Wall clock time and date at job start Mon Mar 30 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47021 * 2 1 4 4 C 1.34230 * 117.00012 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00299 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46613 * 59.99655 * 6 4 3 8 8 C 1.52996 * 109.47240 * 300.00052 * 6 4 3 9 9 C 1.53002 * 109.46972 * 299.99961 * 8 6 4 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 6 11 11 H 1.09001 * 109.47502 * 300.00518 * 10 9 8 12 12 N 1.46902 * 109.47094 * 179.97438 * 10 9 8 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 10 9 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00050 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99518 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99763 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47521 * 89.99754 * 18 16 14 20 20 H 1.48501 * 109.46844 * 209.99873 * 18 16 14 21 21 H 1.48506 * 109.47040 * 329.99482 * 18 16 14 22 22 C 1.53006 * 109.47127 * 60.00361 * 10 9 8 23 23 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 24 24 H 1.08993 * 109.47194 * 180.02562 * 23 6 4 25 25 C 1.53006 * 109.46943 * 300.00011 * 23 6 4 26 26 H 1.08992 * 109.47254 * 300.00741 * 1 2 3 27 27 H 1.09008 * 109.46562 * 60.00730 * 1 2 3 28 28 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47722 * 239.99513 * 2 1 3 30 30 H 1.08998 * 109.46582 * 119.99267 * 2 1 3 31 31 H 1.08996 * 109.47452 * 179.97438 * 8 6 4 32 32 H 1.09000 * 109.47054 * 59.99661 * 8 6 4 33 33 H 1.09002 * 109.47070 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47407 * 59.99513 * 9 8 6 35 35 H 1.00897 * 111.00496 * 208.95166 * 12 10 9 36 36 H 1.09000 * 109.46786 * 299.99838 * 13 12 10 37 37 H 1.09000 * 109.46923 * 59.99884 * 13 12 10 38 38 H 0.97005 * 120.00228 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.46955 * 60.00011 * 22 10 9 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 10 9 41 41 H 1.09000 * 109.46866 * 179.97438 * 25 23 6 42 42 H 1.09001 * 109.47372 * 300.00248 * 25 23 6 43 43 H 1.09004 * 109.47107 * 59.99949 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5843 3.4701 0.8895 8 6 3.4499 3.6837 -1.2499 9 6 3.9220 2.9360 -2.4985 10 6 5.4499 2.8559 -2.4976 11 1 5.8665 3.8632 -2.4979 12 7 5.9032 2.1375 -3.6961 13 6 6.0144 3.0470 -4.8444 14 6 6.4815 2.2762 -6.0522 15 1 6.6758 1.2166 -5.9747 16 6 6.6596 2.9235 -7.2565 17 7 6.4215 4.2134 -7.3513 18 14 7.2378 1.9679 -8.7539 19 1 6.0605 1.4450 -9.4925 20 1 8.0206 2.8650 -9.6415 21 1 8.0923 0.8342 -8.3180 22 6 5.9208 2.1096 -1.2477 23 6 5.4486 2.8574 0.0014 24 1 5.8652 3.8646 0.0015 25 6 5.9191 2.1114 1.2517 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 3.8661 4.6910 -1.2501 32 1 2.3613 3.7407 -1.2504 33 1 3.5861 3.4674 -3.3889 34 1 3.5055 1.9287 -2.4981 35 1 6.7772 1.6633 -3.5245 36 1 5.0411 3.4920 -5.0510 37 1 6.7329 3.8343 -4.6161 38 1 6.5472 4.6688 -8.1985 39 1 5.5042 1.1025 -1.2474 40 1 7.0093 2.0522 -1.2473 41 1 7.0076 2.0540 1.2525 42 1 5.5823 2.6441 2.1410 43 1 5.5024 1.1041 1.2521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425981776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:31 Heat of formation + Delta-G solvation = -110.214676 kcal Electronic energy + Delta-G solvation = -21665.116513 eV Core-core repulsion = 18516.322088 eV Total energy + Delta-G solvation = -3148.794425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04171 -38.41566 -36.43129 -34.68369 -32.52222 -32.29812 -31.51517 -29.38993 -26.69452 -25.80693 -23.94322 -22.60385 -21.93570 -21.34758 -20.02346 -19.57901 -17.35621 -16.67346 -16.43804 -15.77474 -15.13791 -14.68567 -14.54172 -14.52274 -13.87238 -13.63722 -13.55491 -12.98738 -12.68411 -12.55448 -12.44356 -12.25753 -11.96172 -11.84143 -11.67348 -11.53177 -11.33114 -11.14733 -10.89035 -10.80475 -10.75629 -10.55066 -10.40016 -10.19373 -9.91488 -9.65162 -9.56372 -9.08633 -8.44289 -7.21079 -5.99921 -4.01345 2.29803 2.68674 3.34385 3.39839 3.44174 4.45434 4.50388 4.68993 4.76085 4.81213 4.85615 5.05778 5.13970 5.22007 5.29299 5.35998 5.51317 5.53511 5.56859 5.62850 5.63712 5.71149 5.79757 5.83717 5.88378 5.97457 6.07759 6.15659 6.29909 6.31800 6.45988 6.52393 6.59836 6.74519 6.91782 7.33722 7.48097 7.84136 7.87386 8.18909 8.48765 8.69324 9.08649 9.63493 11.11217 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.004298 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.358145 B = 6512.977999 C = 7066.955480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.471 3.529 5 O -0.496 6.496 6 C -0.073 4.073 7 H 0.102 0.898 8 C -0.111 4.111 9 C -0.109 4.109 10 C 0.087 3.913 11 H 0.033 0.967 12 N -0.687 5.687 13 C 0.195 3.805 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.129 4.129 23 C -0.071 4.071 24 H 0.080 0.920 25 C -0.161 4.161 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.329 0.671 36 H 0.027 0.973 37 H -0.015 1.015 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 -3.112 18.578 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.383 6.383 6 C -0.092 4.092 7 H 0.120 0.880 8 C -0.149 4.149 9 C -0.147 4.147 10 C -0.024 4.024 11 H 0.051 0.949 12 N -0.317 5.317 13 C 0.068 3.932 14 C -0.552 4.552 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.166 4.166 23 C -0.090 4.090 24 H 0.098 0.902 25 C -0.218 4.218 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.045 0.955 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.262 -3.499 18.258 20.770 hybrid contribution 1.117 0.010 -0.714 1.326 sum -8.145 -3.489 17.545 19.655 Atomic orbital electron populations 1.21797 0.92836 1.02817 1.03451 1.22986 0.95221 0.80557 1.02558 1.86505 1.24983 1.32087 1.84122 1.23716 0.80225 0.92810 0.71799 1.90550 1.59640 1.43359 1.44737 1.21203 0.96594 0.89914 1.01533 0.87976 1.21597 1.01239 0.99318 0.92783 1.21557 0.96272 1.00179 0.96674 1.21445 0.94702 0.95719 0.90496 0.94897 1.60643 1.35472 1.31754 1.03861 1.19583 0.96063 0.90475 0.87063 1.21221 1.44252 0.95556 0.94123 0.92028 1.24982 0.95716 0.94896 0.98971 1.69963 1.49595 1.08520 1.25775 0.86499 0.78723 0.79669 0.82512 1.20647 1.21325 1.19861 1.22050 1.00428 1.01605 0.92527 1.21000 0.91429 1.00303 0.96312 0.90151 1.22094 1.01438 1.02254 0.95973 0.91700 0.91337 0.90412 0.91042 0.91539 0.90463 0.90788 0.91130 0.92191 0.85390 0.95457 0.99749 0.92981 0.88848 0.92347 0.92628 0.93515 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.52 10.12 -39.26 -0.40 -4.92 16 4 C 0.47 6.41 5.45 36.00 0.20 6.61 16 5 O -0.50 -7.75 11.10 -18.75 -0.21 -7.96 16 6 C -0.07 -0.88 2.65 -91.78 -0.24 -1.12 16 7 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.11 -1.42 5.39 -26.73 -0.14 -1.56 16 9 C -0.11 -1.84 5.20 -26.73 -0.14 -1.98 16 10 C 0.09 1.59 2.49 -67.71 -0.17 1.43 16 11 H 0.03 0.63 7.80 -51.93 -0.41 0.23 16 12 N -0.69 -15.37 6.30 -107.98 -0.68 -16.05 16 13 C 0.19 5.23 5.24 -4.97 -0.03 5.21 16 14 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 16 15 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.13 -2.02 4.20 -26.70 -0.11 -2.13 16 23 C -0.07 -0.90 2.47 -90.59 -0.22 -1.13 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 C -0.16 -1.86 8.90 37.16 0.33 -1.53 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.07 1.32 7.46 -51.93 -0.39 0.93 16 34 H 0.06 1.08 7.22 -51.93 -0.37 0.71 16 35 H 0.33 7.15 8.34 -39.29 -0.33 6.83 16 36 H 0.03 0.78 7.44 -51.93 -0.39 0.40 16 37 H -0.02 -0.43 8.06 -51.93 -0.42 -0.85 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 1.63 5.52 -51.93 -0.29 1.35 16 40 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.04 5.52 -51.93 -0.29 0.75 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -31.66 336.01 -8.33 -39.99 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.49 Total: 3.14 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.34 Total: -9.83 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.06 Total: -42.55 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.61 Total: -12.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.66 -8.33 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.227 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds