Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47410 * 2 1 4 4 C 1.34223 * 117.00475 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99393 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00706 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46952 * 59.99810 * 6 4 3 8 8 C 1.52997 * 109.46911 * 300.00399 * 6 4 3 9 9 C 1.53006 * 109.47269 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.46542 * 59.99862 * 9 8 6 11 11 H 1.09001 * 109.46812 * 60.00243 * 10 9 8 12 12 N 1.46896 * 109.46996 * 179.97438 * 10 9 8 13 13 C 1.46894 * 111.00513 * 275.00441 * 12 10 9 14 14 C 1.50703 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99800 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00163 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99752 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46946 * 89.99906 * 18 16 14 20 20 H 1.48504 * 109.47207 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.47548 * 330.00165 * 18 16 14 22 22 C 1.52997 * 109.47452 * 300.00026 * 10 9 8 23 23 C 1.52992 * 109.47490 * 179.97438 * 6 4 3 24 24 H 1.08998 * 109.46862 * 60.00752 * 23 6 4 25 25 C 1.52997 * 109.47482 * 300.00187 * 23 6 4 26 26 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47207 * 299.99687 * 1 2 3 28 28 H 1.08999 * 109.47067 * 59.99609 * 1 2 3 29 29 H 1.09005 * 109.46935 * 239.99871 * 2 1 3 30 30 H 1.08999 * 109.47067 * 120.00391 * 2 1 3 31 31 H 1.09001 * 109.47289 * 299.99759 * 8 6 4 32 32 H 1.09004 * 109.47261 * 59.99503 * 8 6 4 33 33 H 1.09000 * 109.47192 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46876 * 300.00443 * 9 8 6 35 35 H 1.00899 * 111.00075 * 151.04169 * 12 10 9 36 36 H 1.08997 * 109.47193 * 299.99847 * 13 12 10 37 37 H 1.09006 * 109.47284 * 59.99576 * 13 12 10 38 38 H 0.97001 * 119.99162 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46832 * 300.00199 * 22 10 9 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 10 9 41 41 H 1.09002 * 109.47153 * 59.99783 * 25 23 6 42 42 H 1.09001 * 109.46832 * 299.99974 * 25 23 6 43 43 H 1.09004 * 109.47261 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4497 3.6846 -1.2480 9 6 4.0341 5.0987 -1.2471 10 6 5.5620 5.0190 -1.2464 11 1 5.8985 4.4873 -2.1364 12 7 6.1232 6.3765 -1.2461 13 6 6.2145 6.9087 -2.6122 14 6 6.7938 8.2994 -2.5720 15 1 7.0664 8.7436 -1.6261 16 6 6.9747 9.0050 -3.7426 17 7 6.6421 8.4643 -4.8944 18 14 7.6920 10.7290 -3.6926 19 1 9.1712 10.6530 -3.8013 20 1 7.1526 11.5228 -4.8258 21 1 7.3229 11.3819 -2.4108 22 6 6.0332 4.2716 0.0028 23 6 5.4486 2.8572 0.0023 24 1 5.7852 2.3253 -0.8875 25 6 5.9193 2.1101 1.2518 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7859 3.1528 -2.1381 32 1 2.3611 3.7417 -1.2483 33 1 3.6988 5.6310 -2.1373 34 1 3.6976 5.6303 -0.3570 35 1 7.0228 6.3958 -0.7896 36 1 6.8584 6.2646 -3.2109 37 1 5.2196 6.9418 -3.0565 38 1 6.7698 8.9606 -5.7180 39 1 5.6966 4.8033 0.8928 40 1 7.1216 4.2144 0.0031 41 1 5.5026 1.1028 1.2513 42 1 5.5827 2.6421 2.1416 43 1 7.0078 2.0526 1.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425981774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -135.204054 kcal Electronic energy + Delta-G solvation = -21086.672267 eV Core-core repulsion = 17936.794221 eV Total energy + Delta-G solvation = -3149.878046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91679 -39.79386 -37.76342 -36.36485 -34.50303 -33.31425 -32.53053 -31.03522 -28.16884 -27.49399 -24.81170 -23.85493 -23.58176 -22.42863 -21.27816 -20.75733 -18.71390 -18.52469 -17.60922 -17.47583 -16.71257 -16.23398 -15.80629 -15.58754 -15.30992 -14.96808 -14.77740 -14.37930 -13.99659 -13.88195 -13.59935 -13.37657 -13.25762 -12.98705 -12.95266 -12.73659 -12.68817 -12.52612 -12.34271 -12.31422 -12.16009 -11.94875 -11.82691 -11.53068 -11.44149 -11.27745 -11.06352 -10.85555 -10.64848 -9.09737 -8.21621 -6.32746 1.14330 1.41818 1.43511 1.55399 1.67861 2.40830 3.11759 3.37058 3.53034 3.64987 3.79902 4.01507 4.09061 4.10143 4.19356 4.25765 4.35615 4.36489 4.41816 4.48467 4.68705 4.74414 4.80814 4.84710 4.93384 4.97696 5.00317 5.05458 5.10582 5.14723 5.23911 5.26324 5.29843 5.34763 5.38014 5.47710 5.59245 5.66012 6.05525 6.49044 6.73744 6.76379 6.92802 7.38466 8.90065 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034601 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.020414 B = 8224.841431 C = 8744.614583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.471 3.529 5 O -0.528 6.528 6 C -0.069 4.069 7 H 0.131 0.869 8 C -0.099 4.099 9 C -0.097 4.097 10 C 0.080 3.920 11 H 0.012 0.988 12 N -0.682 5.682 13 C 0.211 3.789 14 C -0.535 4.535 15 H 0.066 0.934 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.100 4.100 23 C -0.067 4.067 24 H 0.059 0.941 25 C -0.153 4.153 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.335 0.665 36 H -0.046 1.046 37 H 0.001 0.999 38 H 0.265 0.735 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 -15.784 12.777 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.316 3.684 5 O -0.417 6.417 6 C -0.088 4.088 7 H 0.148 0.852 8 C -0.137 4.137 9 C -0.135 4.135 10 C -0.030 4.030 11 H 0.030 0.970 12 N -0.312 5.312 13 C 0.083 3.917 14 C -0.573 4.573 15 H 0.084 0.916 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.138 4.138 23 C -0.086 4.086 24 H 0.078 0.922 25 C -0.210 4.210 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.153 0.847 36 H -0.029 1.029 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.426 -15.762 12.721 22.781 hybrid contribution 1.248 0.086 -1.114 1.675 sum -9.178 -15.676 11.606 21.557 Atomic orbital electron populations 1.21823 0.90574 1.04302 1.03695 1.23279 0.97027 0.79364 1.02484 1.86529 1.24060 1.33598 1.83511 1.23973 0.80577 0.92749 0.71121 1.90589 1.60663 1.44077 1.46413 1.21208 0.95916 0.88964 1.02707 0.85177 1.21448 1.01825 0.94876 0.95588 1.21417 0.94050 0.95755 1.02316 1.21622 0.95904 0.88667 0.96829 0.96984 1.60582 1.30378 1.20905 1.19378 1.19200 0.93943 0.93528 0.84998 1.21579 1.41457 1.00875 0.93375 0.91594 1.25977 0.95983 1.03032 0.94873 1.70103 1.49300 1.39707 0.98480 0.85323 0.78451 0.78446 0.78016 1.19758 1.20792 1.18710 1.21678 1.00417 0.94042 0.97630 1.20904 0.91822 0.95877 0.99981 0.92222 1.22004 1.01689 1.00955 0.96338 0.88242 0.91112 0.91553 0.91690 0.91044 0.92703 0.88973 0.93862 0.90204 0.84743 1.02852 0.98080 0.92675 0.89582 0.91412 0.91598 0.91554 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.86 6.19 71.98 0.45 1.31 16 3 O -0.36 -7.70 10.12 -51.35 -0.52 -8.22 16 4 C 0.47 11.31 6.96 71.23 0.50 11.80 16 5 O -0.53 -14.90 13.41 21.95 0.29 -14.61 16 6 C -0.07 -1.55 2.16 -11.54 -0.02 -1.57 16 7 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 8 C -0.10 -2.47 5.14 30.60 0.16 -2.31 16 9 C -0.10 -3.03 5.43 30.60 0.17 -2.87 16 10 C 0.08 2.78 2.49 44.92 0.11 2.89 16 11 H 0.01 0.48 7.80 -2.39 -0.02 0.46 16 12 N -0.68 -29.09 6.30 -495.59 -3.12 -32.22 16 13 C 0.21 11.46 5.24 85.56 0.45 11.91 16 14 C -0.53 -30.73 9.32 25.60 0.24 -30.49 16 15 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 18 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 C -0.10 -2.64 4.48 30.61 0.14 -2.51 16 23 C -0.07 -1.62 1.89 -10.78 -0.02 -1.64 16 24 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 25 C -0.15 -3.28 8.87 71.98 0.64 -2.64 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 30 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 2.00 8.11 -2.38 -0.02 1.98 16 33 H 0.04 1.58 7.45 -2.39 -0.02 1.56 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.34 13.51 8.34 -89.69 -0.75 12.76 16 36 H -0.05 -2.73 8.05 -2.39 -0.02 -2.75 16 37 H 0.00 0.07 7.43 -2.38 -0.02 0.05 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 41 H 0.07 1.58 5.52 -2.39 -0.01 1.57 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -67.25 342.49 3.18 -64.07 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.22 Total: 17.95 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.00 Total: -16.55 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.84 Total: -89.17 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.23 Total: -22.83 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.25 3.18 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.136 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds