08998 * 109.46862 * 60.00752 * 23 6 4 25 25 C 1.52997 * 109.47482 * 300.00187 * 23 6 4 26 26 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 299.99687 * 1 2 3 28 28 H 1.08999 * 109.47067 * 59.99609 * 1 2 3 29 29 H 1.09005 * 109.46935 * 239.99871 * 2 1 3 30 30 H 1.08999 * 109.47067 * 120.00391 * 2 1 3 31 31 H 1.09001 * 109.47289 * 299.99759 * 8 6 4 32 32 H 1.09004 * 109.47261 * 59.99503 * 8 6 4 33 33 H 1.09000 * 109.47192 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46876 * 300.00443 * 9 8 6 35 35 H 1.00899 * 111.00075 * 151.04169 * 12 10 9 36 36 H 1.08997 * 109.47193 * 299.99847 * 13 12 10 37 37 H 1.09006 * 109.47284 * 59.99576 * 13 12 10 38 38 H 0.97001 * 119.99162 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46832 * 300.00199 * 22 10 9 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 10 9 41 41 H 1.09002 * 109.47153 * 59.99783 * 25 23 6 42 42 H 1.09001 * 109.46832 * 299.99974 * 25 23 6 43 43 H 1.09004 * 109.47261 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 4.0341 5.0987 -1.2471 10 6 5.5620 5.0190 -1.2464 11 1 5.8985 4.4873 -2.1364 12 7 6.1232 6.3765 -1.2461 13 6 6.2145 6.9087 -2.6122 14 6 6.7938 8.2994 -2.5720 15 1 7.0664 8.7436 -1.6261 16 6 6.9747 9.0050 -3.7426 17 7 6.6421 8.4643 -4.8944 18 14 7.6920 10.7290 -3.6926 19 1 9.1712 10.6530 -3.8013 20 1 7.1526 11.5228 -4.8258 21 1 7.3229 11.3819 -2.4108 22 6 6.0332 4.2716 0.0028 23 6 5.4486 2.8572 0.0023 24 1 5.7852 2.3253 -0.8875 25 6 5.9193 2.1101 1.2518 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7859 3.1528 -2.1381 32 1 2.3611 3.7417 -1.2483 33 1 3.6988 5.6310 -2.1373 34 1 3.6976 5.6303 -0.3570 35 1 7.0228 6.3958 -0.7896 36 1 6.8584 6.2646 -3.2109 37 1 5.2196 6.9418 -3.0565 38 1 6.7698 8.9606 -5.7180 39 1 5.6966 4.8033 0.8928 40 1 7.1216 4.2144 0.0031 41 1 5.5026 1.1028 1.2513 42 1 5.5827 2.6421 2.1416 43 1 7.0078 2.0526 1.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425981774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -116.646490 kcal Electronic energy + Delta-G solvation = -21085.867551 eV Core-core repulsion = 17936.794221 eV Total energy + Delta-G solvation = -3149.073330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91853 -38.62647 -36.72973 -34.73176 -32.53690 -32.34218 -31.64530 -29.51452 -26.80924 -25.87016 -23.83529 -22.63262 -21.99268 -21.33225 -19.93782 -19.62770 -17.71516 -16.69372 -16.53426 -16.42362 -14.77676 -14.69224 -14.58288 -14.51358 -14.08717 -13.79917 -13.63522 -13.15322 -12.74104 -12.60945 -12.37685 -12.22284 -11.99642 -11.86303 -11.74223 -11.54124 -11.38233 -11.15295 -11.03493 -10.80137 -10.73489 -10.63413 -10.63107 -10.21043 -10.08845 -9.96826 -9.57424 -9.11451 -8.47010 -7.27258 -6.01947 -4.03672 2.13185 2.54706 3.32515 3.38592 3.43189 4.41600 4.47379 4.61418 4.64965 4.71355 4.75447 4.98280 4.98943 5.24226 5.29406 5.34039 5.39831 5.45779 5.48921 5.53119 5.58025 5.65635 5.68991 5.75474 5.90221 5.95331 6.05348 6.17638 6.19797 6.21510 6.40386 6.45475 6.51904 6.64197 6.76376 7.30114 7.44801 7.69339 7.81106 8.15714 8.43222 8.64478 9.06090 9.61245 11.09164 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034601 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.020414 B = 8224.841431 C = 8744.614583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.506 6.506 6 C -0.073 4.073 7 H 0.109 0.891 8 C -0.109 4.109 9 C -0.103 4.103 10 C 0.083 3.917 11 H 0.035 0.965 12 N -0.687 5.687 13 C 0.195 3.805 14 C -0.514 4.514 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.112 4.112 23 C -0.071 4.071 24 H 0.077 0.923 25 C -0.159 4.159 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.329 0.671 36 H -0.015 1.015 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -15.977 10.968 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.394 6.394 6 C -0.092 4.092 7 H 0.127 0.873 8 C -0.147 4.147 9 C -0.141 4.141 10 C -0.027 4.027 11 H 0.053 0.947 12 N -0.317 5.317 13 C 0.068 3.932 14 C -0.552 4.552 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.150 4.150 23 C -0.090 4.090 24 H 0.095 0.905 25 C -0.216 4.216 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.003 0.997 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.933 -15.939 10.890 21.710 hybrid contribution 1.146 0.225 -0.536 1.285 sum -8.787 -15.714 10.355 20.769 Atomic orbital electron populations 1.21803 0.92682 1.02849 1.03638 1.22998 0.95371 0.80571 1.02438 1.86537 1.24908 1.32031 1.83952 1.24000 0.80239 0.92981 0.71669 1.90590 1.60084 1.43413 1.45313 1.21243 0.96497 0.88957 1.02477 0.87350 1.21569 1.00986 0.96855 0.95336 1.21501 0.95321 0.94038 1.03236 1.21481 0.94870 0.90578 0.95776 0.94705 1.60672 1.30033 1.18418 1.22595 1.19585 0.96472 0.94208 0.82944 1.21206 1.41132 0.99904 0.92991 0.91996 1.24994 0.95811 0.98414 0.95403 1.69967 1.48347 1.37783 0.97681 0.86496 0.79076 0.84164 0.77651 1.20762 1.21265 1.19772 1.21793 1.00192 0.93749 0.99277 1.20986 0.91223 0.96906 0.99901 0.90506 1.22078 1.01431 1.01580 0.96550 0.90377 0.91472 0.91361 0.91323 0.91416 0.91673 0.90714 0.91035 0.91253 0.85401 0.99736 0.95361 0.92946 0.91064 0.91671 0.90662 0.93186 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.11 10.12 -39.24 -0.40 -4.51 16 4 C 0.47 5.93 6.96 36.00 0.25 6.18 16 5 O -0.51 -7.36 13.41 -18.75 -0.25 -7.61 16 6 C -0.07 -0.87 2.16 -91.78 -0.20 -1.07 16 7 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.11 -1.40 5.14 -26.73 -0.14 -1.54 16 9 C -0.10 -1.60 5.43 -26.73 -0.15 -1.75 16 10 C 0.08 1.43 2.49 -67.71 -0.17 1.26 16 11 H 0.03 0.66 7.80 -51.93 -0.40 0.25 16 12 N -0.69 -14.44 6.30 -107.99 -0.68 -15.12 16 13 C 0.19 5.08 5.24 -4.98 -0.03 5.05 16 14 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 18 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.11 -1.56 4.48 -26.71 -0.12 -1.68 16 23 C -0.07 -0.90 1.89 -90.60 -0.17 -1.08 16 24 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 25 C -0.16 -1.87 8.87 37.16 0.33 -1.54 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.07 1.26 7.45 -51.93 -0.39 0.87 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.33 6.64 8.34 -39.29 -0.33 6.31 16 36 H -0.02 -0.42 8.05 -51.93 -0.42 -0.84 16 37 H 0.03 0.79 7.43 -51.93 -0.39 0.41 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 41 H 0.07 0.96 5.52 -51.93 -0.29 0.68 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -30.92 342.49 -8.31 -39.24 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.67 Total: 1.72 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.19 Total: -9.39 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.06 Total: -41.33 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.65 Total: -12.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.92 -8.31 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.410 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds