Wall clock time and date at job start Mon Mar 30 2020 01:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47021 * 2 1 4 4 C 1.34230 * 117.00012 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00299 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46613 * 59.99655 * 6 4 3 8 8 C 1.52996 * 109.47240 * 300.00052 * 6 4 3 9 9 C 1.53002 * 109.46972 * 299.99961 * 8 6 4 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 6 11 11 H 1.09001 * 109.47502 * 300.00518 * 10 9 8 12 12 N 1.46902 * 109.47094 * 179.97438 * 10 9 8 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 10 9 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00050 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99518 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99763 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47521 * 89.99754 * 18 16 14 20 20 H 1.48501 * 109.46844 * 209.99873 * 18 16 14 21 21 H 1.48506 * 109.47040 * 329.99482 * 18 16 14 22 22 C 1.53006 * 109.47127 * 60.00361 * 10 9 8 23 23 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 24 24 H 1.08993 * 109.47194 * 180.02562 * 23 6 4 25 25 C 1.53006 * 109.46943 * 300.00011 * 23 6 4 26 26 H 1.08992 * 109.47254 * 300.00741 * 1 2 3 27 27 H 1.09008 * 109.46562 * 60.00730 * 1 2 3 28 28 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47722 * 239.99513 * 2 1 3 30 30 H 1.08998 * 109.46582 * 119.99267 * 2 1 3 31 31 H 1.08996 * 109.47452 * 179.97438 * 8 6 4 32 32 H 1.09000 * 109.47054 * 59.99661 * 8 6 4 33 33 H 1.09002 * 109.47070 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47407 * 59.99513 * 9 8 6 35 35 H 1.00897 * 111.00496 * 208.95166 * 12 10 9 36 36 H 1.09000 * 109.46786 * 299.99838 * 13 12 10 37 37 H 1.09000 * 109.46923 * 59.99884 * 13 12 10 38 38 H 0.97005 * 120.00228 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.46955 * 60.00011 * 22 10 9 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 10 9 41 41 H 1.09000 * 109.46866 * 179.97438 * 25 23 6 42 42 H 1.09001 * 109.47372 * 300.00248 * 25 23 6 43 43 H 1.09004 * 109.47107 * 59.99949 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5843 3.4701 0.8895 8 6 3.4499 3.6837 -1.2499 9 6 3.9220 2.9360 -2.4985 10 6 5.4499 2.8559 -2.4976 11 1 5.8665 3.8632 -2.4979 12 7 5.9032 2.1375 -3.6961 13 6 6.0144 3.0470 -4.8444 14 6 6.4815 2.2762 -6.0522 15 1 6.6758 1.2166 -5.9747 16 6 6.6596 2.9235 -7.2565 17 7 6.4215 4.2134 -7.3513 18 14 7.2378 1.9679 -8.7539 19 1 6.0605 1.4450 -9.4925 20 1 8.0206 2.8650 -9.6415 21 1 8.0923 0.8342 -8.3180 22 6 5.9208 2.1096 -1.2477 23 6 5.4486 2.8574 0.0014 24 1 5.8652 3.8646 0.0015 25 6 5.9191 2.1114 1.2517 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 3.8661 4.6910 -1.2501 32 1 2.3613 3.7407 -1.2504 33 1 3.5861 3.4674 -3.3889 34 1 3.5055 1.9287 -2.4981 35 1 6.7772 1.6633 -3.5245 36 1 5.0411 3.4920 -5.0510 37 1 6.7329 3.8343 -4.6161 38 1 6.5472 4.6688 -8.1985 39 1 5.5042 1.1025 -1.2474 40 1 7.0093 2.0522 -1.2473 41 1 7.0076 2.0540 1.2525 42 1 5.5823 2.6441 2.1410 43 1 5.5024 1.1041 1.2521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425981776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:30 Heat of formation + Delta-G solvation = -129.892747 kcal Electronic energy + Delta-G solvation = -21665.969818 eV Core-core repulsion = 18516.322088 eV Total energy + Delta-G solvation = -3149.647730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10610 -39.59056 -37.60634 -36.32373 -34.53126 -33.32124 -32.46906 -30.99553 -28.06292 -27.51119 -24.96829 -23.88936 -23.58874 -22.47155 -21.48302 -20.67865 -18.60598 -18.38239 -17.66339 -16.94658 -16.63236 -16.35617 -16.12699 -15.58468 -15.25460 -14.86001 -14.70779 -14.34460 -14.00361 -13.75512 -13.72318 -13.43926 -13.38426 -13.02706 -12.91684 -12.73204 -12.71011 -12.47102 -12.45426 -12.29822 -12.11185 -11.96920 -11.82250 -11.48370 -11.39312 -11.06186 -11.00506 -10.75690 -10.65797 -9.11080 -8.24064 -6.35343 1.26672 1.39089 1.41147 1.52492 1.77353 2.38582 3.08787 3.41652 3.51998 3.67536 3.89002 4.02796 4.10150 4.12704 4.17550 4.22552 4.36999 4.38774 4.45191 4.53864 4.69355 4.74806 4.83231 4.88679 4.94561 4.98751 5.02986 5.07723 5.13141 5.16366 5.20084 5.25909 5.27449 5.34772 5.39747 5.43308 5.61992 5.77716 6.03417 6.47828 6.73271 6.85544 6.88145 7.35673 8.87517 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.004298 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.358145 B = 6512.977999 C = 7066.955480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.466 3.534 5 O -0.521 6.521 6 C -0.070 4.070 7 H 0.142 0.858 8 C -0.103 4.103 9 C -0.104 4.104 10 C 0.084 3.916 11 H 0.027 0.973 12 N -0.691 5.691 13 C 0.213 3.787 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.973 3.027 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.119 4.119 23 C -0.069 4.069 24 H 0.098 0.902 25 C -0.155 4.155 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.331 0.669 36 H 0.001 0.999 37 H -0.041 1.041 38 H 0.266 0.734 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 -3.134 19.784 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.311 3.689 5 O -0.411 6.411 6 C -0.089 4.089 7 H 0.160 0.840 8 C -0.140 4.140 9 C -0.143 4.143 10 C -0.026 4.026 11 H 0.045 0.955 12 N -0.321 5.321 13 C 0.085 3.915 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.157 4.157 23 C -0.088 4.088 24 H 0.116 0.884 25 C -0.212 4.212 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.149 0.851 36 H 0.019 0.981 37 H -0.023 1.023 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.707 -3.526 19.489 22.056 hybrid contribution 1.218 -0.003 -1.073 1.624 sum -8.489 -3.528 18.415 20.582 Atomic orbital electron populations 1.21807 0.90529 1.04206 1.03676 1.23204 0.97047 0.79689 1.02087 1.86503 1.24469 1.33192 1.83772 1.24115 0.80421 0.93258 0.71097 1.90550 1.60229 1.44338 1.45950 1.21291 0.95915 0.89168 1.02496 0.84024 1.21546 1.02284 0.99430 0.90771 1.21491 0.95049 0.99577 0.98155 1.21597 0.95656 0.95269 0.90039 0.95533 1.60575 1.35517 1.31378 1.04618 1.19197 0.93580 0.90193 0.88496 1.21559 1.45050 0.95734 0.95391 0.92161 1.25936 0.95404 0.95905 1.02267 1.70084 1.50070 1.10187 1.26911 0.85338 0.78463 0.78353 0.78165 1.19843 1.20366 1.18921 1.21943 1.00248 1.00710 0.92812 1.21021 0.92110 1.00742 0.94900 0.88418 1.22021 1.01524 1.01367 0.96266 0.90666 0.91832 0.88473 0.92663 0.90938 0.88791 0.89189 0.93774 0.93849 0.85139 0.98119 1.02304 0.92544 0.90637 0.92423 0.92404 0.90959 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.29 71.98 0.74 -1.28 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.67 10.12 -51.41 -0.52 -9.19 16 4 C 0.47 12.15 5.45 71.23 0.39 12.54 16 5 O -0.52 -16.21 11.10 21.97 0.24 -15.96 16 6 C -0.07 -1.49 2.65 -11.54 -0.03 -1.52 16 7 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.10 -2.43 5.39 30.59 0.16 -2.27 16 9 C -0.10 -3.60 5.20 30.59 0.16 -3.44 16 10 C 0.08 3.16 2.49 44.92 0.11 3.27 16 11 H 0.03 1.04 7.80 -2.39 -0.02 1.02 16 12 N -0.69 -32.11 6.30 -495.54 -3.12 -35.23 16 13 C 0.21 11.95 5.24 85.56 0.45 12.40 16 14 C -0.54 -32.07 9.32 25.60 0.24 -31.83 16 15 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 18 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.12 -3.73 4.20 30.61 0.13 -3.61 16 23 C -0.07 -1.59 2.47 -10.78 -0.03 -1.62 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 C -0.15 -3.22 8.90 71.98 0.64 -2.58 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 1.89 8.11 -2.39 -0.02 1.87 16 33 H 0.04 1.72 7.46 -2.39 -0.02 1.70 16 34 H 0.04 1.61 7.22 -2.39 -0.02 1.60 16 35 H 0.33 14.92 8.34 -89.70 -0.75 14.17 16 36 H 0.00 0.04 7.44 -2.39 -0.02 0.03 16 37 H -0.04 -2.43 8.06 -2.39 -0.02 -2.45 16 38 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.08 2.68 5.52 -2.39 -0.01 2.67 16 40 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.52 5.52 -2.38 -0.01 1.51 16 Total: -1.00 -70.09 336.01 3.02 -67.08 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.23 Total: 20.73 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 3.87 Total: -17.76 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -2.84 Total: -92.35 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.28 Total: -25.15 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.09 3.02 -67.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425981776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.817 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds